mRNA_H-elongata_contig48127.11954.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48127.11954.1
Unique NamemRNA_H-elongata_contig48127.11954.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48127.11954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48127contigH-elongata_contig48127:2005..3750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1193
Cds size852
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48127.11954.1prot_H-elongata_contig48127.11954.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48127 2345..3750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.738156-UTR-H-elongata_contig48127:2004..23441622930793.738156-UTR-H-elongata_contig48127:2004..2344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48127 2005..2344 -
1691679572.9806473-UTR-H-elongata_contig48127:2004..23441691679572.9806473-UTR-H-elongata_contig48127:2004..2344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48127 2005..2344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.7609165-CDS-H-elongata_contig48127:2344..28461622930793.7609165-CDS-H-elongata_contig48127:2344..2846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 2345..2846 -
1691679572.9903812-CDS-H-elongata_contig48127:2344..28461691679572.9903812-CDS-H-elongata_contig48127:2344..2846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 2345..2846 -
1622930793.7770498-CDS-H-elongata_contig48127:3066..31501622930793.7770498-CDS-H-elongata_contig48127:3066..3150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 3067..3150 -
1691679572.9996817-CDS-H-elongata_contig48127:3066..31501691679572.9996817-CDS-H-elongata_contig48127:3066..3150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 3067..3150 -
1622930793.7898104-CDS-H-elongata_contig48127:3484..37501622930793.7898104-CDS-H-elongata_contig48127:3484..3750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 3485..3750 -
1691679573.009614-CDS-H-elongata_contig48127:3484..37501691679573.009614-CDS-H-elongata_contig48127:3484..3750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48127 3485..3750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48127.11954.1

>prot_H-elongata_contig48127.11954.1 ID=prot_H-elongata_contig48127.11954.1|Name=mRNA_H-elongata_contig48127.11954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
GGGSSPKFDLSSPASPVPPPCEHPILTDTTVSESETDGGIAAALRNPSVD
ADDESAPPVEELIKRAAKSDSTIPGSPVEEAVPQSSCKRSRETTTENSSG
GRSLSLATLELCSYPSKREAVPGRYWQPERIVMVVTTSAVESCAIALRGK
HVLTPVEKTSIWKRALTMTPRSMKRWRKGASVKESAQKRRYPTSTSPSRK
AVERTRNLAIRPARLEEKWLTRDLAREGAEDRGRLVLSRTQPARNQTPGV
FLAGHSSKAVLAGLARPSWKSLSKDLARRVTAL*
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mRNA from alignment at H-elongata_contig48127:2005..3750-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48127.11954.1 ID=mRNA_H-elongata_contig48127.11954.1|Name=mRNA_H-elongata_contig48127.11954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1746bp|location=Sequence derived from alignment at H-elongata_contig48127:2005..3750- (Himanthalia elongata Himel1 dioecious)
GGTGGGGGAAGCTCGCCGAAATTTGATCTATCCTCCCCCGCTTCACCCGT
GCCGCCGCCCTGTGAGCATCCCATCTTGACGGACACCACCGTCAGCGAGT
CTGAAACGGATGGTGGCATCGCCGCTGCCTTAAGGAACCCTTCGGTCGAC
GCTGACGACGAGAGCGCACCGCCGGTGGAAGAGCTGATAAAGCGTGCGGC
TAAGTCGGATTCGACGATCCCCGGATCGCCGGTGGAAGAGGCGGTCCCGC
AAAGTTCCTGCAAACGGTACGTCGCAGGCACGGAGCCGTTCTCCAGTGAG
CAGAGAGAGTCCCTATCTTTCGTGCTGTAGTTTTTCCTCGTTCTTTCTAT
GTAGGAACGTTGGCCATCTACCGTGTGGGTAGATATTCTAGAGGCGTGTG
CCCACGCGAAACATGTGTAGCCCACGCAGAGATCTGTGCAAAAATACGCA
AAACATTCATCCTTTTTTTGCGCACGGTGACTCCATGATAACCGGGTTAC
AAATAGCCAGTTCAGTAGTGATCGTTTCTTTCCTCGCCACTTCACCCTCC
ACTGGTCATTGCGTGCCCTTGCATCTTCTCCCCCTCGTCCCCCCTCTCAG
TTCGCGAGAAACGACAACAGAAAATAGTTCCGGTGGCCGTAGCCTCAGTT
TGGCAACGTTGGAGTTGTGCTCTTACCCTTCAAAGCACAATACTCTAGCA
CGAAGCGGCGATGTGGCGGAATCGACGCCGAAATCTGAGGCAGGGCCGAG
CCGGGCCGCAAGCACATCTCCTGTAGTCTCTGCTACCGGCGCAGGCGGTG
AATTTACCCGGGCGGTCAGACTAGCGGCGCGTTTTAAACGAGTTACTCCC
TTATGCCAAAAATCTTCAGCCCATCAGCGCGCGGCGGTGGTGGAGCGCAG
GAAGACGCGAAGCGGTTCCTGGGCGATACTGGCAGCCGGAGAGAATAGTG
ATGGTGGTGACAACATCGGCTGTAGAAAGTTGCGCAATAGCTCTTCGAGG
AAAACACGTTCTAACACCGGTGGAAAAAACATCGATTTGGAAGAGAGCTT
TGACCATGACGCCCCGGTCGATGAAACGATGGCGGAAAGGGGCGAGCGTA
AAAGAAAGCGCGCAGAAAAGGCGCTACCCAACAAGCACGTCACCGTCTCG
GAAGGCGGTAGAGCGCACTCGGAACTTAGCGATTCGACCGGCGCGGTTGG
AGGAGAAGTGGTTGACGAGAGACCTCGCAAGAGAGGGCGCGGAAGACCGC
GGAAGGCTCGTGTTATCAAGGACACAACCTGCGCGGAACCAGACTCCCGG
TGTCTTTCTGGCAGGACATTCGTCGAAGGCAGTTCTCGCGGGGCTGGCGC
GACCGTCATGGAAATCTCTGTCGAAGGACCTAGCCCGGCGGGTGACTGCG
CTATAGAGATTTGCGACGACCAAGTATGCCCCGTGGGCGACGGCGGTGGC
CAAGCTATCGCCGTAAGCCTCGACGCTCCAGAGGTGTACGGCTGGATGCC
GCCCGCCCGCGCTCCTCGCTCGCGCTTTTTCATTGCGGGGGTGGGGGATA
TCGCCACAACTACCTCCGCGGTTGCTTACGATTTAAGACCCCTCGCGCCG
TCTGCCTCGACTTTGGAACCAACCTCGATGACGGCTGTTGGTGGCGGCGC
AAGTTGGAGAGTGAGGACGAGGTCGGCGTCGCGCCATCGTGAGAACGTGG
AGAGGGCGGGGTTCATCAGAAGTCAGTCAGGAGAGGCGGAGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig48127:2005..3750-

>mRNA_H-elongata_contig48127.11954.1 ID=mRNA_H-elongata_contig48127.11954.1|Name=mRNA_H-elongata_contig48127.11954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig48127:2005..3750- (Himanthalia elongata Himel1 dioecious)
GGTGGGGGAAGCTCGCCGAAATTTGATCTATCCTCCCCCGCTTCACCCGT
GCCGCCGCCCTGTGAGCATCCCATCTTGACGGACACCACCGTCAGCGAGT
CTGAAACGGATGGTGGCATCGCCGCTGCCTTAAGGAACCCTTCGGTCGAC
GCTGACGACGAGAGCGCACCGCCGGTGGAAGAGCTGATAAAGCGTGCGGC
TAAGTCGGATTCGACGATCCCCGGATCGCCGGTGGAAGAGGCGGTCCCGC
AAAGTTCCTGCAAACGGGTGGGGGAAGCTCGCCGAAATTTGATCTATCCT
CCCCCGCTTCACCCGTGCCGCCGCCCTGTGAGCATCCCATCTTGACGGAC
ACCACCGTCAGCGAGTCTGAAACGGATGGTGGCATCGCCGCTGCCTTAAG
GAACCCTTCGGTCGACGCTGACGACGAGAGCGCACCGCCGGTGGAAGAGC
TGATAAAGCGTGCGGCTAAGTCGGATTCGACGATCCCCGGATCGCCGGTG
GAAGAGGCGGTCCCGCAAAGTTCCTGCAAACGTTCGCGAGAAACGACAAC
AGAAAATAGTTCCGGTGGCCGTAGCCTCAGTTTGGCAACGTTGGAGTTGT
GCTCTTACCCTTCAAATTCGCGAGAAACGACAACAGAAAATAGTTCCGGT
GGCCGTAGCCTCAGTTTGGCAACGTTGGAGTTGTGCTCTTACCCTTCAAA
ACGCGAAGCGGTTCCTGGGCGATACTGGCAGCCGGAGAGAATAGTGATGG
TGGTGACAACATCGGCTGTAGAAAGTTGCGCAATAGCTCTTCGAGGAAAA
CACGTTCTAACACCGGTGGAAAAAACATCGATTTGGAAGAGAGCTTTGAC
CATGACGCCCCGGTCGATGAAACGATGGCGGAAAGGGGCGAGCGTAAAAG
AAAGCGCGCAGAAAAGGCGCTACCCAACAAGCACGTCACCGTCTCGGAAG
GCGGTAGAGCGCACTCGGAACTTAGCGATTCGACCGGCGCGGTTGGAGGA
GAAGTGGTTGACGAGAGACCTCGCAAGAGAGGGCGCGGAAGACCGCGGAA
GGCTCGTGTTATCAAGGACACAACCTGCGCGGAACCAGACTCCCGGTGTC
TTTCTGGCAGGACATTCGTCGAAGGCAGTTCTCGCGGGGCTGGCGCGACC
GTCATGGAAATCTCTGTCGAAGGACCTAGCCCGGCGGGTGACTGCGCTAT
AGACGCGAAGCGGTTCCTGGGCGATACTGGCAGCCGGAGAGAATAGTGAT
GGTGGTGACAACATCGGCTGTAGAAAGTTGCGCAATAGCTCTTCGAGGAA
AACACGTTCTAACACCGGTGGAAAAAACATCGATTTGGAAGAGAGCTTTG
ACCATGACGCCCCGGTCGATGAAACGATGGCGGAAAGGGGCGAGCGTAAA
AGAAAGCGCGCAGAAAAGGCGCTACCCAACAAGCACGTCACCGTCTCGGA
AGGCGGTAGAGCGCACTCGGAACTTAGCGATTCGACCGGCGCGGTTGGAG
GAGAAGTGGTTGACGAGAGACCTCGCAAGAGAGGGCGCGGAAGACCGCGG
AAGGCTCGTGTTATCAAGGACACAACCTGCGCGGAACCAGACTCCCGGTG
TCTTTCTGGCAGGACATTCGTCGAAGGCAGTTCTCGCGGGGCTGGCGCGA
CCGTCATGGAAATCTCTGTCGAAGGACCTAGCCCGGCGGGTGACTGCGCT
ATAG
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