mRNA_H-elongata_contig115069.1201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115069.1201.1
Unique NamemRNA_H-elongata_contig115069.1201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 109 bits (273), Expect = 2.480e-27
Identity = 64/167 (38.32%), Postives = 85/167 (50.90%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKR--GQPA-------------KRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 456
            LKAEV+E +LYGCVTWTL+   F KLR AH  +LLR +      R   D+  LSY + L  T CE I+  + KR L +AG V R H+ RLP+ +M G + GG   +  GQP              K  E    +    FG+    W  AA+   +W+R +   AE F
Sbjct:    2 LKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRT--DHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQF 166          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.640e-25
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGA 447
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D+RLP  ++ GEM GG   RG        RV E   AF +  +     W  +A+D+  W+ KVE GA
Sbjct:   44 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.900e-23
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D+RLP  ++ G M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F
Sbjct:  221 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWF 374          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.990e-23
Identity = 61/157 (38.85%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D RLP  ++ G M GG   RG        R+ EY  AF +  +     W  +A+D+  W+ KVE  A  F
Sbjct:  120 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWF 273          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.120e-22
Identity = 61/157 (38.85%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D RLP  ++ G M GG   RG+       R+ E   AF +  +     W  +A+D   W+ KVE GA  F
Sbjct:  171 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGRQESDWVSRLGEDLVAFNMRDEKQGGKWRESAKDPQVWYNKVEYGASWF 324          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.480e-22
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL E HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D+RLP  ++ G M GG   RG        R+ E   AF +  +     W   A+D   W+ KVE GA  F
Sbjct:  465 LQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGAKWKECAKDPEVWYNKVEDGAAWF 618          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.830e-22
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D+RLP  ++ G M GG   RG        R+ E   AF +  +     W  +A+D   W+ KVE GA +F
Sbjct:  633 LQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIG--WSKRQRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGDKWKESAKDPEVWYNKVEDGAALF 786          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JEU3_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.670e-22
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGA 447
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG + RM D RLP  ++ G M GG   RG        R+ E   AF +  +     W  +A+D   W+ KVE GA
Sbjct:  120 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGNIMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGA 270          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.660e-22
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+L+   + KL   HR  L RC+    S R   D   LSY + L++  CE  I+A + KR L +AG V RM D RLP  ++ G M GG   RG        R+ E   AF +  +     W  +A+D   W+ KVE  A  F
Sbjct:   16 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWF 169          
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.340e-21
Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDC-ECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
            L+AEV+E +LYGC +W+LS   + KL   HR  L RC+    S R   D   LSY + L++  C E I+A + KR L +AG V RM D RLP  ++ G M GG   RG        R+ E   AF +  +     W  +A+D   W+ KVE GA  F
Sbjct:  539 LQAEVVETLLYGCASWSLSVEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCKETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYDKVEDGAAWF 692          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE2.480e-2738.32hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5L6M5_9PHAE2.640e-2540.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE2.900e-2338.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCS2_9PHAE4.990e-2338.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5J5_9PHAE1.120e-2238.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZD4_9PHAE1.480e-2239.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K065_9PHAE2.830e-2238.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEU3_9PHAE3.670e-2238.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF6_9PHAE6.660e-2238.22Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L618_9PHAE1.340e-2139.49MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115069contigH-elongata_contig115069:1632..2087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score71.2
Seed ortholog evalue4.3e-10
Seed eggNOG ortholog13735.ENSPSIP00000000205
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48HSD@7711,49FJM@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.732109-CDS-H-elongata_contig115069:1631..20631622929666.732109-CDS-H-elongata_contig115069:1631..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115069 1632..2063 -
1691679111.9246426-CDS-H-elongata_contig115069:1631..20631691679111.9246426-CDS-H-elongata_contig115069:1631..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115069 1632..2063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.745523-UTR-H-elongata_contig115069:2063..20871622929666.745523-UTR-H-elongata_contig115069:2063..2087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115069 2064..2087 -
1691679111.9364216-UTR-H-elongata_contig115069:2063..20871691679111.9364216-UTR-H-elongata_contig115069:2063..2087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115069 2064..2087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115069.1201.1prot_H-elongata_contig115069.1201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115069 1632..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115069.1201.1

>prot_H-elongata_contig115069.1201.1 ID=prot_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEV
LLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQ
PAKRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF
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mRNA from alignment at H-elongata_contig115069:1632..2087-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115069.1201.1 ID=mRNA_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig115069:1632..2087- (Himanthalia elongata Himel1 dioecious)
CTGAAGGCGGAAGTACTCGAGGTCATGCTCTATGGCTGTGTGACCTGGAC TCTTTCACCCGGCGACTTCGACAAGCTGCGGGAAGCCCACCGCGGAATGC TGCTGAGGTGCCTTAATGCCTACACCTCGACGCGGGCCGCCCCTGACTAC CACATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCAT TCAGGCTGCTATGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCGCGC GCATGCACGACGATCGTCTTCCCAACATCATCATGCGTGGCGAAATGGTC GGAGGGAAGAGAAAACGGGGTCAGCCTGCGAAACGCCTTGAACACCGCGT CACGGAATATTGCACTGCCTTCGGGATCAACCCCAAGTGTTGGATGCGGG CCGCCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGGCGGGAGCTGAA GTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig115069:1632..2087-

>mRNA_H-elongata_contig115069.1201.1 ID=mRNA_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig115069:1632..2087- (Himanthalia elongata Himel1 dioecious)
ATGCTCTATGGCTGTGTGACCTGGACTCTTTCACCCGGCGACTTCGACAA
GCTGCGGGAAGCCCACCGCGGAATGCTGCTGAGGTGCCTTAATGCCTACA
CCTCGACGCGGGCCGCCCCTGACTACCACATGCTCTCATACCTCGAGGTC
CTCCTCAGGACTGACTGTGAGTGCATTCAGGCTGCTATGATGAAGCGCAT
CCTCCACTACGCCGGCCGCGTCGCGCGCATGCACGACGATCGTCTTCCCA
ACATCATCATGCGTGGCGAAATGGTCGGAGGGAAGAGAAAACGGGGTCAG
CCTGCGAAACGCCTTGAACACCGCGTCACGGAATATTGCACTGCCTTCGG
GATCAACCCCAAGTGTTGGATGCGGGCCGCCCAAGATGCACCTGAGTGGC
ACCGTAAAGTAGAGGCGGGAGCTGAAGTCTTCATGCTCTATGGCTGTGTG
ACCTGGACTCTTTCACCCGGCGACTTCGACAAGCTGCGGGAAGCCCACCG
CGGAATGCTGCTGAGGTGCCTTAATGCCTACACCTCGACGCGGGCCGCCC
CTGACTACCACATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGT
GAGTGCATTCAGGCTGCTATGATGAAGCGCATCCTCCACTACGCCGGCCG
CGTCGCGCGCATGCACGACGATCGTCTTCCCAACATCATCATGCGTGGCG
AAATGGTCGGAGGGAAGAGAAAACGGGGTCAGCCTGCGAAACGCCTTGAA
CACCGCGTCACGGAATATTGCACTGCCTTCGGGATCAACCCCAAGTGTTG
GATGCGGGCCGCCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGGCGG
GAGCTGAAGTCTTC
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