prot_H-elongata_contig115069.1201.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115069.1201.1
Unique Nameprot_H-elongata_contig115069.1201.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length144
Homology
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-18
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 144
            +L+GC TWT+      KL   H   L + L      +  PD       EVL+R D   I   + +  L +AG VARM D+RLP +++ GE+  GKR +G   KR +  +     AF INP  W  AAQD  +W   ++ GA+ +
Sbjct:  775 LLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PD------TEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 5.740e-15
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 144
            +LYG  TWTL      KL EA +   LR +         P      + EVL R  C  +++ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   +  G + F
Sbjct:  237 LLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 373          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 7.190e-15
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 144
            +LYG  TWTL      KL EA +   LR +         P      + EVL R  C  +++ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   +  G + F
Sbjct:  523 LLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 659          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-14
Identity = 44/144 (30.56%), Postives = 68/144 (47.22%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 144
            +LYG  TWTL      KL EA +   LR +         P      + EVL R  C  +++ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   +  G  + 
Sbjct:  170 LLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 71.6 bits (174), Expect = 2.380e-12
Identity = 41/143 (28.67%), Postives = 62/143 (43.36%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEV 143
            +LY C TWT+      +L   H   L + +         PD       EVL R +   +   + K    +AG V RM D R+P +++ GE+  GKR  G+P  R +  +     +  I    W   A D P+W   V  GA++
Sbjct:   52 LLYACETWTVYSRHARQLNHFHTTCLRKLMRIRWQDHI-PD------TEVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQL 187          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 67.0 bits (162), Expect = 3.290e-10
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEH 107
            +LYG  TWTL      KL E  +   LR +         P      + EVL R  C  I++ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR  H
Sbjct:  253 LLYGGETWTLYARHIKKL-EVFQQRSLRSIMRVNWEEKTP------HSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A7D9IPZ0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IPZ0_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.450e-7
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 0
Query:    1 MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKR 96
            +LYG  TWTL      KL EA +   LR +         P      + EVL R  C  I++ + KR L +AG + RM D+RLP I++ GE+  G R
Sbjct:  714 LLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLEREKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNR 802          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR1.740e-1835.42Reverse transcriptase domain-containing protein n=... [more]
A0A6S7K883_PARCT5.740e-1531.25RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT7.190e-1531.25RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JKI9_PARCT1.380e-1430.56Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8J9Z756_BRALA2.380e-1228.67Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6S7JBE9_PARCT3.290e-1037.38Reverse transcriptase domain-containing protein (F... [more]
A0A7D9IPZ0_PARCT4.450e-737.50Reverse transcriptase domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47027FAMILY NOT NAMEDcoord: 45..141
NoneNo IPR availablePANTHERPTHR47027:SF4coord: 45..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115069contigH-elongata_contig115069:1632..2063 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115069.1201.1mRNA_H-elongata_contig115069.1201.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115069 1632..2087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115069.1201.1 ID=prot_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEV
LLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQ
PAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF
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