mRNA_H-elongata_contig115063.1200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115063.1200.1
Unique NamemRNA_H-elongata_contig115063.1200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.760e-41
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
            DEDHTLGNALRHVLMQNK+VDFCGYSVPHPSEPKMNLRLQTTGRPALE+LKEGLRDLR LC+ILEERVE
Sbjct:   32 DEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVE 100          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.510e-30
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRSLCDILEERVE 213
            DEDHTLGNALRHVLMQ  + DFCGYSVPHPSEPKMNLRLQT  G PA++VLK GL+DL ++CDIL+E+++
Sbjct:   32 DEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN)

HSP 1 Score: 109 bits (273), Expect = 4.690e-30
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
            RDEDHTLGNALRHVLM+ +D DF GYSVPHPSEP MN+RLQTTGRPAL V+ +GL  L S+CD L  ++E
Sbjct:    5 RDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSLTGQLE 74          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S3JWW1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWW1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.230e-29
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    4 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCD 192
            RDEDHTLGN+LRHVLM NKD +FCGYSVPHPSE  +N+RLQTTG+PA EV++EGL DL ++CD
Sbjct:   23 RDEDHTLGNSLRHVLMNNKDTEFCGYSVPHPSESLVNIRLQTTGKPADEVMEEGLTDLANICD 85          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 106 bits (265), Expect = 3.630e-28
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   10 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDIL 198
            EDHTLGNALRHVLMQ K+ DFCGYSVPHP+EPKMN+RLQT G  AL VL+ GL DL  +CD+L
Sbjct:   60 EDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.020e-27
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGR--PALEVLKEGLRDLRSLCDILEE 204
            DE HTLGNALRHVLM+ K+  FCGYS+PHPSEPKMN+RLQTT +  PA+++LK GL+DL  +CD+++E
Sbjct:   35 DEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.320e-26
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   10 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRP--ALEVLKEGLRDLRSLCDILEE 204
            EDHTLGNALRHVLMQ ++  FCGYS+PHPSEPKMNLRLQT  +   A+++LK GL+DL  +CD+++E
Sbjct:   36 EDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDE 102          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: UPI001EB0A69E (DNA-directed RNA polymerases I and III subunit RPAC2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0A69E)

HSP 1 Score: 101 bits (251), Expect = 3.790e-26
Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
            + +EDHTLGN+LR++LM++ DV FCGYS+PHPSE K+N R+QT G+PA EVLK+GL DL+ LC  +++  E
Sbjct:   29 MHNEDHTLGNSLRYILMKSADVQFCGYSIPHPSETKINFRIQTNGKPATEVLKKGLEDLKKLCQHVQKTFE 99          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: C3YRU6_BRAFL (DNA-directed RNA polymerases I and III subunit RPAC2 (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YRU6_BRAFL)

HSP 1 Score: 100 bits (250), Expect = 4.170e-26
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
            L DEDHTLGNALR+++M+N DVDFCGYSVPHPSE K+NLR+Q+ G PA ++L+ GL +L +LC+ ++   E
Sbjct:   15 LHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSRGPPAADILRRGLTELNALCEHVQNTFE 85          
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.680e-26
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTG-RPALEVLKEGLRDLRSLCDILE 201
            DEDHTLGN+LRHVLM  K+  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++  +CD+ +
Sbjct:   32 DEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFD 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI1.760e-4194.20RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.510e-3074.29RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
F0YN30_AURAN4.690e-3071.43RNA_pol_L_2 domain-containing protein (Fragment) n... [more]
A0A7S3JWW1_9STRA2.230e-2974.60Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4DHT9_HETAK3.630e-2874.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U1D2_9STRA4.020e-2766.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TTH9_9STRA2.320e-2665.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI001EB0A69E3.790e-2659.15DNA-directed RNA polymerases I and III subunit RPA... [more]
C3YRU6_BRAFL4.170e-2660.56DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A4D9D350_9STRA5.680e-2666.67RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115063contigH-elongata_contig115063:1149..1799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue4.9e-31
Seed eggNOG ortholog2880.D7FJZ6
Preferred namePOLR1D
KEGG rclassRC02795
KEGG koko:K03020,ko:K03027
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181,M00182
GOsGO:0000428,GO:0001501,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0022613,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042797,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048701,GO:0048703,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048856,GO:0051216,GO:0055029,GO:0061448,GO:0061695,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1904888,GO:1990234
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsCOG1761@1,KOG3438@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase, RBP11-like dimerisation domain
Ec32 orthologEc-18_003060.1
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.6800082-CDS-H-elongata_contig115063:1148..12281622929666.6800082-CDS-H-elongata_contig115063:1148..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115063 1149..1228 -
1691679111.8925135-CDS-H-elongata_contig115063:1148..12281691679111.8925135-CDS-H-elongata_contig115063:1148..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115063 1149..1228 -
1622929666.6921527-CDS-H-elongata_contig115063:1666..17991622929666.6921527-CDS-H-elongata_contig115063:1666..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115063 1667..1799 -
1691679111.9080768-CDS-H-elongata_contig115063:1666..17991691679111.9080768-CDS-H-elongata_contig115063:1666..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115063 1667..1799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115063.1200.1prot_H-elongata_contig115063.1200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115063 1149..1799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115063.1200.1

>prot_H-elongata_contig115063.1200.1 ID=prot_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALE
VLKEGLRDLRSLCDILEERVE
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mRNA from alignment at H-elongata_contig115063:1149..1799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115063.1200.1 ID=mRNA_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig115063:1149..1799- (Himanthalia elongata Himel1 dioecious)
CTCAGGGATGAAGATCACACCTTAGGGAACGCGTTGCGACACGTCCTGAT GCAAAACAAGGACGTCGATTTCTGCGGCTACAGTGTGCCGCACCCCTCCG AGCCGAAGATGAACTTGAGACTTCAAACTACGGGTGAGTAGCTTCACAAC CTCCCCCCCCGACAGACAGACTGACAGGTTCTTCTTACGAGCTCTATTCA TTCGCCACACACACATACACACACACGCCAGTATCAAAACAGAAACTCGC GAGATATTGCCAAGGAAGATATCTTCTTGGCGAATAATAGTCTCTGGCTT GTTGTACACTTTCGCCTTCCCGCGGGTCGCGTCTCTCCCACACGCGAAGG AAACCTTGGGTCTATAGAGATAAGGTTGCTGGTCATGCGCGACCTGGATA AAGACGCACGAGACGCGCTTCGAGAGGTACCTACGGCACATCTGCATCGC AAGCCTGTGACGCTCCCGTGTCAAGCAAGTTTACAACGTACTGGATAGTG CCATTGAATCGTGTGACGATGTTTGGTAAATTTCCGCGCAGCAATCCCAC CTCAATGACTCGTCCCGCCAGGTCGGCCTGCGCTTGAGGTCCTGAAGGAA GGGTTGAGAGATCTGCGAAGCCTGTGTGACATTTTGGAGGAGCGGGTAGA A
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Coding sequence (CDS) from alignment at H-elongata_contig115063:1149..1799-

>mRNA_H-elongata_contig115063.1200.1 ID=mRNA_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig115063:1149..1799- (Himanthalia elongata Himel1 dioecious)
CTCAGGGATGAAGATCACACCTTAGGGAACGCGTTGCGACACGTCCTGAT
GCAAAACAAGGACGTCGATTTCTGCGGCTACAGTGTGCCGCACCCCTCCG
AGCCGAAGATGAACTTGAGACTTCAAACTACGGCTCAGGGATGAAGATCA
CACCTTAGGGAACGCGTTGCGACACGTCCTGATGCAAAACAAGGACGTCG
ATTTCTGCGGCTACAGTGTGCCGCACCCCTCCGAGCCGAAGATGAACTTG
AGACTTCAAACTACGGGTCGGCCTGCGCTTGAGGTCCTGAAGGAAGGGTT
GAGAGATCTGCGAAGCCTGTGTGACATTTTGGAGGAGCGGGTAGAAGTCG
GCCTGCGCTTGAGGTCCTGAAGGAAGGGTTGAGAGATCTGCGAAGCCTGT
GTGACATTTTGGAGGAGCGGGTAGAA
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