mRNA_H-elongata_contig48649.12025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48649.12025.1
Unique NamemRNA_H-elongata_contig48649.12025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: D7G459_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G459_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.650e-23
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWGREGGEMV 207
            YGPSETFAYVYHRM+PA   + +  RVMTE+ +ELP  NPR+MLDFGSGPGT+ALA W+VWG  GG  V
Sbjct:  203 YGPSETFAYVYHRMMPA---YTVLHRVMTEVTSELPGFNPRTMLDFGSGPGTSALAVWDVWGAGGGSSV 268          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: F4PPB6_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PPB6_CAVFA)

HSP 1 Score: 67.8 bits (164), Expect = 1.370e-11
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWGREGGEMVQ 210
            YGP E  AY  HRM    GV+    RV  E+ + +P+  P++M+D+GSGPGT   +A ++WG EG   +Q
Sbjct:  793 YGPGEALAYAAHRMP---GVYSCTHRVFQEIADRIPNFQPKTMMDYGSGPGTVIWSARQIWGEEGTNSLQ 859          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A4P9ZRH8_9FUNG (Mitochondrial small ribosomal subunit Rsm22-domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZRH8_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 9.750e-10
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWG 186
            YG  ET AY+  R +P  GV      + TEL+  LP   PR+MLDFG+GPGTA  AA   WG
Sbjct:    7 YGDRETNAYLAVRFVPTFGVL---ANLFTELRTRLPQFEPRTMLDFGTGPGTAFWAAHHAWG 65          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A151ZGG0_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZGG0_9MYCE)

HSP 1 Score: 62.0 bits (149), Expect = 1.470e-9
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWG 186
            YG  +  AY+ HRM    GV+    RV +E+   +P+  P++MLDFGSGPGT   +A E+WG
Sbjct:  469 YGKGQVLAYISHRMP---GVYACTHRVFSEIAQRIPNFKPKTMLDFGSGPGTVLWSAKEIWG 527          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: F1A0Z3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0Z3_DICPU)

HSP 1 Score: 60.8 bits (146), Expect = 3.780e-9
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWG 186
            YG  E  AY+ HRM    GV+    RV +E+K  +P+ NP ++LD+GSGPGT   +A  +WG
Sbjct:  484 YGKGEAMAYISHRMP---GVYACTHRVFSEIKTRVPNFNPTTLLDYGSGPGTVLWSASTMWG 542          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A8J4PTE7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTE7_9MYCE)

HSP 1 Score: 60.1 bits (144), Expect = 7.070e-9
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVWG 186
            YG  +  AY+ HR+    GV+    RV +E+    P+  P++MLDFGSGPGT   +A E+WG
Sbjct:  574 YGQGQALAYISHRLP---GVYGCTHRVFSEIATRAPNFKPKTMLDFGSGPGTVIWSAREIWG 632          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A5A8EA27_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EA27_CAFRO)

HSP 1 Score: 58.9 bits (141), Expect = 1.820e-8
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVW 183
            YGP ET AY  HR +P    F +   V  ++   LP   PRSMLDFGSG G+A  AA EVW
Sbjct:  174 YGPEETVAYALHRTLPN---FTVGTAVFEDVAASLPGWQPRSMLDFGSGTGSAIWAAQEVW 231          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A835S208_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S208_VANPL)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-8
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVW 183
            Y   ET AYV  RM PA  V+    RV+ E++  LP+ +P SMLDFGSGPG+A  A  EVW
Sbjct:   12 YKEDETVAYVASRM-PA--VYSACHRVLKEVRRRLPEFSPTSMLDFGSGPGSALWAMREVW 69          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A835S6U9_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S6U9_VANPL)

HSP 1 Score: 57.8 bits (138), Expect = 4.510e-8
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVW 183
            Y   ET AYV  RM PA  V+    RV+ E++  LP+ +P SMLDFGSGPG+A  A  EVW
Sbjct:  109 YKEDETVAYVASRM-PA--VYSACHRVLKEVRRRLPEFSPTSMLDFGSGPGSALWAMREVW 166          
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Match: A0A197KKU9_9FUNG (Rsm22-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KKU9_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 6.240e-8
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGPGTAALAAWEVW 183
            YG  E+ AY+   M P    F   + V+ E+   +PDLNP++ LDFG+GPGTA  AA EVW
Sbjct:  272 YGHRESIAYI-ASMAPT--TFSAIKNVLQEVNKRVPDLNPKTFLDFGTGPGTAIWAANEVW 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48649.12025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G459_ECTSI1.650e-2368.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F4PPB6_CAVFA1.370e-1142.86Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A4P9ZRH8_9FUNG9.750e-1050.00Mitochondrial small ribosomal subunit Rsm22-domain... [more]
A0A151ZGG0_9MYCE1.470e-945.16Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
F1A0Z3_DICPU3.780e-945.16Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A8J4PTE7_9MYCE7.070e-943.55Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A5A8EA27_CAFRO1.820e-850.82Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A835S208_VANPL4.410e-852.46Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835S6U9_VANPL4.510e-852.46Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A197KKU9_9FUNG6.240e-847.54Rsm22-domain-containing protein n=1 Tax=Linnemanni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48649contigH-elongata_contig48649:2647..3267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7G459
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Ribosomal small subunit Rsm22
EggNOG OGsCOG5459@1,KOG2539@2759
EC3.5.2.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-02_001390.1
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.2633731-CDS-H-elongata_contig48649:2646..28061622930801.2633731-CDS-H-elongata_contig48649:2646..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48649 2647..2806 -
1691679575.988873-CDS-H-elongata_contig48649:2646..28061691679575.988873-CDS-H-elongata_contig48649:2646..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48649 2647..2806 -
1622930801.2833831-CDS-H-elongata_contig48649:3217..32671622930801.2833831-CDS-H-elongata_contig48649:3217..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48649 3218..3267 -
1691679576.0022678-CDS-H-elongata_contig48649:3217..32671691679576.0022678-CDS-H-elongata_contig48649:3217..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48649 3218..3267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48649.12025.1prot_H-elongata_contig48649.12025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48649 2647..3267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48649.12025.1

>prot_H-elongata_contig48649.12025.1 ID=prot_H-elongata_contig48649.12025.1|Name=mRNA_H-elongata_contig48649.12025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
YGPSETFAYVYHRMIPAIGVFDLFRRVMTELKNELPDLNPRSMLDFGSGP
GTAALAAWEVWGREGGEMVQ
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mRNA from alignment at H-elongata_contig48649:2647..3267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48649.12025.1 ID=mRNA_H-elongata_contig48649.12025.1|Name=mRNA_H-elongata_contig48649.12025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig48649:2647..3267- (Himanthalia elongata Himel1 dioecious)
TACGGCCCGTCCGAGACCTTCGCGTACGTTTACCACCGGATGATCCCGGC GTACACAGTGATTCACAGGCAAGGAGAGGCACACACACACAATCATTGAT CCCCCCTAGGAGGATCAATACGAGTGGCATAGAAGGACTAGCACGACAGG GCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACGCAC ACACATACATACACAGCCGCAATTAATTTTACGGTTCTGGCTGTAGGACG CGCTATGCGTAACAAAATGACAAAAACCGAATAATCGAACGTTCGATCTA GGCATTGATTTATGTTGCTTGTCAGTCGGTAAGGAGGGAGAGGAGGCGGT GTACTTCAAGCTTGGAATGCTTTAGCTGTTATATCATTTGACCACTGACC ATGCATCCTCGGGAGGACGAAGCCTTGTTGTTTCATGATCGATCTCGACG ATCACCAAAAGTATTGGTGTATTCGATCTTTTCCGCAGGGTGATGACGGA GCTGAAGAACGAGCTGCCAGACCTGAATCCCAGGAGCATGCTCGATTTCG GAAGCGGGCCTGGCACGGCGGCGCTGGCGGCGTGGGAGGTGTGGGGGAGG GAAGGCGGCGAAATGGTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig48649:2647..3267-

>mRNA_H-elongata_contig48649.12025.1 ID=mRNA_H-elongata_contig48649.12025.1|Name=mRNA_H-elongata_contig48649.12025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig48649:2647..3267- (Himanthalia elongata Himel1 dioecious)
TACGGCCCGTCCGAGACCTTCGCGTACGTTTACCACCGGATGATCCCGGC
TACGGCCCGTCCGAGACCTTCGCGTACGTTTACCACCGGATGATCCCGGC
TATTGGTGTATTCGATCTTTTCCGCAGGGTGATGACGGAGCTGAAGAACG
AGCTGCCAGACCTGAATCCCAGGAGCATGCTCGATTTCGGAAGCGGGCCT
GGCACGGCGGCGCTGGCGGCGTGGGAGGTGTGGGGGAGGGAAGGCGGCGA
AATGGTGCAGTATTGGTGTATTCGATCTTTTCCGCAGGGTGATGACGGAG
CTGAAGAACGAGCTGCCAGACCTGAATCCCAGGAGCATGCTCGATTTCGG
AAGCGGGCCTGGCACGGCGGCGCTGGCGGCGTGGGAGGTGTGGGGGAGGG
AAGGCGGCGAAATGGTGCAG
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