mRNA_H-elongata_contig115034.1199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115034.1199.1
Unique NamemRNA_H-elongata_contig115034.1199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A453MY03_AEGTS (Histone H4 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MY03_AEGTS)

HSP 1 Score: 205 bits (521), Expect = 4.840e-66
Identity = 110/129 (85.27%), Postives = 116/129 (89.92%), Query Frame = 1 
Query:   10 TTPHQPHPATFQSSSSELHLDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            T P Q HP   QS+ S+L   +  + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 TVPLQIHP--IQSARSQLQGRRKPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 129
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 203 bits (517), Expect = 1.060e-65
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:   73 KHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            +H+ NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 QHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.220e-65
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:   70 DKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            +K  +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   17 NKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A2K2DI93_BRADI (Histone H4 (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DI93_BRADI)

HSP 1 Score: 203 bits (516), Expect = 3.630e-65
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:   58 ELHLDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            EL L    + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 ELSLTHRASEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 137
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: UPI001600ADDD (histone H4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600ADDD)

HSP 1 Score: 202 bits (514), Expect = 6.220e-65
Identity = 106/127 (83.46%), Postives = 109/127 (85.83%), Query Frame = 1 
Query:   16 PHQPHPATFQSSSSELHLDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            P   HP     S    H    +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 PRSVHPFKLSQSPVRPHSSTQLIKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132
[Close]
BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A6P6HBW6_PUMCO (Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A6P6HBW6_PUMCO)

HSP 1 Score: 201 bits (511), Expect = 8.750e-65
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:   67 LDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            +++  A+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MNRKTASMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
[Close]
BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: W5PHH3_SHEEP (Histone H4 n=4 Tax=Pecora TaxID=35500 RepID=W5PHH3_SHEEP)

HSP 1 Score: 201 bits (510), Expect = 1.090e-64
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:   79 VANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            VA+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 VADMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
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BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A8B8CHU8_CRAVI (Histone H4 n=4 Tax=Bilateria TaxID=33213 RepID=A0A8B8CHU8_CRAVI)

HSP 1 Score: 204 bits (520), Expect = 1.120e-64
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 1 
Query:   61 LHLDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            L  D ++ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  104 LFEDTNLANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 215
[Close]
BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A2P5DRN5_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5DRN5_PARAD)

HSP 1 Score: 201 bits (511), Expect = 1.520e-64
Identity = 104/119 (87.39%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:   40 FQSSSSELHLDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            F+    E   +   A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 FEKKKGERKENSRRAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127
[Close]
BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Match: A0A1G4M1Q1_ANAPH (Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phagocytophilum TaxID=948 RepID=A0A1G4M1Q1_ANAPH)

HSP 1 Score: 201 bits (512), Expect = 1.580e-64
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1 
Query:   67 LDKHVANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            L    ANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 LPVFAANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115034.1199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453MY03_AEGTS4.840e-6685.27Histone H4 n=1 Tax=Aegilops tauschii subsp. strang... [more]
W5QFN7_SHEEP1.060e-6595.37Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q... [more]
A0A3L6V663_9STRA1.220e-6596.33Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A2K2DI93_BRADI3.630e-6592.04Histone H4 (Fragment) n=1 Tax=Brachypodium distach... [more]
UPI001600ADDD6.220e-6583.46histone H4-like n=1 Tax=Branchiostoma floridae Tax... [more]
A0A6P6HBW6_PUMCO8.750e-6592.73Histone H4 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
W5PHH3_SHEEP1.090e-6497.17Histone H4 n=4 Tax=Pecora TaxID=35500 RepID=W5PHH3... [more]
A0A8B8CHU8_CRAVI1.120e-6493.75Histone H4 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A2P5DRN5_PARAD1.520e-6487.39Histone H4 (Fragment) n=1 Tax=Parasponia andersoni... [more]
A0A1G4M1Q1_ANAPH1.580e-6494.55Core histone H2A/H2B/H3/H4 n=1 Tax=Anaplasma phago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115034contigH-elongata_contig115034:1637..2035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score206.5
Seed ortholog evalue7.9e-51
Seed eggNOG ortholog38727.Pavir.Ia04562.1.p
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs37ZQ9@33090,3GPFG@35493,3II7E@38820,3KZS7@4447,COG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.6412299-CDS-H-elongata_contig115034:1636..20351622929666.6412299-CDS-H-elongata_contig115034:1636..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115034 1637..2035 -
1691679111.878325-CDS-H-elongata_contig115034:1636..20351691679111.878325-CDS-H-elongata_contig115034:1636..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115034 1637..2035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115034.1199.1prot_H-elongata_contig115034.1199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115034 1637..2035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115034.1199.1

>prot_H-elongata_contig115034.1199.1 ID=prot_H-elongata_contig115034.1199.1|Name=mRNA_H-elongata_contig115034.1199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
TTPTTPHQPHPATFQSSSSELHLDKHVANMSGRGKGGKGLGKGGAKRHRK
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSV
TYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at H-elongata_contig115034:1637..2035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115034.1199.1 ID=mRNA_H-elongata_contig115034.1199.1|Name=mRNA_H-elongata_contig115034.1199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig115034:1637..2035- (Himanthalia elongata Himel1 dioecious)
ACCACTCCGACCACTCCGCATCAACCACACCCCGCAACATTCCAATCATC
ATCTTCTGAACTTCATTTAGACAAGCACGTAGCAAACATGTCAGGACGCG
GAAAGGGAGGCAAAGGTCTAGGCAAGGGTGGGGCTAAGCGCCACCGCAAA
GTTCTTCGTGATAATATCCAGGGTATCACAAAGCCCGCGATCCGCCGTCT
GGCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGA
CCCGCGGAGTACTCAAGGTGTTCTTGGAGAACGTAATCCGCGACTCGGTG
ACGTACACAGAGCACGCCCGTCGCAAGACCGTTACGGCCATGGATGTGGT
TTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGTTTTGGTGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig115034:1637..2035-

>mRNA_H-elongata_contig115034.1199.1 ID=mRNA_H-elongata_contig115034.1199.1|Name=mRNA_H-elongata_contig115034.1199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig115034:1637..2035- (Himanthalia elongata Himel1 dioecious)
ACCACTCCGACCACTCCGCATCAACCACACCCCGCAACATTCCAATCATC
ATCTTCTGAACTTCATTTAGACAAGCACGTAGCAAACATGTCAGGACGCG
GAAAGGGAGGCAAAGGTCTAGGCAAGGGTGGGGCTAAGCGCCACCGCAAA
GTTCTTCGTGATAATATCCAGGGTATCACAAAGCCCGCGATCCGCCGTCT
GGCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGA
CCCGCGGAGTACTCAAGGTGTTCTTGGAGAACGTAATCCGCGACTCGGTG
ACGTACACAGAGCACGCCCGTCGCAAGACCGTTACGGCCATGGATGTGGT
TTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGTTTTGGTGGCTAAA
CCACTCCGACCACTCCGCATCAACCACACCCCGCAACATTCCAATCATCA
TCTTCTGAACTTCATTTAGACAAGCACGTAGCAAACATGTCAGGACGCGG
AAAGGGAGGCAAAGGTCTAGGCAAGGGTGGGGCTAAGCGCCACCGCAAAG
TTCTTCGTGATAATATCCAGGGTATCACAAAGCCCGCGATCCGCCGTCTG
GCTCGCCGTGGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC
CCGCGGAGTACTCAAGGTGTTCTTGGAGAACGTAATCCGCGACTCGGTGA
CGTACACAGAGCACGCCCGTCGCAAGACCGTTACGGCCATGGATGTGGTT
TACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGTTTTGGTGGCTAA
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