prot_H-elongata_contig11492.1193.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11492.1193.1
Unique Name	prot_H-elongata_contig11492.1193.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	167

Homology

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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: D7FRK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 3.420e-84
Identity = 130/164 (79.27%), Postives = 142/164 (86.59%), Query Frame = 0

Query:    1 SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSR 164
            S  Y+RHVNDPEV AQTYEG   R+LWA ILHPFDL+ATRM+TES  +Y+T  +SV HVL+  G  GLFLGVRSSI NVLLPFG  YL+GVP LIKTRRMLDGMDTVFRAGMGGSLD+VR ILKEEG AGLFAGYRATLWGIGPAFLSLCGARLLVYV++GSSR
Sbjct:  213 SDSYSRHVNDPEVLAQTYEGFATRILWAGILHPFDLLATRMMTESRPEYATGTASVRHVLKQSGFAGLFLGVRSSILNVLLPFGNWYLLGVPFLIKTRRMLDGMDTVFRAGMGGSLDMVRAILKEEGLAGLFAGYRATLWGIGPAFLSLCGARLLVYVVLGSSR 376

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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A7S2C0Y1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0Y1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.510e-15
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 0

Query:   67 GLFLGVRSSIFNVLLPFGK--LYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSRRT 166
            GLF+GVR SI N LLP G    +++G+PSL++ RRML+   T    G+GG+++I+R ++K +G +GLFAG RA + G+ P   ++  A    +++ GS+ +T
Sbjct:   10 GLFVGVRLSILNTLLPTGSSTFFMLGIPSLLRIRRMLE--TTPAADGLGGAIEILRQVVKSDGPSGLFAGGRAVVDGLFPTAAAIWIAGTASWLVTGSTLKT 109

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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CH83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH83_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0

Query:  110 AGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSS 163
            +G+GGSLD++R I+  +G  GLFAG +A+ WG  PAF +LC ARLLVY++ GSS
Sbjct:   12 SGLGGSLDLLRDIISTQGVTGLFAGLKASCWGFVPAFGALCAARLLVYMITGSS 65

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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CAD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.610e-12
Identity = 50/150 (33.33%), Postives = 66/150 (44.00%), Query Frame = 0

Query:   10 DPEVRAQTYEGVVARML--------------------------WASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGV--------------TGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDG-MDTVFRAGMGGSLDI 118
            DPE+    YEGV+ R +                          WA  LHPFDL+ATRMITE+  +Y+TV +++                        GLF GVRSSI    LP    Y +GVP L+KTRRM    + +    G+G  L +
Sbjct:  243 DPEMAVHAYEGVLGRAVCSDRSXXXXXXXXXXXXXXXXXXXXVWAVALHPFDLLATRMITEAGARYATVRAALRTAAGSXXXXXXXXXXXAGDGHWAGLFAGVRSSIIGACLPCSSWYALGVPFLVKTRRMASASVGSDLEPGLGFGLQV 392

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FRK1_ECTSI	3.420e-84	79.27	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2C0Y1_9STRA	5.510e-15	41.18	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A836CH83_9STRA	2.030e-12	57.41	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CAD8_9STRA	6.610e-12	33.33	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain superfamily	GENE3D	1.50.40.10		coord: 92..157 e-value: 7.9E-7 score: 30.0
IPR023395	Mitochondrial carrier domain superfamily	GENE3D	1.50.40.10		coord: 3..91 e-value: 9.7E-8 score: 32.9
IPR023395	Mitochondrial carrier domain superfamily	SUPERFAMILY	103506	Mitochondrial carrier	coord: 18..145
IPR018108	Mitochondrial substrate/solute carrier	PFAM	PF00153	Mito_carr	coord: 19..79 e-value: 6.7E-7 score: 29.1 coord: 94..145 e-value: 5.9E-5 score: 22.9
IPR018108	Mitochondrial substrate/solute carrier	PROSITE	PS50920	SOLCAR	coord: 11..97 score: 11.229
None	No IPR available	PANTHER	PTHR45667	FAMILY NOT NAMED	coord: 20..79
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 137..160
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 76..95
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..75
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 161..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 96..136
None	No IPR available	TMHMM	TMhelix		coord: 69..91
None	No IPR available	TMHMM	TMhelix		coord: 137..159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11492	contig	H-elongata_contig11492:5992..8623 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11492.1193.1	mRNA_H-elongata_contig11492.1193.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11492 5992..8623 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11492.1193.1 ID=prot_H-elongata_contig11492.1193.1|Name=mRNA_H-elongata_contig11492.1193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYS
TVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRM
LDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLC
GARLLVYVLMGSSRRT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023395	Mt_carrier_dom_sf
IPR018108	Mitochondrial_sb/sol_carrier