mRNA_H-elongata_contig48684.12031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48684.12031.1
Unique NamemRNA_H-elongata_contig48684.12031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A6H5K8V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.310e-21
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 LTTTNPTAQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            L T+NPTAQELGN+TQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH
Sbjct:  203 LATSNPTAQELGNATQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 249
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A0P1B1J7_PLAHL (Spliceosome subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1J7_PLAHL)

HSP 1 Score: 64.3 bits (155), Expect = 6.860e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   22 AQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            A  L +S  QKLRVCD+CGA LSIFDS  RLA+HFGGKLH
Sbjct:  171 ATNLVDSVNQKLRVCDVCGAFLSIFDSEKRLADHFGGKLH 210
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: D8SV26_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SV26_SELML)

HSP 1 Score: 64.3 bits (155), Expect = 6.990e-11
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   13 NPTAQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            N   Q+   +T QKLRVCDICGA LSI+DS+ RLA+HFGGKLH
Sbjct:  252 NKVLQQDARATDQKLRVCDICGAYLSIYDSDRRLADHFGGKLH 294
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: UPI00125E6C30 (putative RNA-binding protein Luc7-like 1 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E6C30)

HSP 1 Score: 61.6 bits (148), Expect = 1.190e-10
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   43 TQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            T QKLRVCDICGA LS++DS+ RLA+HFGGKLH
Sbjct:   10 TDQKLRVCDICGAFLSVYDSDRRLADHFGGKLH 42
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A507E6Z9_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E6Z9_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 1.350e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   34 GNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            GNS QQKLRVC++C A LSIFDS+ RLA+HFGGK+H
Sbjct:  177 GNSQQQKLRVCEVCSAYLSIFDSDRRLADHFGGKMH 212
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A0L0HNF5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNF5_SPIPD)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   34 GNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            GNS QQKLRVC++C A LSIFDS+ RLA+HFGGK+H
Sbjct:  177 GNSQQQKLRVCEVCSAYLSIFDSDRRLADHFGGKMH 212
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A7S4IWW2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IWW2_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-10
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 TTTNPTAQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            TT +PT    G + Q+KLRVC+IC A LSI+DSN RLA+HFGGKLH
Sbjct:   88 TTLDPTGSR-GPTQQEKLRVCEICSAFLSIYDSNRRLADHFGGKLH 132
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: F2U5M3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5M3_SALR5)

HSP 1 Score: 63.2 bits (152), Expect = 1.920e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   34 GNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            G  TQQKLRVC+ICG  LSIFD++ RLA+HFGGKLH
Sbjct:  180 GKQTQQKLRVCEICGCFLSIFDNDRRLADHFGGKLH 215
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BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A8K1CCH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH2_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 1.980e-10
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   22 AQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            A   G +  QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH
Sbjct:  203 AASSGPNVNQKLRVCDVCGAFLSIFDSDRRLADHFGGKLH 242
[Close]
BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Match: A0A2D4CIP8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIP8_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-10
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   22 AQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH 141
            A    +S  QKLRVCD+CGA LSIFDS+ RLA+HFGGKLH
Sbjct:  118 ADAKASSVNQKLRVCDVCGAFLSIFDSDRRLADHFGGKLH 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48684.12031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8V8_9PHAE1.310e-2193.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1B1J7_PLAHL6.860e-1172.50Spliceosome subunit n=1 Tax=Plasmopara halstedii T... [more]
D8SV26_SELML6.990e-1167.44Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
UPI00125E6C301.190e-1078.79putative RNA-binding protein Luc7-like 1 n=1 Tax=I... [more]
A0A507E6Z9_9FUNG1.350e-1075.00Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A0L0HNF5_SPIPD1.370e-1075.00Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7S4IWW2_9EUKA1.430e-1065.22Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
F2U5M3_SALR51.920e-1075.00Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8K1CCH2_PYTOL1.980e-1070.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIP8_PYTIN2.140e-1070.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48684contigH-elongata_contig48684:3021..4138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog88036.EFJ11722
EggNOG free text desc.RNA-binding protein Luc7-like
EggNOG OGs37NEA@33090,3G8M0@35493,COG5200@1,KOG0796@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionLuc7-related
Ec32 orthologEc-26_003430.2
Exons2
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.7662892-CDS-H-elongata_contig48684:3020..30391622930801.7662892-CDS-H-elongata_contig48684:3020..3039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48684 3021..3039 -
1691679576.2335007-CDS-H-elongata_contig48684:3020..30391691679576.2335007-CDS-H-elongata_contig48684:3020..3039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48684 3021..3039 -
1622930801.784226-CDS-H-elongata_contig48684:4016..41381622930801.784226-CDS-H-elongata_contig48684:4016..4138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48684 4017..4138 -
1691679576.2436302-CDS-H-elongata_contig48684:4016..41381691679576.2436302-CDS-H-elongata_contig48684:4016..4138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48684 4017..4138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48684.12031.1prot_H-elongata_contig48684.12031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48684 3021..4138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48684.12031.1

>prot_H-elongata_contig48684.12031.1 ID=prot_H-elongata_contig48684.12031.1|Name=mRNA_H-elongata_contig48684.12031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
LTTTNPTAQELGNSTQQKLRVCDICGALLSIFDSNDRLAEHFGGKLH
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mRNA from alignment at H-elongata_contig48684:3021..4138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48684.12031.1 ID=mRNA_H-elongata_contig48684.12031.1|Name=mRNA_H-elongata_contig48684.12031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-elongata_contig48684:3021..4138- (Himanthalia elongata Himel1 dioecious)
TTAACCACGACCAATCCTACCGCGCAAGAGCTGGGAAACTCGACCCAGCA
AAAGCTTCGCGTGTGCGATATCTGCGGGGCCCTCCTGTCGATCTTCGACT
CCAACGACCGTCTGGCTGAGCAGTTGAGTCAAGGATTCCCTCTATCCCAA
CAGAGTTGCTAGTTGAGAGGGTTTAGGTTGGCTCAGTGAAGGATTGTACG
AGATTGGTCGCTACCCAAGAGGCCATTATCGTGGTTTGGTTATAGCTATC
GTGCGGAAATTTTCTTGGGATATTCTTCTCGGCAAGCGTTCGTTTACGTA
GAGTCTGATTTCCGTACGATTCGAGGTTGGACGGGCGAGCGATATTCATT
TAATGACGAACGAAGAGGGTAAAAACGAGTGACGCACTGGATGAATCTTC
GCTGCGGCAGAGAGGGTATTAAACTGACCGGAATGCCGTTGAGCCTCTGG
GAAAACATGCGTGCGGGCGTGATGAGCGGCGTCGCACCCAAGAAGGGAGA
GCACGATGGTTAGCCTCTTCTCATTAGCACGAAGCAAGAGCGTCTTCGAC
GCGAGAAGCCTTGAGCGCGGAGCGGTAGTAGAAAGGATCGTGAGGACGGG
GGGGGGTTGTTCGTAGCGTCAGTCGAGGCTGGGTGGCGCACGCGGCGCGC
ATGACCGATCGCAGGGTGCGGCTTACGAACAGTGTGATGGACTCTAAAGA
GCGATGTGACGGCGGGACTGTCGGCACGGGCTAGGGGCGAAGGAATAGTG
GTTGCGCTTTACCGTCAGGCCTTCTGGAAACGCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCTCCCCCCGGGGGAAAAAACACCCCCCCCCCCCCCCCCC
TTTCTACCCATCTTCCCTTTTTTTTNNNNNNNNNNTACCGTCAGGCCTTC
TGGAAACGCCCGCCCGCCCTCCCTCCCTCTGCCCTTCTCCCCGGGGAAGA
AATGACCCCCCCCCACACCGCCTATTTTACCATTCTTCACCTTTGTTGAC
ACCATCATCGCCCAATGAAACACCGAGATATTTTATGGCTGTCTTGTACT
TGCCGCTGTCATTTTTTCGGCTTTCTCTTATCGGCTCGCGAAATAAAAGC
TTCGGGGGAAAGCTGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig48684:3021..4138-

>mRNA_H-elongata_contig48684.12031.1 ID=mRNA_H-elongata_contig48684.12031.1|Name=mRNA_H-elongata_contig48684.12031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig48684:3021..4138- (Himanthalia elongata Himel1 dioecious)
TTAACCACGACCAATCCTACCGCGCAAGAGCTGGGAAACTCGACCCAGCA
AAAGCTTCGCGTGTGCGATATCTGCGGGGCCCTCCTGTCGATCTTCGACT
CCAACGACCGTCTGGCTGAGCATTAACCACGACCAATCCTACCGCGCAAG
AGCTGGGAAACTCGACCCAGCAAAAGCTTCGCGTGTGCGATATCTGCGGG
GCCCTCCTGTCGATCTTCGACTCCAACGACCGTCTGGCTGAGCACTTCGG
GGGAAAGCTGCACCTTCGGGGGAAAGCTGCAC
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