mRNA_H-elongata_contig48333.11982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48333.11982.1
Unique NamemRNA_H-elongata_contig48333.11982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.990e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 KFFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            KFFHCYLLQSQDP+H RSTYIGFTVDP RRIRQH
Sbjct:    9 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQH 42
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A7S1YNL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNL2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.780e-9
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 KFFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            K FHCYLL+S +P HP  TYIGFT +PSRRIRQH
Sbjct:   22 KHFHCYLLRSLNPDHPLKTYIGFTTNPSRRIRQH 55
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A1J7GC68_LUPAN (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7GC68_LUPAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.960e-9
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 FFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            FF CYLL S +PRH RSTYIGFTV+P RRIRQH
Sbjct:   58 FFACYLLTSLNPRHKRSTYIGFTVNPRRRIRQH 90
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A6A4NQ54_LUPAL (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NQ54_LUPAL)

HSP 1 Score: 59.3 bits (142), Expect = 2.970e-9
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 FFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            FF CYLL S +PRH RSTYIGFTV+P RRIRQH
Sbjct:   85 FFACYLLTSLNPRHKRSTYIGFTVNPRRRIRQH 117
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A7S0C8U8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8U8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.930e-9
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   10 HCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            HCYLL+S  P+HPR+TY+G+T DP RR+RQH
Sbjct:   48 HCYLLRSTSPKHPRTTYVGYTCDPKRRLRQH 78
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: K0SR11_THAOC (GIY-YIG domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SR11_THAOC)

HSP 1 Score: 58.2 bits (139), Expect = 7.560e-9
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 KFFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            K +HCYLL+S DP HP  TYIGFT +P RR+RQH
Sbjct:  184 KHYHCYLLRSLDPGHPLKTYIGFTTNPERRLRQH 217
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: UPI00098DF1E5 (structure-specific endonuclease subunit SLX1 homolog 2-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DF1E5)

HSP 1 Score: 57.4 bits (137), Expect = 1.410e-8
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 FFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            FF CYLL SQ PRH   TYIGFTV+P RRIRQH
Sbjct:   57 FFACYLLSSQSPRHKGRTYIGFTVNPRRRIRQH 89
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: UPI001C35EDEC (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C35EDEC)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-8
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 KFFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            +FF CYLL S  PRH   TYIGFTV+P RRIRQH
Sbjct:   35 RFFACYLLVSLSPRHKGHTYIGFTVNPRRRIRQH 68
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BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A8J2SCH5_9STRA (Structure-specific endonuclease subunit SLX1 homolog n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCH5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-8
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 FFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            F  CYLL+S DP HPRS+YIGFTV+P RR+RQH
Sbjct:   30 FCGCYLLRSCDPAHPRSSYIGFTVNPLRRVRQH 62
[Close]
BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Match: A0A1J7IIT6_LUPAN (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7IIT6_LUPAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.930e-8
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    4 FFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQH 102
            FF CYLL S +P H RSTYIGFTV+P RRIRQH
Sbjct:   47 FFACYLLTSLNPSHKRSTYIGFTVNPRRRIRQH 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48333.11982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI2.990e-1491.18Endo/excinuclease amino terminal domain-containing... [more]
A0A7S1YNL2_9STRA1.780e-973.53Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1J7GC68_LUPAN2.960e-978.79Structure-specific endonuclease subunit SLX1 homol... [more]
A0A6A4NQ54_LUPAL2.970e-978.79Structure-specific endonuclease subunit SLX1 homol... [more]
A0A7S0C8U8_9STRA5.930e-967.74Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K0SR11_THAOC7.560e-967.65GIY-YIG domain-containing protein n=1 Tax=Thalassi... [more]
UPI00098DF1E51.410e-875.76structure-specific endonuclease subunit SLX1 homol... [more]
UPI001C35EDEC1.730e-870.59Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A8J2SCH5_9STRA1.870e-872.73Structure-specific endonuclease subunit SLX1 homol... [more]
A0A1J7IIT6_LUPAN1.930e-875.76Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48333contigH-elongata_contig48333:451..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog2880.D8LKZ6
KEGG koko:K15078
KEGG Pathwayko03460,map03460
GOsGO:0000228,GO:0000723,GO:0001325,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008821,GO:0009893,GO:0009987,GO:0010604,GO:0010638,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032991,GO:0033043,GO:0033044,GO:0033557,GO:0034641,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045935,GO:0046483,GO:0048256,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090737,GO:0140097,GO:1901360,GO:1904429,GO:1904431,GO:2001252
EggNOG free text desc.5'-flap endonuclease activity
EggNOG OGsKOG3005@1,KOG3005@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.3768427-CDS-H-elongata_contig48333:450..5581622930796.3768427-CDS-H-elongata_contig48333:450..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48333 451..558 +
1691679574.050364-CDS-H-elongata_contig48333:450..5581691679574.050364-CDS-H-elongata_contig48333:450..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48333 451..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48333.11982.1prot_H-elongata_contig48333.11982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48333 451..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48333.11982.1

>prot_H-elongata_contig48333.11982.1 ID=prot_H-elongata_contig48333.11982.1|Name=mRNA_H-elongata_contig48333.11982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
KFFHCYLLQSQDPRHPRSTYIGFTVDPSRRIRQHK*
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mRNA from alignment at H-elongata_contig48333:451..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48333.11982.1 ID=mRNA_H-elongata_contig48333.11982.1|Name=mRNA_H-elongata_contig48333.11982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig48333:451..558+ (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCCATTGCTATCTGCTGCAGTCCCAGGACCCCAGGCATCCACG
CTCGACGTACATTGGCTTCACCGTGGACCCGAGCAGACGGATTCGTCAGC
ACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48333:451..558+

>mRNA_H-elongata_contig48333.11982.1 ID=mRNA_H-elongata_contig48333.11982.1|Name=mRNA_H-elongata_contig48333.11982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig48333:451..558+ (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCCATTGCTATCTGCTGCAGTCCCAGGACCCCAGGCATCCACG
CTCGACGTACATTGGCTTCACCGTGGACCCGAGCAGACGGATTCGTCAGC
ACAAGTGAAAGTTCTTCCATTGCTATCTGCTGCAGTCCCAGGACCCCAGG
CATCCACGCTCGACGTACATTGGCTTCACCGTGGACCCGAGCAGACGGAT
TCGTCAGCACAAGTGA
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