mRNA_H-elongata_contig48791.12047.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI) HSP 1 Score: 461 bits (1185), Expect = 1.830e-157 Identity = 222/250 (88.80%), Postives = 236/250 (94.40%), Query Frame = 1
Query: 13 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDKPKV 762
QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPM + AEDLVFAGDNFIRYTGDVRE ARTSVFAWEAADRGQ+VHPVADPSQAEMLRKKFD+KKTTLKEEQKQRILDKYGG+EHL+VPD+RLL GQTE+YVEYDRTGR+VKGAPKAVAKSKYEE+VFP NH SVWGSYFDKRSMRWGF CCHSL +SYCTGE GK+ANDEANSVLNVD AG+RKMLEGR+EG+ KV
Sbjct: 299 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIRYTGDVREQARTSVFAWEAADRGQEVHPVADPSQAEMLRKKFDDKKTTLKEEQKQRILDKYGGSEHLDVPDARLLVGQTESYVEYDRTGRVVKGAPKAVAKSKYEENVFPSNHTSVWGSYFDKRSMRWGFSCCHSLTFKSYCTGEEGKVANDEANSVLNVDLAGERKMLEGRKEGEASKV 548
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA) HSP 1 Score: 327 bits (838), Expect = 1.770e-105 Identity = 156/232 (67.24%), Postives = 187/232 (80.60%), Query Frame = 1
Query: 13 QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVP----DSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVL 696
QGRVARQGGLGGAQM TTVRNLRIREDRAKYLYNLDP+SAYYDPKTRAMR+NP AN E+L +AGDNF+RY G V++ ART V+AWEAA RGQ++HPVADPSQAE+L ++F+ +K LK +Q+ RIL+KYGG D RL GQ+E YVEYDR GR++KGA +AVA+SKYEEDV PGNH SVWGSY+++R+ RWGF CCH+L +YCTG AG+ ANDEAN +
Sbjct: 262 QGRVARQGGLGGAQMATTVRNLRIREDRAKYLYNLDPDSAYYDPKTRAMRENPNPSANPEELAYAGDNFMRYGGGVKDFARTQVYAWEAAARGQELHPVADPSQAELLHRQFEARKDALKGDQRTRILEKYGGXXXXAAGEGGIDPRLALGQSEAYVEYDRAGRVIKGAAQAVARSKYEEDVVPGNHASVWGSYYERRAGRWGFACCHALSRAAYCTGAAGRAANDEANDAV 493
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A8K1CDK9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDK9_PYTOL) HSP 1 Score: 303 bits (776), Expect = 1.080e-96 Identity = 147/245 (60.00%), Postives = 181/245 (73.88%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDK 753
R+ARQGG+GGAQM TTVRNLRIRED AKYL NL+P SAYYDPKTR+MRDNP + N ED F GDN +R+TGD ++ A T +FAWEA +G D+HP A PSQAE LRK+F+E+K L+ E+ ++ILDKYGG EHL+ P LL QTENYVEY R GR+VKG +A A+SKY EDV+ NH +VWGS+FD+R M WG+ CCHS + SYCTGE GK A EA ++N +R ML+ + DK
Sbjct: 239 RIARQGGVGGAQMMTTVRNLRIREDTAKYLRNLNPESAYYDPKTRSMRDNPNPEMNPEDTTFIGDNVVRHTGDAQKLATTQLFAWEAYAKGADIHPQATPSQAEFLRKQFEERKAALEREKSKKILDKYGGQEHLQAPPKELLLAQTENYVEYSRDGRVVKGQERAKARSKYVEDVYENNHTAVWGSWFDRREMAWGYGCCHSKVRNSYCTGEEGKQAL-EAAKIVNT----ERPMLQAVERTDK 478
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: K3X5L6_GLOUD (Pre-mRNA-splicing factor SLU7 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5L6_GLOUD) HSP 1 Score: 303 bits (777), Expect = 1.590e-96 Identity = 145/237 (61.18%), Postives = 182/237 (76.79%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKML 729
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED + GDN +R+TGD ++ A +FAWEA +G D+HP+A+PSQAE L+K+F+EKK L++E+ ++ILDKYGG +HLE P LL QTE+YVEY R GR+VKG +A KSKY EDVF NH ++WGS+FD+ M WG+ CCHS + +SYCTGE GK A + + +NV A QR+ML
Sbjct: 267 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYLGDNVVRFTGDAQKLASAQLFAWEAYAKGTDIHPLANPSQAEFLKKQFEEKKAALEKEKSRKILDKYGGQQHLEAPPKELLLAQTEHYVEYSRDGRVVKGLERAPIKSKYVEDVFENNHTAIWGSWFDRSEMAWGYSCCHSKVRKSYCTGEDGKKAIEAS---MNVSA--QRQML 498
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: H3G9I3_PHYRM (Pre-mRNA-splicing factor SLU7 n=6 Tax=Phytophthora TaxID=4783 RepID=H3G9I3_PHYRM) HSP 1 Score: 298 bits (764), Expect = 1.060e-94 Identity = 142/237 (59.92%), Postives = 178/237 (75.11%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKML 729
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED F GDN R+TGD ++ A +FAWEA +G D+HP+A+PSQAE L+K+++E+K L++E+ ++ILDKYGG EHLE P LL Q+E+YVEY R GR+VKG +A +SKY ED F NH S+WGS+FD+ M WG+ CCHS + +SYCTG+ GK A +EA S A +R ML
Sbjct: 246 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNTARFTGDAQKLASAQLFAWEAYSKGTDIHPLANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEHLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYVEDSFENNHTSIWGSWFDRSEMAWGYGCCHSKVRKSYCTGDDGKKALEEAKS-----ANAERPML 477
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: W2PIB2_PHYPN (Pre-mRNA-splicing factor SLU7 n=12 Tax=Phytophthora TaxID=4783 RepID=W2PIB2_PHYPN) HSP 1 Score: 297 bits (761), Expect = 3.380e-94 Identity = 136/225 (60.44%), Postives = 173/225 (76.89%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSV 693
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED F GDN R+TGD ++ A +FAWEA +G D+HP+A+PSQAE L+K+++E+K L++E+ ++ILDKYGG E+LE P LL Q+E+YVEY R GR+VKG +A +SKY ED F NH S+WGS+FD+ M WG+ CCHS + +SYCTGE GK A +E+ +
Sbjct: 251 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNMTRFTGDAQKLASAQLFAWEAYSKGTDIHPIANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEYLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYVEDAFENNHTSIWGSWFDRTEMAWGYACCHSKVRKSYCTGEDGKKAIEESKTT 475
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A484DY55_BRELC (Pre-mRNA-splicing factor SLU7 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY55_BRELC) HSP 1 Score: 297 bits (760), Expect = 4.650e-94 Identity = 143/234 (61.11%), Postives = 177/234 (75.64%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDE---ANS---VLNV 702
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED F GDN R+TGD ++ A +FAWEA +G D+HP+A+PSQAE L+K+++E+K L++E+ +IL+KYGG EHLE P LL QTE+YVEY R G +VKG +A A+SKY ED F NH +WGS+FD+ +M WG+ CCHS + +SYCTGEAG A DE ANS +LNV
Sbjct: 251 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNMTRFTGDAQKLASAQLFAWEAYSKGTDIHPLANPSQAEFLKKQYEERKALLEKEKSSKILEKYGGQEHLEAPPKELLLAQTEHYVEYSRDGHVVKGRERASARSKYVEDSFENNHTQIWGSWFDRTAMLWGYACCHSKVRKSYCTGEAGIQAADESYIANSERPMLNV 484
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A3M6VBJ9_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VBJ9_9STRA) HSP 1 Score: 293 bits (750), Expect = 1.780e-92 Identity = 136/227 (59.91%), Postives = 171/227 (75.33%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLN 699
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSA+YDPKTR+MRDNP + N ED F GDN RYTGD ++ A +FAWEA +G D+H +A+PSQAE L+K+++E+K L++E+ ++ILDKYGG EHLE P LL Q+E+YVEY R GR+VKG +A +SKY EDVF NH S+WGS+FD+ M WG+ CCHS +SYCTG+ GK A + S +
Sbjct: 256 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAFYDPKTRSMRDNPNPELNPEDTTFIGDNMARYTGDAQKLASAQLFAWEAYSKGTDIHSLANPSQAEFLKKQYEERKAALEKEKSRKILDKYGGQEHLEAPPKELLLAQSEHYVEYSRDGRVVKGRERAPVRSKYIEDVFENNHTSIWGSWFDRSEMAWGYACCHSKARKSYCTGDDGKKALHDLQSTYS 482
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A2D4C2G9_PYTIN (Pre-mRNA-splicing factor SLU7 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2G9_PYTIN) HSP 1 Score: 293 bits (749), Expect = 2.210e-92 Identity = 138/231 (59.74%), Postives = 170/231 (73.59%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAA 711
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED F GDN +R++GD A T +FAWEA +G ++HP A PSQAE LRK+F+E+K L++E+ + ILDKYGG EHL+ P LL Q+E+YVEY R GR+ +G +A +SKY EDV NH SVWGS+FD+ M WG+ CCHS + +SYCTGE GK A + A N + A
Sbjct: 246 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTFVGDNIVRHSGDAARLAATQLFAWEAYAKGAEIHPQATPSQAEFLRKQFEERKAALEKEKARSILDKYGGQEHLQAPPRELLLAQSEHYVEYTRDGRVARGQERAKVRSKYVEDVLEQNHTSVWGSWFDRNDMAWGYACCHSKVRKSYCTGEEGKQAIEAARHAQNTERA 476
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Match: A0A0P1B6R9_PLAHL (Pre-mRNA-splicing factor SLU7 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6R9_PLAHL) HSP 1 Score: 289 bits (740), Expect = 3.090e-92 Identity = 137/247 (55.47%), Postives = 178/247 (72.06%), Query Frame = 1
Query: 19 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMADANAEDLVFAGDNFIRYTGDVREHARTSVFAWEAADRGQDVHPVADPSQAEMLRKKFDEKKTTLKEEQKQRILDKYGGAEHLEVPDSRLLAGQTENYVEYDRTGRIVKGAPKAVAKSKYEEDVFPGNHLSVWGSYFDKRSMRWGFECCHSLMLRSYCTGEAGKIANDEANSVLNVDAAGQRKMLEGRQEGDKPK 759
RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP + N ED + GDN R+TGD ++ A +FAWEA +G D+HP+A+PSQAE L+K+++++K L++E+ +IL KYGG +HLE P LL Q+E+YVEY GR++KG +A+ +SKY ED F NH +WGS+FD+ M WG+ CCHS + SYCTGE G A EA SV +R ML+ ++ D+ K
Sbjct: 148 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNMTRFTGDAQKLASAQLFAWEAYAKGTDIHPIANPSQAEFLKKQYEKRKAALEKEKSSKILAKYGGQQHLEAPPKELLLAQSEHYVEYSSDGRVIKGRERALVRSKYIEDAFENNHTKIWGSWFDRSDMMWGYACCHSKVRNSYCTGEDGIKALKEAKSVNT-----ERPMLKVLEKSDREK 389 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48791.12047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48791.12047.1 >prot_H-elongata_contig48791.12047.1 ID=prot_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp NVHHQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTback to top mRNA from alignment at H-elongata_contig48791:148..3769+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48791.12047.1 ID=mRNA_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3622bp|location=Sequence derived from alignment at H-elongata_contig48791:148..3769+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48791:148..3769+ >mRNA_H-elongata_contig48791.12047.1 ID=mRNA_H-elongata_contig48791.12047.1|Name=mRNA_H-elongata_contig48791.12047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig48791:148..3769+ (Himanthalia elongata Himel1 dioecious)back to top |