mRNA_H-elongata_contig47997.11934.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 193 bits (490), Expect = 6.340e-58 Identity = 91/137 (66.42%), Postives = 107/137 (78.10%), Query Frame = 3
Query: 288 VLPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
++P ++ GKGK T PRK SIA E+ P NR+K G GMSFG+QE SWCD R+C LWI SW LRP NGS++ QRP LVLDDFKCH++DTFIA+L+ + NT VI IPGGLTPLLQ LDRMLNK+MKRLLRG YT Y
Sbjct: 117 LIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE) HSP 1 Score: 191 bits (485), Expect = 4.670e-56 Identity = 98/164 (59.76%), Postives = 112/164 (68.29%), Query Frame = 3
Query: 207 EGAFHSLSSCHGGWQQGSATDNLQRHAVLPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
EG H S CHGG Q+ ++ +P +GKGK T PRK +A E P NR + G A GMSFG+QE SW D R+C WIS SW+LRP NGSI+ QRP LVLDD KCH+ + FIA L+ NT VI IPGGLTPLLQ LDRMLNKQMKRLLRGKYTAY
Sbjct: 33 EGTLHVRSGCHGGRQKVLPRIIVKGTPFIPPTVSGKGKSTLPRKNYVAWENHPANRAEHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 196
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5JSP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP1_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.630e-54 Identity = 98/137 (71.53%), Postives = 104/137 (75.91%), Query Frame = 3
Query: 288 VLPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+LP E +GKGKRT RKGSI+AEVA GNRTKFG G FG QENSW DAR+C +SE WRLRP NGSII QRP LVLDD K HR+ FI DL RCNTSV LIPGGL PLLQ LDRMLNKQ KRLLR KYTAY
Sbjct: 49 ILP-EVSGKGKRTQLRKGSISAEVALGNRTKFGHRVWGTWFGAQENSWYDARECAFSMSERWRLRPNNGSIIKQRPSNLVLDDLKGHRDKAFIDDLGKRCNTSVSLIPGGLAPLLQPLDRMLNKQTKRLLRAKYTAY 184
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE) HSP 1 Score: 189 bits (479), Expect = 5.260e-53 Identity = 92/136 (67.65%), Postives = 103/136 (75.74%), Query Frame = 3
Query: 291 LPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+P GKGK T PRK SIA EV P NR+K G GMSFG+QE SWCD R+C LWI +SW+LRP NGSI+ QR LVLDDFKCH++D FIA L+ NT VI IPGGLTPLLQ LDRMLNKQMKRLLRG YTA+
Sbjct: 300 VPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 435
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE) HSP 1 Score: 187 bits (475), Expect = 5.800e-53 Identity = 96/160 (60.00%), Postives = 110/160 (68.75%), Query Frame = 3
Query: 207 EGAFHSLSSCHGGWQQG-SATDNLQRHAVLPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRG 683
EG H+ S CHGG Q+ S Q +P +GKGK T PRK S+A E+ P NR K G A GMSFG+QE SW D R+C WIS SW+LRP NGSI+ QRP LVLDDFKCH+++ FIA L+ NT VI PGGLTPLLQ LDR LNKQMKRLLRG
Sbjct: 216 EGTLHARSGCHGGRQKNVSPRIIFQGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGLTPLLQPLDRTLNKQMKRLLRG 375
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 185 bits (469), Expect = 6.560e-53 Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = 3
Query: 291 LPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+P +GKGK T PRK S+A E+ P NR K A GMSFG+QE SW D R+C WIS SW+LRP NGSI+ QRP LVLDDFKCH+++ +IA L+ NT VI+IPGGLTPLLQ LDRMLNKQMKRLLRGKYTAY
Sbjct: 180 IPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.210e-52 Identity = 92/136 (67.65%), Postives = 103/136 (75.74%), Query Frame = 3
Query: 291 LPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+P +GKGK T PRK +A E+ P NR K G A GMSFG+QE SW D R+C WIS SW+LRP NGSI+ QRPR LVLDDFKCH ++ FIA L+ NT VI IPGGLTPLLQ LDRMLNKQMKRLLRGKYTAY
Sbjct: 375 IPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE) HSP 1 Score: 177 bits (449), Expect = 2.000e-51 Identity = 86/136 (63.24%), Postives = 101/136 (74.26%), Query Frame = 3
Query: 291 LPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+P +GKGK T PRK S+A E+ P NR K A GMSFG+Q SW D R+C WIS SW+LRP NGSI+ QRP LVLDDFKCH+++ FIA L+ NT +I IPGG+T LLQ LDR+LNKQMKRLLRGKYTAY
Sbjct: 41 IPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAY 176
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.600e-51 Identity = 90/136 (66.18%), Postives = 102/136 (75.00%), Query Frame = 3
Query: 291 LPAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
+P GKGK T PRK SIA EV P NR+K G GMSFG+QE SWCD R+ LWI +SW+LRP NGS++ QR LVLDDFKCH++D FIA L+ NT VI IPGGLTPLLQ LDRMLNKQMKRLLRG YTA+
Sbjct: 293 VPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 181 bits (459), Expect = 5.580e-51 Identity = 90/135 (66.67%), Postives = 101/135 (74.81%), Query Frame = 3
Query: 294 PAEQAGKGKRT*PRKGSIAAEVAPGNRTKFGQLAAGMSFGLQENSWCDARKCTLWISESWRLRPKNGSIITQRPRTLVLDDFKCHRNDTFIADLR*RCNTSVILIPGGLTPLLQSLDRMLNKQMKRLLRGKYTAY 698
P +GKGK T PRK S+A E+ P NR K G A GMSFG+QE SW D R+C WIS SW+LRP NGSI+ QRP LVLDDFKCH+++ FIA L+ NT VI IPG LTPLLQ LDRMLNKQMKRLLR KYTAY
Sbjct: 181 PPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47997.11934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47997.11934.1 >prot_H-elongata_contig47997.11934.1 ID=prot_H-elongata_contig47997.11934.1|Name=mRNA_H-elongata_contig47997.11934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp MDQTSVQHYMPFEITLEKRGAKDARISTGREEKERFTLCLPVMADGSKVPback to top mRNA from alignment at H-elongata_contig47997:2444..3369+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47997.11934.1 ID=mRNA_H-elongata_contig47997.11934.1|Name=mRNA_H-elongata_contig47997.11934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=926bp|location=Sequence derived from alignment at H-elongata_contig47997:2444..3369+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47997:2444..3369+ >mRNA_H-elongata_contig47997.11934.1 ID=mRNA_H-elongata_contig47997.11934.1|Name=mRNA_H-elongata_contig47997.11934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig47997:2444..3369+ (Himanthalia elongata Himel1 dioecious)back to top |