mRNA_H-elongata_contig4868.12028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4868.12028.1
Unique NamemRNA_H-elongata_contig4868.12028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: D7FLJ8_ECTSI (Acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ8_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 5.840e-62
Identity = 122/200 (61.00%), Postives = 149/200 (74.50%), Query Frame = 1 
Query:   58 AQITVRRAMEADFEGVAGIRGIVIPVGMSGATGFLGGKVVIDDPEEARRRELMSKVADLVSREAVALIALERGVIVGTVDCITQTSEK------RPTERTEGGKSTPRSRVFLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYLACGFEEEKSPFPRENGWGRALSESLGIGKLNMVKRI 639
            A++TVRRA E D++GVA IRG++IPVGMSGATGFLGGKVVIDDP EA RR LM+KVADLVS E+VALIALE   IVGTVDCI +++        +P ++ E  K+   + VFLKNLFVLPE RR+G+AR+LV GAE  AR+EK    + L+VAR+N  AR LYL+CGFEE + P P E G G AL  SLG+GK  MVK +
Sbjct:  135 ARVTVRRAREPDYQGVAEIRGVIIPVGMSGATGFLGGKVVIDDPAEAERRLLMAKVADLVSGESVALIALEGQRIVGTVDCIIRSAAATVDTLGQPKQQPEIPKA---NEVFLKNLFVLPERRRQGIARELVNGAEVFARQEKA-RTVCLDVARQNDAARELYLSCGFEEAERPGPIEGGMGGALLRSLGMGKKYMVKGV 330
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A835WFY0_9CHLO (N-acetyltransferase domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WFY0_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.590e-6
Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  265 LERGVIVGTVDCITQTSEKRPTERTEGG--KSTPRSR-VFLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYL-ACGFEEEKSPFPRENGWGRALSES--LGIGK 618
            + R ++VG++D         P+E   G   K  PR R  +L N+ V P  RR GVAR L++ AEE ARR KGVE L + V   N PA  LY  ACGF+ E++      G+ R+L     L +GK
Sbjct:   88 VSRQLVVGSLDL--NVGHTLPSEELIGKQPKEDPRHRRAYLSNVCVAPAARRLGVARALLRLAEEEARR-KGVEWLYVHVVADNVPAVALYCEACGFQVEQA---ESEGYARSLQRPRRLILGK 205
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A7S3UM30_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM30_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.040e-5
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = 1 
Query:  214 MSKVADLVSREAVALIALER-GVIVGTVDCITQTSEKRPTERTEGGKSTPRSRVFLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYLACGFEEEKSPFPRENGWGRALSESLGIGKLNMVKRI 639
            + K+  + S + V L+ALE    IVG++D     + K P     GG    +  VF+KN+ V PE RRRG+A +L+  A   ARRE+    L L V   NA A  LY + GF+  K   P +  + + L+ +LG+  + M K I
Sbjct:   45 LGKIKSIESGKEVCLVALEGPDEIVGSLDL----AVKVPAA---GGPPGEKPVVFVKNVMVNPEKRRRGIATRLLDEAVRYARRERRAGRLELTVLVGNAGALLLYESYGFK--KMARPGDGTFLKRLT-ALGVEDILMFKDI 177
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A534K0Y6_9EURY (GNAT family N-acetyltransferase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534K0Y6_9EURY)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-5
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:  340 EGGKSTPRSRVFLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYLACGFEEEK 555
            E G  TP +  F+ +++V+PEHR +GV + LV+ A E AR+ +G   + LEVA  NA AR +Y + GF  E+
Sbjct:  106 ESGFLTPETHAFIYDIWVVPEHRGKGVGKSLVEWAGEWARK-RGHRKIKLEVAETNARARHVYESLGFRAER 176
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A562BTE7_9GAMM (L-amino acid N-acyltransferase YncA n=1 Tax=Luteimonas sp. J16 TaxID=935283 RepID=A0A562BTE7_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 7.630e-5
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  373 FLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYLACGFEEEKSPF 564
             L +LFVLP+ RRRGVAR+L+  A + AR E G   + LE AR N  AR  Y A G+ E+ + +
Sbjct:   80 ILNDLFVLPQMRRRGVARRLLDAAADFAR-EDGAAWIQLETARDNEAARATYRAAGWREDATQW 142
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A835T3G6_CHLIN (N-acetyltransferase domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T3G6_CHLIN)

HSP 1 Score: 54.7 bits (130), Expect = 8.830e-5
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  265 LERGVIVGTVDCITQTSEKRPTERTEGG--KSTPRSR-VFLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYL-ACGFEEEKSPFPRENGWGRAL 594
            + R ++VG++D         P+E   G   K  PR R  +L N+ V P  RR GVAR L++ AEE ARR KGVE L + V   N PA  LY  A GFE E++      G+ R+L
Sbjct:  181 VSRQLVVGSLDL--NVGHTLPSEELIGKQPKEDPRHRRAYLSNVCVAPAARRLGVARALLRVAEEEARR-KGVEWLYVHVVADNQPAVALYCGAMGFEVEQA---ESEGYARSL 288
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BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Match: A0A5C1DMN4_9NEIS (Aminoglycoside N(6')-acetyltransferase type 1 n=2 Tax=Chromobacterium paludis TaxID=2605945 RepID=A0A5C1DMN4_9NEIS)

HSP 1 Score: 52.4 bits (124), Expect = 9.820e-5
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  355 TPRSRV-FLKNLFVLPEHRRRGVARQLVKGAEELARREKGVEALSLEVARKNAPARGLYLACGFEE 549
            T RS V F++ L+V PEHRR GVA QL++ A+E AR ++G   L+ + A  N  A+  +LA GFEE
Sbjct:   72 TARSPVAFVEGLYVAPEHRRGGVAAQLLRAAQEWAR-QRGCAELASDTALDNLAAQAAHLALGFEE 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4868.12028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLJ8_ECTSI5.840e-6261.00Acetyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835WFY0_9CHLO3.590e-640.32N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S3UM30_HETAK1.040e-535.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A534K0Y6_9EURY1.580e-543.06GNAT family N-acetyltransferase n=1 Tax=Euryarchae... [more]
A0A562BTE7_9GAMM7.630e-546.88L-amino acid N-acyltransferase YncA n=1 Tax=Luteim... [more]
A0A835T3G6_CHLIN8.830e-541.23N-acetyltransferase domain-containing protein n=1 ... [more]
A0A5C1DMN4_9NEIS9.820e-548.48Aminoglycoside N(6')-acetyltransferase type 1 n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4868contigH-elongata_contig4868:4560..6013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1049
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4868.12028.1prot_H-elongata_contig4868.12028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4868 4560..5606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.4889219-CDS-H-elongata_contig4868:4559..47811622930801.4889219-CDS-H-elongata_contig4868:4559..4781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 4560..4781 +
1691679576.0880818-CDS-H-elongata_contig4868:4559..47811691679576.0880818-CDS-H-elongata_contig4868:4559..4781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 4560..4781 +
1622930801.5136294-CDS-H-elongata_contig4868:5186..56061622930801.5136294-CDS-H-elongata_contig4868:5186..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 5187..5606 +
1691679576.101836-CDS-H-elongata_contig4868:5186..56061691679576.101836-CDS-H-elongata_contig4868:5186..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 5187..5606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.528791-UTR-H-elongata_contig4868:5606..60131622930801.528791-UTR-H-elongata_contig4868:5606..6013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 5607..6013 +
1691679576.1136806-UTR-H-elongata_contig4868:5606..60131691679576.1136806-UTR-H-elongata_contig4868:5606..6013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 5607..6013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4868.12028.1

>prot_H-elongata_contig4868.12028.1 ID=prot_H-elongata_contig4868.12028.1|Name=mRNA_H-elongata_contig4868.12028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MAAAAMAAIAATAWPPRNNAQITVRRAMEADFEGVAGIRGIVIPVGMSGA
TGFLGGKVVIDDPEEARRRELMSKVADLVSREAVALIALERGVIVGTVDC
ITQTSEKRPTERTEGGKSTPRSRVFLKNLFVLPEHRRRGVARQLVKGAEE
LARREKGVEALSLEVARKNAPARGLYLACGFEEEKSPFPRENGWGRALSE
SLGIGKLNMVKRI*
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mRNA from alignment at H-elongata_contig4868:4560..6013+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4868.12028.1 ID=mRNA_H-elongata_contig4868.12028.1|Name=mRNA_H-elongata_contig4868.12028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1454bp|location=Sequence derived from alignment at H-elongata_contig4868:4560..6013+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGGCGGCGATGGCAGCAATAGCGGCGACCGCGTGGCCTCCACG
AAATAATGCGCAAATCACGGTACGCCGCGCGATGGAGGCGGACTTCGAGG
GGGTAGCGGGGATAAGGGGGATTGTCATTCCGGTGGGTATGAGCGGGGCG
ACCGGATTCTTGGGGGGAAAAGTTGTCATCGACGATCCCGAAGAGGCTAG
GAGGAGGGAGCTAATGTCCAAGGTGCGCGTGCTTTTTGCCGTGGTGAAAC
CGCTGCTGTTTAATCAGTTGGCTGATCGAGGGAAGTTAGGAAGGCGGTGG
TTTCTTAATTCGGCGTGGGGGTCGCCATCCGTGGCACGCTGCAGCTTGTT
TCGTGTATTCTCCAGTATGGATGTGGGTCTTGTACTACTAATATTATATT
TATCATGGTGGCGTGCGGCGGTGTCGCCTCGTTGCGCTCTACATAATATT
ATATGCTTTTTGTGTTCGCATCGTCTTCACGTTGATATTAACTGGATCGT
TTATCGACCGACTGGCTGGTTATACGCGGCATTTTGAACGCAGCTCGAAC
GATCGCGCCAACAAAGCTGTTAGCTGGTCAATCCACGCCCCCTTACGTTT
AAATATCTGTCGCAACACGTCGGGCAGGTGGCTGACCTCGTCAGCAGGGA
AGCCGTTGCCCTGATTGCTCTTGAACGAGGAGTCATCGTCGGCACAGTCG
ATTGCATCACTCAGACGTCGGAAAAGAGACCCACAGAGAGAACCGAGGGG
GGTAAGAGTACGCCGCGGTCGCGGGTGTTCCTAAAGAATCTGTTCGTGCT
ACCGGAGCACAGGAGACGTGGGGTTGCCCGCCAACTCGTAAAGGGGGCGG
AGGAATTAGCGAGACGGGAAAAAGGCGTCGAGGCCCTTTCCCTCGAGGTG
GCCCGCAAGAACGCGCCCGCGAGGGGGCTTTATCTCGCTTGTGGCTTCGA
GGAGGAGAAATCGCCTTTCCCGAGGGAGAATGGATGGGGGCGGGCGCTCT
CTGAATCGCTCGGTATCGGCAAACTTAATATGGTCAAACGTATTTGATCT
TCGGCGCGCGAATTTGTGCATACAGTGAAGCAACTCGTGGTGGGAAGTCG
GAGACGCTTAGATGATTGGAAAGCTGTGAATCGCTTATTTATGATACGGC
AGGATGCTGAAGTTAGGCTTCGATAGAGGGGGCGTTTAGCGACCTTCGTC
GCAGTAGGTGGATGGGGGCGGCGATGGCGAAATTGGTGATGAACGACGGC
GGCGCACTATTCTGAACTGAACATGCGAGTCGTCTATTCGGGATCAGAGA
GCAGGGACGTCTTCCTGCTGTTTCTGCGGTACAGTATCCCGAAGAGCGCC
TCGATAATTTTCAGACAGCTTGGACACTACGCGACTACGTGAAGAGGAAC
CCTTATTTGAGAAACGGAAATGTTTAACCTCGTGTGGCTGGCGAAAGGGC
CCCC
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Coding sequence (CDS) from alignment at H-elongata_contig4868:4560..6013+

>mRNA_H-elongata_contig4868.12028.1 ID=mRNA_H-elongata_contig4868.12028.1|Name=mRNA_H-elongata_contig4868.12028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig4868:4560..6013+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGGCGGCGATGGCAGCAATAGCGGCGACCGCGTGGCCTCCACG
AAATAATGCGCAAATCACGGTACGCCGCGCGATGGAGGCGGACTTCGAGG
GGGTAGCGGGGATAAGGGGGATTGTCATTCCGGTGGGTATGAGCGGGGCG
ACCGGATTCTTGGGGGGAAAAGTTGTCATCGACGATCCCGAAGAGGCTAG
GAGGAGGGAGCTAATGTCCAAGATGGCAGCGGCGGCGATGGCAGCAATAG
CGGCGACCGCGTGGCCTCCACGAAATAATGCGCAAATCACGGTACGCCGC
GCGATGGAGGCGGACTTCGAGGGGGTAGCGGGGATAAGGGGGATTGTCAT
TCCGGTGGGTATGAGCGGGGCGACCGGATTCTTGGGGGGAAAAGTTGTCA
TCGACGATCCCGAAGAGGCTAGGAGGAGGGAGCTAATGTCCAAGGTGGCT
GACCTCGTCAGCAGGGAAGCCGTTGCCCTGATTGCTCTTGAACGAGGAGT
CATCGTCGGCACAGTCGATTGCATCACTCAGACGTCGGAAAAGAGACCCA
CAGAGAGAACCGAGGGGGGTAAGAGTACGCCGCGGTCGCGGGTGTTCCTA
AAGAATCTGTTCGTGCTACCGGAGCACAGGAGACGTGGGGTTGCCCGCCA
ACTCGTAAAGGGGGCGGAGGAATTAGCGAGACGGGAAAAAGGCGTCGAGG
CCCTTTCCCTCGAGGTGGCCCGCAAGAACGCGCCCGCGAGGGGGCTTTAT
CTCGCTTGTGGCTTCGAGGAGGAGAAATCGCCTTTCCCGAGGGAGAATGG
ATGGGGGCGGGCGCTCTCTGAATCGCTCGGTATCGGCAAACTTAATATGG
TCAAACGTATTTGAGTGGCTGACCTCGTCAGCAGGGAAGCCGTTGCCCTG
ATTGCTCTTGAACGAGGAGTCATCGTCGGCACAGTCGATTGCATCACTCA
GACGTCGGAAAAGAGACCCACAGAGAGAACCGAGGGGGGTAAGAGTACGC
CGCGGTCGCGGGTGTTCCTAAAGAATCTGTTCGTGCTACCGGAGCACAGG
AGACGTGGGGTTGCCCGCCAACTCGTAAAGGGGGCGGAGGAATTAGCGAG
ACGGGAAAAAGGCGTCGAGGCCCTTTCCCTCGAGGTGGCCCGCAAGAACG
CGCCCGCGAGGGGGCTTTATCTCGCTTGTGGCTTCGAGGAGGAGAAATCG
CCTTTCCCGAGGGAGAATGGATGGGGGCGGGCGCTCTCTGAATCGCTCGG
TATCGGCAAACTTAATATGGTCAAACGTATTTGA
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