prot_H-elongata_contig115063.1200.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115063.1200.1
Unique Nameprot_H-elongata_contig115063.1200.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.760e-41
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 0
Query:    3 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 71
            DEDHTLGNALRHVLMQNK+VDFCGYSVPHPSEPKMNLRLQTTGRPALE+LKEGLRDLR LC+ILEERVE
Sbjct:   32 DEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVE 100          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.510e-30
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 0
Query:    3 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRSLCDILEERVE 71
            DEDHTLGNALRHVLMQ  + DFCGYSVPHPSEPKMNLRLQT  G PA++VLK GL+DL ++CDIL+E+++
Sbjct:   32 DEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN)

HSP 1 Score: 109 bits (273), Expect = 4.690e-30
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    2 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 71
            RDEDHTLGNALRHVLM+ +D DF GYSVPHPSEP MN+RLQTTGRPAL V+ +GL  L S+CD L  ++E
Sbjct:    5 RDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSLTGQLE 74          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S3JWW1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWW1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.230e-29
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 0
Query:    2 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCD 64
            RDEDHTLGN+LRHVLM NKD +FCGYSVPHPSE  +N+RLQTTG+PA EV++EGL DL ++CD
Sbjct:   23 RDEDHTLGNSLRHVLMNNKDTEFCGYSVPHPSESLVNIRLQTTGKPADEVMEEGLTDLANICD 85          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 106 bits (265), Expect = 3.630e-28
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0
Query:    4 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDIL 66
            EDHTLGNALRHVLMQ K+ DFCGYSVPHP+EPKMN+RLQT G  AL VL+ GL DL  +CD+L
Sbjct:   60 EDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.020e-27
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    3 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGR--PALEVLKEGLRDLRSLCDILEE 68
            DE HTLGNALRHVLM+ K+  FCGYS+PHPSEPKMN+RLQTT +  PA+++LK GL+DL  +CD+++E
Sbjct:   35 DEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.320e-26
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 0
Query:    4 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRP--ALEVLKEGLRDLRSLCDILEE 68
            EDHTLGNALRHVLMQ ++  FCGYS+PHPSEPKMNLRLQT  +   A+++LK GL+DL  +CD+++E
Sbjct:   36 EDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDE 102          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: UPI001EB0A69E (DNA-directed RNA polymerases I and III subunit RPAC2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0A69E)

HSP 1 Score: 101 bits (251), Expect = 3.790e-26
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 71
            + +EDHTLGN+LR++LM++ DV FCGYS+PHPSE K+N R+QT G+PA EVLK+GL DL+ LC  +++  E
Sbjct:   29 MHNEDHTLGNSLRYILMKSADVQFCGYSIPHPSETKINFRIQTNGKPATEVLKKGLEDLKKLCQHVQKTFE 99          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: C3YRU6_BRAFL (DNA-directed RNA polymerases I and III subunit RPAC2 (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YRU6_BRAFL)

HSP 1 Score: 100 bits (250), Expect = 4.170e-26
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 71
            L DEDHTLGNALR+++M+N DVDFCGYSVPHPSE K+NLR+Q+ G PA ++L+ GL +L +LC+ ++   E
Sbjct:   15 LHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSRGPPAADILRRGLTELNALCEHVQNTFE 85          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.680e-26
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 0
Query:    3 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTG-RPALEVLKEGLRDLRSLCDILE 67
            DEDHTLGN+LRHVLM  K+  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++  +CD+ +
Sbjct:   32 DEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFD 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI1.760e-4194.20RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.510e-3074.29RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
F0YN30_AURAN4.690e-3071.43RNA_pol_L_2 domain-containing protein (Fragment) n... [more]
A0A7S3JWW1_9STRA2.230e-2974.60Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4DHT9_HETAK3.630e-2874.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U1D2_9STRA4.020e-2766.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TTH9_9STRA2.320e-2665.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI001EB0A69E3.790e-2659.15DNA-directed RNA polymerases I and III subunit RPA... [more]
C3YRU6_BRAFL4.170e-2660.56DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A4D9D350_9STRA5.680e-2666.67RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 49..69
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 1..68
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..68
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..71
e-value: 1.7E-31
score: 109.7
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 1..70
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 2..69
e-value: 4.0E-31
score: 106.6
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115063contigH-elongata_contig115063:1149..1799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115063.1200.1mRNA_H-elongata_contig115063.1200.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115063 1149..1799 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115063.1200.1 ID=prot_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALE
VLKEGLRDLRSLCDILEERVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS