mRNA_H-elongata_contig48791.12047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48791.12047.1
Unique NamemRNA_H-elongata_contig48791.12047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 1.830e-157
Identity = 222/250 (88.80%), Postives = 236/250 (94.40%), Query Frame = 1
Query:   13 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDKPKV 762
            QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPM +  AEDLVFAGDNFIRYTGDVRE ARTSVFAWEAADRGQ+VHPVADPSQAEMLRKKFD+KKTTLKEEQKQRILDKYGG+EHL+VPD+RLL GQTE+YVEYDRTGR+VKGAPKAVAKSKYEE+VFP NH SVWGSYFDKRSMRWGF CCHSL  +SYCTGE GK+ANDEANSVLNVD AG+RKMLEGR+EG+  KV
Sbjct:  299 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYTGDVREQARTSVFAWEAADRGQEVHPVADPSQAEMLRKKFDDKKTTLKEEQKQRILDKYGGSEHLDVPDARLLVGQTESYVEYDRTGRVVKGAPKAVAKSKYEENVFPSNHTSVWGSYFDKRSMRWGFSCCHSLTFKSYCTGEEGKVANDEANSVLNVDLAGERKMLEGRKEGEASKV 548          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.770e-105
Identity = 156/232 (67.24%), Postives = 187/232 (80.60%), Query Frame = 1
Query:   13 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVP----DSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVL 696
            QGRVARQGGLGGAQM TTVRNLRIREDRAKYLYNLDP+SAYYDPKTRAMR+NP   AN E+L +AGDNF+RY G V++ ART V+AWEAA RGQ++HPVADPSQAE+L ++F+ +K  LK +Q+ RIL+KYGG           D RL  GQ+E YVEYDR GR++KGA +AVA+SKYEEDV PGNH SVWGSY+++R+ RWGF CCH+L   +YCTG AG+ ANDEAN  +
Sbjct:  262 QGRVARQGGLGGAQMATTVRNLRIREDRAKYLYNLDPDSAYYDPKTRAMRENPNPSANPEELAYAGDNFMRYGGGVKDFARTQVYAWEAAARGQELHPVADPSQAELLHRQFEARKDALKGDQRTRILEKYGGXXXXAAGEGGIDPRLALGQSEAYVEYDRAGRVIKGAAQAVARSKYEEDVVPGNHASVWGSYYERRAGRWGFACCHALSRAAYCTGAAGRAANDEANDAV 493          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A8K1CDK9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDK9_PYTOL)

HSP 1 Score: 303 bits (776), Expect = 1.080e-96
Identity = 147/245 (60.00%), Postives = 181/245 (73.88%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDK 753
            R+ARQGG+GGAQM TTVRNLRIRED AKYL NL+P SAYYDPKTR+MRDNP  + N ED  F GDN +R+TGD ++ A T +FAWEA  +G D+HP A PSQAE LRK+F+E+K  L+ E+ ++ILDKYGG EHL+ P   LL  QTENYVEY R GR+VKG  +A A+SKY EDV+  NH +VWGS+FD+R M WG+ CCHS +  SYCTGE GK A  EA  ++N     +R ML+  +  DK
Sbjct:  239 RIARQGGVGGAQMMTTVRNLRIREDTAKYLRNLNPESAYYDPKTRSMRDNPNPEMNPEDTTFIGDNVVRHTGDAQKLATTQLFAWEAYAKGADIHPQATPSQAEFLRKQFEERKAALEREKSKKILDKYGGQEHLQAPPKELLLAQTENYVEYSRDGRVVKGQERAKARSKYVEDVYENNHTAVWGSWFDRREMAWGYGCCHSKVRNSYCTGEEGKQAL-EAAKIVNT----ERPMLQAVERTDK 478          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: K3X5L6_GLOUD (Pre-mRNA-splicing factor SLU7 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5L6_GLOUD)

HSP 1 Score: 303 bits (777), Expect = 1.590e-96
Identity = 145/237 (61.18%), Postives = 182/237 (76.79%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKML 729
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  + GDN +R+TGD ++ A   +FAWEA  +G D+HP+A+PSQAE L+K+F+EKK  L++E+ ++ILDKYGG +HLE P   LL  QTE+YVEY R GR+VKG  +A  KSKY EDVF  NH ++WGS+FD+  M WG+ CCHS + +SYCTGE GK A + +   +NV A  QR+ML
Sbjct:  267 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYLGDNVVRFTGDAQKLASAQLFAWEAYAKGTDIHPLANPSQAEFLKKQFEEKKAALEKEKSRKILDKYGGQQHLEAPPKELLLAQTEHYVEYSRDGRVVKGLERAPIKSKYVEDVFENNHTAIWGSWFDRSEMAWGYSCCHSKVRKSYCTGEDGKKAIEAS---MNVSA--QRQML 498          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: H3G9I3_PHYRM (Pre-mRNA-splicing factor SLU7 n=6 Tax=Phytophthora TaxID=4783 RepID=H3G9I3_PHYRM)

HSP 1 Score: 298 bits (764), Expect = 1.060e-94
Identity = 142/237 (59.92%), Postives = 178/237 (75.11%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKML 729
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  F GDN  R+TGD ++ A   +FAWEA  +G D+HP+A+PSQAE L+K+++E+K  L++E+ ++ILDKYGG EHLE P   LL  Q+E+YVEY R GR+VKG  +A  +SKY ED F  NH S+WGS+FD+  M WG+ CCHS + +SYCTG+ GK A +EA S     A  +R ML
Sbjct:  246 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNTARFTGDAQKLASAQLFAWEAYSKGTDIHPLANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEHLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYVEDSFENNHTSIWGSWFDRSEMAWGYGCCHSKVRKSYCTGDDGKKALEEAKS-----ANAERPML 477          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: W2PIB2_PHYPN (Pre-mRNA-splicing factor SLU7 n=12 Tax=Phytophthora TaxID=4783 RepID=W2PIB2_PHYPN)

HSP 1 Score: 297 bits (761), Expect = 3.380e-94
Identity = 136/225 (60.44%), Postives = 173/225 (76.89%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSV 693
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  F GDN  R+TGD ++ A   +FAWEA  +G D+HP+A+PSQAE L+K+++E+K  L++E+ ++ILDKYGG E+LE P   LL  Q+E+YVEY R GR+VKG  +A  +SKY ED F  NH S+WGS+FD+  M WG+ CCHS + +SYCTGE GK A +E+ + 
Sbjct:  251 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNMTRFTGDAQKLASAQLFAWEAYSKGTDIHPIANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEYLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYVEDAFENNHTSIWGSWFDRTEMAWGYACCHSKVRKSYCTGEDGKKAIEESKTT 475          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A484DY55_BRELC (Pre-mRNA-splicing factor SLU7 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY55_BRELC)

HSP 1 Score: 297 bits (760), Expect = 4.650e-94
Identity = 143/234 (61.11%), Postives = 177/234 (75.64%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDE---ANS---VLNV 702
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  F GDN  R+TGD ++ A   +FAWEA  +G D+HP+A+PSQAE L+K+++E+K  L++E+  +IL+KYGG EHLE P   LL  QTE+YVEY R G +VKG  +A A+SKY ED F  NH  +WGS+FD+ +M WG+ CCHS + +SYCTGEAG  A DE   ANS   +LNV
Sbjct:  251 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNMTRFTGDAQKLASAQLFAWEAYSKGTDIHPLANPSQAEFLKKQYEERKALLEKEKSSKILEKYGGQEHLEAPPKELLLAQTEHYVEYSRDGHVVKGRERASARSKYVEDSFENNHTQIWGSWFDRTAMLWGYACCHSKVRKSYCTGEAGIQAADESYIANSERPMLNV 484          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A3M6VBJ9_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VBJ9_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.780e-92
Identity = 136/227 (59.91%), Postives = 171/227 (75.33%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLN 699
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSA+YDPKTR+MRDNP  + N ED  F GDN  RYTGD ++ A   +FAWEA  +G D+H +A+PSQAE L+K+++E+K  L++E+ ++ILDKYGG EHLE P   LL  Q+E+YVEY R GR+VKG  +A  +SKY EDVF  NH S+WGS+FD+  M WG+ CCHS   +SYCTG+ GK A  +  S  +
Sbjct:  256 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAFYDPKTRSMRDNPNPELNPEDTTFIGDNMARYTGDAQKLASAQLFAWEAYSKGTDIHSLANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEHLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYIEDVFENNHTSIWGSWFDRSEMAWGYACCHSKARKSYCTGDDGKKALHDLQSTYS 482          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A2D4C2G9_PYTIN (Pre-mRNA-splicing factor SLU7 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2G9_PYTIN)

HSP 1 Score: 293 bits (749), Expect = 2.210e-92
Identity = 138/231 (59.74%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAA 711
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  F GDN +R++GD    A T +FAWEA  +G ++HP A PSQAE LRK+F+E+K  L++E+ + ILDKYGG EHL+ P   LL  Q+E+YVEY R GR+ +G  +A  +SKY EDV   NH SVWGS+FD+  M WG+ CCHS + +SYCTGE GK A + A    N + A
Sbjct:  246 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNIVRHSGDAARLAATQLFAWEAYAKGAEIHPQATPSQAEFLRKQFEERKAALEKEKARSILDKYGGQEHLQAPPRELLLAQSEHYVEYTRDGRVARGQERAKVRSKYVEDVLEQNHTSVWGSWFDRNDMAWGYACCHSKVRKSYCTGEEGKQAIEAARHAQNTERA 476          
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A0P1B6R9_PLAHL (Pre-mRNA-splicing factor SLU7 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6R9_PLAHL)

HSP 1 Score: 289 bits (740), Expect = 3.090e-92
Identity = 137/247 (55.47%), Postives = 178/247 (72.06%), Query Frame = 1
Query:   19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDKPK 759
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP  + N ED  + GDN  R+TGD ++ A   +FAWEA  +G D+HP+A+PSQAE L+K+++++K  L++E+  +IL KYGG +HLE P   LL  Q+E+YVEY   GR++KG  +A+ +SKY ED F  NH  +WGS+FD+  M WG+ CCHS +  SYCTGE G  A  EA SV       +R ML+  ++ D+ K
Sbjct:  148 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNMTRFTGDAQKLASAQLFAWEAYAKGTDIHPIANPSQAEFLKKQYEKRKAALEKEKSSKILAKYGGQQHLEAPPKELLLAQSEHYVEYSSDGRVIKGRERALVRSKYIEDAFENNHTKIWGSWFDRSDMMWGYACCHSKVRNSYCTGEDGIKALKEAKSVNT-----ERPMLKVLEKSDREK 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU41_ECTSI1.830e-15788.80Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus T... [more]
A0A836CLD5_9STRA1.770e-10567.24Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema mi... [more]
A0A8K1CDK9_PYTOL1.080e-9660.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X5L6_GLOUD1.590e-9661.18Pre-mRNA-splicing factor SLU7 n=1 Tax=Globisporang... [more]
H3G9I3_PHYRM1.060e-9459.92Pre-mRNA-splicing factor SLU7 n=6 Tax=Phytophthora... [more]
W2PIB2_PHYPN3.380e-9460.44Pre-mRNA-splicing factor SLU7 n=12 Tax=Phytophthor... [more]
A0A484DY55_BRELC4.650e-9461.11Pre-mRNA-splicing factor SLU7 n=1 Tax=Bremia lactu... [more]
A0A3M6VBJ9_9STRA1.780e-9259.91Pre-mRNA-splicing factor SLU7 n=1 Tax=Peronospora ... [more]
A0A2D4C2G9_PYTIN2.210e-9259.74Pre-mRNA-splicing factor SLU7 n=1 Tax=Pythium insi... [more]
A0A0P1B6R9_PLAHL3.090e-9255.47Pre-mRNA-splicing factor SLU7 n=1 Tax=Plasmopara h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48791contigH-elongata_contig48791:148..3769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.7
Seed ortholog evalue4.5e-127
Seed eggNOG ortholog2880.D7FU41
Preferred nameSLU7
KEGG koko:K12819,ko:K17081,ko:K20040
KEGG Pathwayko03040,map03040
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2560@1,KOG2560@2759
Ec32 ortholog descriptionPre-mRNA splicing Prp18-interacting factor
Ec32 orthologEc-25_000730.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03041,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size771
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48791.12047.1prot_H-elongata_contig48791.12047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48791 148..3769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930803.405312-CDS-H-elongata_contig48791:147..3711622930803.405312-CDS-H-elongata_contig48791:147..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 148..371 +
1691679577.0204368-CDS-H-elongata_contig48791:147..3711691679577.0204368-CDS-H-elongata_contig48791:147..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 148..371 +
1622930803.422227-CDS-H-elongata_contig48791:882..11711622930803.422227-CDS-H-elongata_contig48791:882..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 883..1171 +
1691679577.0333645-CDS-H-elongata_contig48791:882..11711691679577.0333645-CDS-H-elongata_contig48791:882..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 883..1171 +
1622930803.4383497-CDS-H-elongata_contig48791:2579..27321622930803.4383497-CDS-H-elongata_contig48791:2579..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 2580..2732 +
1691679577.043348-CDS-H-elongata_contig48791:2579..27321691679577.043348-CDS-H-elongata_contig48791:2579..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 2580..2732 +
1622930803.4605381-CDS-H-elongata_contig48791:3664..37691622930803.4605381-CDS-H-elongata_contig48791:3664..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 3665..3769 +
1691679577.0548904-CDS-H-elongata_contig48791:3664..37691691679577.0548904-CDS-H-elongata_contig48791:3664..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48791 3665..3769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48791.12047.1

>prot_H-elongata_contig48791.12047.1 ID=prot_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
NVHHQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKT
RAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDV
HPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLA
GQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSM
RWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGD
KPKVSG*
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mRNA from alignment at H-elongata_contig48791:148..3769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48791.12047.1 ID=mRNA_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3622bp|location=Sequence derived from alignment at H-elongata_contig48791:148..3769+ (Himanthalia elongata Himel1 dioecious)
AACGTGCATCACCAGGGTCGCGTAGCGCGTCAGGGAGGTCTCGGCGGTGC CCAGATGAAAACCACGGTCCGAAACTTGCGAATCAGAGAGGACAGAGCGA AGTACCTTTACAACCTGGACCCGAACTCTGCCTACTACGACCCGAAGACG CGCGCCATGCGCGATAACCCCATGGCCGACGCTAACGCGGAAGACTTGGT CTTCGCCGGAGACAACTTCATCCGGTGAGGCAGGGTCTCTCACCAGCCCA GTGCCAACTGATAATGCTCGCGCTCGTGTGGTGGAACTCCTTTTGGGATG GATACGCAAGGGTGGCATGCGTACAGTCGTGTTGGCTGGAGCTTTTGCCC GCGTGGCCTTGACGGGAGACCGGCGCCCTCTGATATAATGATAGTTGGTG TGGGTTTTCCAGAGAGTTAGGGATGGGGAGATGAAGCCGGGGACGCGTGA CGTGGAGTTTCTTAGCCGTGATATACCAATGGCTTTTGACCATCGTCGAA CGATCCTCCGAACGACAGCGCGGTAAAATGTTTTAAGAGCCAAGGCATTC AAAACTTGAGCACGCCCCCCTTGAACGGCTGCGACTGCGCCAGGGTAAGT TCTCCTTGGCGGGACTACAAAATACATGATGATCGAAAGAGAAAAATGCG GCATAGCTCATAATGCTGTCACCGCCATCGCCGCGCCGCCTTCGTCATCG TGCGTGAATGTGTTTTGGATCTGACACCTCCGCAGGTATACGGGCGACGT CCGCGAGCACGCCCGAACCTCAGTGTTCGCGTGGGAGGCCGCCGATCGTG GCCAGGACGTGCACCCCGTGGCCGACCCCAGCCAGGCAGAGATGCTACGG AAAAAGTTCGACGAGAAAAAGACGACCCTCAAAGAGGAGCAGAAGCAACG CATCCTAGACAAGTACGGGGGCGCGGAGCACCTCGAGGTGCCGGACTCGC GGTTGCTGGCGGGACAGACGGAGAACTACGTGGAGTACGACCGGACGGGG CGAATTGTCAAGGGGGCACCCAAGGTATGGAGGCACGGAAGATACGATAG TAAGGGGGAGAGGGGGAGAGAGAGAGCTAGCTGTCTATTGGGTTTCGGTG GGCTGATGCGATGGAGTCCATCTATTGGTGGGATGTTGGCGGGGTGGTCG TGTTGTGGTAATCCGGACTCGTCGGTTTCTGTGCGTGTTACAAAGGTGTT GGGTGGCGGGGGTGTACTCAACTTTTGCATACCTTATTTTTTTTCTGATA GACCATTGATAATACCTCCTCGCGAGGGCGGGAAGCAGGGTGAGAGAGGG CTGACGCCGTAAGACATGCTCTGGACGGGCTTCCACCCGCCGCGGGAAGA CGCATTTTGCTTTGGCGCGCACAGTTTTCACCTACCTCCATCCTATTTCC AAGACAATGCCGGTGGTCACCGTAGTCATGTATGACACACACACACACAC ACACACACACACTGCTATATGTGATGACCACACACATACAGGCCTCGAGC TGGCCAGCTCTGGGTCGTAAATGTTTGCAGCAGGAGTGGGTAAAGGGTTT CCCATAATAGCGGAAGGCGTACGTTGGTTTCAGTACGTAATTTTATTTCA TACAGTTTGCGGAGGCAGGAGCTCAAAATCAGGGACATATTTTTCACTAT ACGGTGTGATACGATACGATACGTCTCGGGTATTCAATACATTATATATT GCCTGTGACAACTTAGCAGCCAGTACCTATCCGCACAGAGATATCACTAT ACGGTGCGATACGATGCGATATGTCTCGGGTATTCCATACATTATATATT ATCTGTGACTACTGCTGTATCGCACATGTTCACTCTACCAATAGTGGTTG TGGGGAAAGAGAGTCGTACAAGAATTAGTCCATGGGATTTTACCTGAATA GGCTGCACCCGTTTCTTAAGCTACGTTTGACTCTCGGTGGGAAACGCCAC CACCGATACGCAATTGCGTGACCTGATGAAATCGGGATTGACCCGATGTC GGTTGACGGCAGAGATGGACGCCGTCGCGGAAAACGAGAGGATCCCGGGA GTACCCACCAGATTTAGCGTGGGTTTAAGAGAATGAGCAGGCTGACGCGG GGCGGGACTGCCAAACCCGCCTCGCGATACCAAACTTTCAGGCGCGAACG GGGAGAGGGGAAAATAAAATAAAATCCCCTGTTCAGCTGACCTCAAGCAG GAGGCAACCATATCCGGTTCATCAATACTAAATACTATATACTTAATACT ACATACTTTATACTAAATACTTTAACTAAATACTATATACTAAATACTAT ATACTTAATACTACATACTTTATACTAAATACTATATACTAGATGTCATG AAAACACATAATTGAAATATGTAATATATATATATATATATGTTTATAAA TGTGCGTGTGTTTCCTTTTGGCCGACTTGCAGGCGGTAGCGAAGTCCAAG TACGAGGAGGACGTGTTCCCCGGGAATCACTTGTCGGTGTGGGGGAGCTA CTTCGATAAGCGCTCCATGAGGTGGGGGTTCGAGTGCTGCCACTCCCTCA TGCTCAGGTCCTACTGCACTGGGGAGGCGGGAAAGGTCAGTCGTGGGAGG ATGTGGATGTTTCGGTGAAGGTGTTTAGCTTGTTAGCTTGTTAGGTTGAC AACGTCCGTGCGGGATCTATTAAGTCTTTCTTAGAAAAATGTGTTTTCTT TGTTACAACGCGGATTTTGTTTGATTCTCAATGATCTCTCTACCGAAGAG AGTCTTTCTACCGACACGCACACGGCTTGTCGCGTCGGCGCTGCTTTCTT GCCTGCGCTAACTGAAAATTTAGGTTCGGTATGAGGGGGGGGTGGGGGGT GGGGAGGGGATTTTCATTTTTGGGCGTCTGTCGCGCATCCTTTTTGGCGT GTAGTTCATTAAGGATAGAGCCATGAAGGATGCTGACTATCCTGGTCAAG TTTTGTCGGTGAATAGTCACACGGAATTGGGGTGAATAGTCACACGCAAT TGGGCGGAAGCTTGAGGGGAGGGGAGGAAAGAAGGGGGACGTTGTCAAGT ATTTGCATGCATACCTTAGCTTTTAGACCGTTAGACCACGCGTCCTCGAG GGAAAGGGGAGAAGGGAAGGCTTTGTTATATGCGTTTAGGGGATGTACGT GGTCTGTCGTGTCGTCGCTAGTCCTCAGCGGGAGCATTTTTATTTTTTAT TTTTTTTATAAACTCATTCCAACGCTCCGAACATCCACACCGTCTTAGCG CCGTGAGAGGTGTAGTCCAGGGGGACCAACTATCGTCGGGTTCGAATGTG GACATTACTACCTTTAACAACAAAATAATCCCATGTAATTAATCGTGTTT CCCAGTAAAATAGTAATGACGTCATCGGGTCGACGGTATAATGTCAGGGA TGATACCATTATTATCTATCACATCAAATTGCTGCTGCTGGGAATATATC CTGGCGTTGCACACCAGGAAGGCATGTTTTGGTGCGATCTCTCTTCTGAC TCTTCCTCTCTCTCCAGATCGCGAATGACGAGGCCAACTCGGTCCTTAAC GTCGATGCCGCCGGACAAAGGAAAATGCTCGAGGGTCGGCAAGAAGGAGA CAAGCCCAAGGTATCCGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48791:148..3769+

>mRNA_H-elongata_contig48791.12047.1 ID=mRNA_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig48791:148..3769+ (Himanthalia elongata Himel1 dioecious)
AACGTGCATCACCAGGGTCGCGTAGCGCGTCAGGGAGGTCTCGGCGGTGC
CCAGATGAAAACCACGGTCCGAAACTTGCGAATCAGAGAGGACAGAGCGA
AGTACCTTTACAACCTGGACCCGAACTCTGCCTACTACGACCCGAAGACG
CGCGCCATGCGCGATAACCCCATGGCCGACGCTAACGCGGAAGACTTGGT
CTTCGCCGGAGACAACTTCATCCGAACGTGCATCACCAGGGTCGCGTAGC
GCGTCAGGGAGGTCTCGGCGGTGCCCAGATGAAAACCACGGTCCGAAACT
TGCGAATCAGAGAGGACAGAGCGAAGTACCTTTACAACCTGGACCCGAAC
TCTGCCTACTACGACCCGAAGACGCGCGCCATGCGCGATAACCCCATGGC
CGACGCTAACGCGGAAGACTTGGTCTTCGCCGGAGACAACTTCATCCGGT
ATACGGGCGACGTCCGCGAGCACGCCCGAACCTCAGTGTTCGCGTGGGAG
GCCGCCGATCGTGGCCAGGACGTGCACCCCGTGGCCGACCCCAGCCAGGC
AGAGATGCTACGGAAAAAGTTCGACGAGAAAAAGACGACCCTCAAAGAGG
AGCAGAAGCAACGCATCCTAGACAAGTACGGGGGCGCGGAGCACCTCGAG
GTGCCGGACTCGCGGTTGCTGGCGGGACAGACGGAGAACTACGTGGAGTA
CGACCGGACGGGGCGAATTGTCAAGGGGGCACCCAAGGTATACGGGCGAC
GTCCGCGAGCACGCCCGAACCTCAGTGTTCGCGTGGGAGGCCGCCGATCG
TGGCCAGGACGTGCACCCCGTGGCCGACCCCAGCCAGGCAGAGATGCTAC
GGAAAAAGTTCGACGAGAAAAAGACGACCCTCAAAGAGGAGCAGAAGCAA
CGCATCCTAGACAAGTACGGGGGCGCGGAGCACCTCGAGGTGCCGGACTC
GCGGTTGCTGGCGGGACAGACGGAGAACTACGTGGAGTACGACCGGACGG
GGCGAATTGTCAAGGGGGCACCCAAGGCGGTAGCGAAGTCCAAGTACGAG
GAGGACGTGTTCCCCGGGAATCACTTGTCGGTGTGGGGGAGCTACTTCGA
TAAGCGCTCCATGAGGTGGGGGTTCGAGTGCTGCCACTCCCTCATGCTCA
GGTCCTACTGCACTGGGGAGGCGGGAAAGGCGGTAGCGAAGTCCAAGTAC
GAGGAGGACGTGTTCCCCGGGAATCACTTGTCGGTGTGGGGGAGCTACTT
CGATAAGCGCTCCATGAGGTGGGGGTTCGAGTGCTGCCACTCCCTCATGC
TCAGGTCCTACTGCACTGGGGAGGCGGGAAAGATCGCGAATGACGAGGCC
AACTCGGTCCTTAACGTCGATGCCGCCGGACAAAGGAAAATGCTCGAGGG
TCGGCAAGAAGGAGACAAGCCCAAGGTATCCGGTTGAATCGCGAATGACG
AGGCCAACTCGGTCCTTAACGTCGATGCCGCCGGACAAAGGAAAATGCTC
GAGGGTCGGCAAGAAGGAGACAAGCCCAAGGTATCCGGTTGA
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