mRNA_H-elongata_contig11492.1193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11492.1193.1
Unique NamemRNA_H-elongata_contig11492.1193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: D7FRK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 3.420e-84
Identity = 130/164 (79.27%), Postives = 142/164 (86.59%), Query Frame = 1 
Query:    1 SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSR 492
            S  Y+RHVNDPEV AQTYEG   R+LWA ILHPFDL+ATRM+TES  +Y+T  +SV HVL+  G  GLFLGVRSSI NVLLPFG  YL+GVP LIKTRRMLDGMDTVFRAGMGGSLD+VR ILKEEG AGLFAGYRATLWGIGPAFLSLCGARLLVYV++GSSR
Sbjct:  213 SDSYSRHVNDPEVLAQTYEGFATRILWAGILHPFDLLATRMMTESRPEYATGTASVRHVLKQSGFAGLFLGVRSSILNVLLPFGNWYLLGVPFLIKTRRMLDGMDTVFRAGMGGSLDMVRAILKEEGLAGLFAGYRATLWGIGPAFLSLCGARLLVYVVLGSSR 376
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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A7S2C0Y1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0Y1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.510e-15
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:  199 GLFLGVRSSIFNVLLPFGK--LYLMGVPSLIKTRRMLDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSSRRT 498
            GLF+GVR SI N LLP G    +++G+PSL++ RRML+   T    G+GG+++I+R ++K +G +GLFAG RA + G+ P   ++  A    +++ GS+ +T
Sbjct:   10 GLFVGVRLSILNTLLPTGSSTFFMLGIPSLLRIRRMLE--TTPAADGLGGAIEILRQVVKSDGPSGLFAGGRAVVDGLFPTAAAIWIAGTASWLVTGSTLKT 109
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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CH83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH83_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  328 AGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLCGARLLVYVLMGSS 489
            +G+GGSLD++R I+  +G  GLFAG +A+ WG  PAF +LC ARLLVY++ GSS
Sbjct:   12 SGLGGSLDLLRDIISTQGVTGLFAGLKASCWGFVPAFGALCAARLLVYMITGSS 65
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BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Match: A0A836CAD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.610e-12
Identity = 50/150 (33.33%), Postives = 66/150 (44.00%), Query Frame = 1 
Query:   28 DPEVRAQTYEGVVARML--------------------------WASILHPFDLIATRMITESSTQYSTVASSVSHVLEHRGV--------------TGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRMLDG-MDTVFRAGMGGSLDI 354
            DPE+    YEGV+ R +                          WA  LHPFDL+ATRMITE+  +Y+TV +++                        GLF GVRSSI    LP    Y +GVP L+KTRRM    + +    G+G  L +
Sbjct:  243 DPEMAVHAYEGVLGRAVCSDRSXXXXXXXXXXXXXXXXXXXXVWAVALHPFDLLATRMITEAGARYATVRAALRTAAGSXXXXXXXXXXXAGDGHWAGLFAGVRSSIIGACLPCSSWYALGVPFLVKTRRMASASVGSDLEPGLGFGLQV 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11492.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRK1_ECTSI3.420e-8479.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2C0Y1_9STRA5.510e-1541.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CH83_9STRA2.030e-1257.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAD8_9STRA6.610e-1233.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11492contigH-elongata_contig11492:5992..8623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-09_000240.1
Exons6
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11492.1193.1prot_H-elongata_contig11492.1193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11492 5992..8623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.4435256-CDS-H-elongata_contig11492:5991..60721622929665.4435256-CDS-H-elongata_contig11492:5991..6072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 5992..6072 +
1691679111.240313-CDS-H-elongata_contig11492:5991..60721691679111.240313-CDS-H-elongata_contig11492:5991..6072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 5992..6072 +
1622929665.4630048-CDS-H-elongata_contig11492:6413..64761622929665.4630048-CDS-H-elongata_contig11492:6413..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 6414..6476 +
1691679111.2506397-CDS-H-elongata_contig11492:6413..64761691679111.2506397-CDS-H-elongata_contig11492:6413..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 6414..6476 +
1622929665.4795687-CDS-H-elongata_contig11492:6645..67511622929665.4795687-CDS-H-elongata_contig11492:6645..6751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 6646..6751 +
1691679111.2709017-CDS-H-elongata_contig11492:6645..67511691679111.2709017-CDS-H-elongata_contig11492:6645..6751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 6646..6751 +
1622929665.4943204-CDS-H-elongata_contig11492:7652..77211622929665.4943204-CDS-H-elongata_contig11492:7652..7721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 7653..7721 +
1691679111.2817488-CDS-H-elongata_contig11492:7652..77211691679111.2817488-CDS-H-elongata_contig11492:7652..7721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 7653..7721 +
1622929665.509454-CDS-H-elongata_contig11492:8150..82311622929665.509454-CDS-H-elongata_contig11492:8150..8231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 8151..8231 +
1691679111.2913601-CDS-H-elongata_contig11492:8150..82311691679111.2913601-CDS-H-elongata_contig11492:8150..8231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 8151..8231 +
1622929665.5262773-CDS-H-elongata_contig11492:8522..86231622929665.5262773-CDS-H-elongata_contig11492:8522..8623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 8523..8623 +
1691679111.298921-CDS-H-elongata_contig11492:8522..86231691679111.298921-CDS-H-elongata_contig11492:8522..8623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11492 8523..8623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11492.1193.1

>prot_H-elongata_contig11492.1193.1 ID=prot_H-elongata_contig11492.1193.1|Name=mRNA_H-elongata_contig11492.1193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
SADYTRHVNDPEVRAQTYEGVVARMLWASILHPFDLIATRMITESSTQYS
TVASSVSHVLEHRGVTGLFLGVRSSIFNVLLPFGKLYLMGVPSLIKTRRM
LDGMDTVFRAGMGGSLDIVRTILKEEGFAGLFAGYRATLWGIGPAFLSLC
GARLLVYVLMGSSRRT*
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mRNA from alignment at H-elongata_contig11492:5992..8623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11492.1193.1 ID=mRNA_H-elongata_contig11492.1193.1|Name=mRNA_H-elongata_contig11492.1193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2632bp|location=Sequence derived from alignment at H-elongata_contig11492:5992..8623+ (Himanthalia elongata Himel1 dioecious)
TCAGCGGACTACACTAGACACGTGAACGATCCTGAAGTGCGCGCTCAGAC
CTACGAGGGGGTCGTGGCCAGGATGCTCTGGGTGAGTCCTGTTGTTGGTG
TTATGTGACTCGCCCAATCCTAGGCATTCCATGCTCGACTGCTAGATGGT
GGTGTTAATAATAGTTAATAGTTACTTTCAGCTTCCAGCAGAGTTGTCGA
AATCACTATCGTAAAGCGCAGTATGTGGCCTGAGACAGGACAATTAGTCA
ATGTCGTTCAGTTTTGAGCCATTATATTGCTTTGAAGAAGAAAAACATAG
GATGGCAGTTCGAAGACATAGGGATCATGTGATCGGCTCCCTCTGTCTCT
TCCTGACGTCATATTCTCCCTCTGTCTCCTCTACCACAATACCGTGGTGG
ACCGCGCTGTTTCTTACGCAAGGCGAGCATTTTGCACCCTTTTGACCTCA
TCGCCACCAGGATGATCACCGAGTCCAGCACACAGGTGATGCTGACTTTT
GGAAATAAAATAATGATGTTGATCTATATTCTGATGCAGCGAAACACGCG
CAGTCGATTGGGAGCCAAAGTGTTGTTGATCTTTTCTTGAATCATTGTGA
CCCATAACGTCGCTCTAGTTCTTGCTCTCATATCTTGCCCTCTGGTGGCA
TCAGTATTCCACGGTGGCGTCGTCAGTCAGCCATGTGCTGGAACATCGAG
GCGTGACGGGGCTGTTTCTGGGGGTGCGGTCGTCCATATTCAACGTGCTC
TTGCCCTTCGGTCAGTGCCATAATCTAACCCCAACCCTGAATCTTTTAGA
TTGCGCTCCCCTCATTGCGATTACACCGATGCTGTACGTTGCGCGTGGAC
TTTTTGTCGTTTGCTCATTTATTTGCTGTCACCCTGGGGCGCGATCTCGA
AGGTGGTTACAACGGTGAACAGGGTTAGTCTAAAGTGTATAAAAAGTAGA
GGTAGATGGTTGAGTATACTCCACCCCATGCTCCGCGAGCGATGCGCAGA
GGCAGGGATTGATATCCAGTACGAAATTATCTAGAAATCTTGTTTAATTG
GACGCGGAAGCGTGTGTTCTTTCGTGAAAAAAGAACGGGGCATACTCGCT
GGATGCCCCCACCCTTTCTCAAAACAACCATGTTATCATTATGTACCAAT
GTAGTGTGACCACAGCGCAGCATCCGGAGACCGCAGCCCCTGAAGCTTGG
TCCCTCAGTGTTTCGGCCCCTCGCCGGCCCCCGCTGATATTGTTGAGATC
TTTGAGATCACACCCTAACCCTACCCCCTCATTTGAGACCGTGCCGATGC
GATATCCGAAATACGAAAGGTTTTCGCCTTCGTACTCGGTGCCTACCTCA
TGACTGATGTGCCTAAATTGTGCTTAGGATTTTGCAGCAGACAATAGACG
CCGCAATGGGGTCGGATCAAGCGAAATATCTAATGGTCCTATTTCATTAC
GAGAATGAAGCTGCTGCACAGCAGCTGATGATGTCTCCTTCCTTTATGAA
TGTACTGTACTATAGCGTATACCTTGCATGAGCTATTAATAACTCTTTGT
CAGCAAAAGCAACGTACGGCCCTTATCCTGAATGTCCCCTGTATTATAGT
ACATTTCTCCTCTCCAATGCTGCACGCTGTTGATATGTGATTGCAAACAT
CCGTGCTGAAGGTAAGTTGTACCTGATGGGCGTACCGTCCCTCATCAAGA
CGCGCAGAATGCTGGATGGTATGGACACCGGTGAGGGAATATCTTAAAAC
AAAGTATCGACTTGTATCACATGCTAACGAATACGTCCTTCGATCTTGTA
GCCAGCATTGACCATAGCTCTGACTCTCCCATCGTTTGAGTACCATAATG
TTCATATAGTGTTTGGAGAGAATACGCCCTCCGAGCTCCGGGGACGGGAC
TGTGCATGCCGCCACCGTTCCTTTGTTTATTTACTGTACTGTAAATAGAA
AACGATGTCCCACAGTCCCACAGCGGCGAACGTCCGAGATTCGTTACTGT
TTTGGTCATGCAAGATCTTCCCGTTGGAGCGTGTTCTTGGAGATGTTTCG
CTACAGTGTGTCCACGCCGTTGCATCTTTCAGTTGATTTGGCGCCTTTAA
TTGTTCCTCAGCTTTCATTATTCCTTTCCTCCATTGTTGCTTTGTTGGGG
TGTGTGCAGTGTTTCGAGCTGGAATGGGCGGCAGCCTGGACATCGTGAGG
ACTATCTTGAAGGAGGAAGGCTTCGCCGGTCTCTTCGCAGGTACTCCACG
ACTTCGTTACTAATAAGAATGCCACCGAGTCGAGTTGTGCTGGAACTCCA
TTTTACATTAGTTTATATTGGGGCTTGTTCGTGTGTACCTTTTCATACCG
ACCGTACGGTCTGATTTGGTGAGGAGCTTGAGTCCCGACTGTCCCCATAC
CTCCCTAATCGCACGGGGTAGTGCAAAAGCTGCATCCACCCTCGCCATGT
CATGCATCATCCGCCCCTTCGGTTAATCTGAGTCTATTAACGGTTGACGC
ACCGCCTGGTTACACCCAACTGGCGTTACAGGGTACCGTGCGACGCTATG
GGGGATCGGACCCGCCTTCCTGAGCCTGTGTGGCGCAAGACTGTTGGTCT
ACGTGCTCATGGGCTCCTCCCGAAGAACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11492:5992..8623+

>mRNA_H-elongata_contig11492.1193.1 ID=mRNA_H-elongata_contig11492.1193.1|Name=mRNA_H-elongata_contig11492.1193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig11492:5992..8623+ (Himanthalia elongata Himel1 dioecious)
TCAGCGGACTACACTAGACACGTGAACGATCCTGAAGTGCGCGCTCAGAC
CTACGAGGGGGTCGTGGCCAGGATGCTCTGGTCAGCGGACTACACTAGAC
ACGTGAACGATCCTGAAGTGCGCGCTCAGACCTACGAGGGGGTCGTGGCC
AGGATGCTCTGGGCGAGCATTTTGCACCCTTTTGACCTCATCGCCACCAG
GATGATCACCGAGTCCAGCACACAGGCGAGCATTTTGCACCCTTTTGACC
TCATCGCCACCAGGATGATCACCGAGTCCAGCACACAGTATTCCACGGTG
GCGTCGTCAGTCAGCCATGTGCTGGAACATCGAGGCGTGACGGGGCTGTT
TCTGGGGGTGCGGTCGTCCATATTCAACGTGCTCTTGCCCTTCGTATTCC
ACGGTGGCGTCGTCAGTCAGCCATGTGCTGGAACATCGAGGCGTGACGGG
GCTGTTTCTGGGGGTGCGGTCGTCCATATTCAACGTGCTCTTGCCCTTCG
GTAAGTTGTACCTGATGGGCGTACCGTCCCTCATCAAGACGCGCAGAATG
CTGGATGGTATGGACACCGGTAAGTTGTACCTGATGGGCGTACCGTCCCT
CATCAAGACGCGCAGAATGCTGGATGGTATGGACACCGTGTTTCGAGCTG
GAATGGGCGGCAGCCTGGACATCGTGAGGACTATCTTGAAGGAGGAAGGC
TTCGCCGGTCTCTTCGCAGTGTTTCGAGCTGGAATGGGCGGCAGCCTGGA
CATCGTGAGGACTATCTTGAAGGAGGAAGGCTTCGCCGGTCTCTTCGCAG
GGTACCGTGCGACGCTATGGGGGATCGGACCCGCCTTCCTGAGCCTGTGT
GGCGCAAGACTGTTGGTCTACGTGCTCATGGGCTCCTCCCGAAGAACGTG
AGGTACCGTGCGACGCTATGGGGGATCGGACCCGCCTTCCTGAGCCTGTG
TGGCGCAAGACTGTTGGTCTACGTGCTCATGGGCTCCTCCCGAAGAACGT
GA
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