prot_H-elongata_contig4785.11921.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4785.11921.1
Unique Nameprot_H-elongata_contig4785.11921.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length514
Homology
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 6.020e-27
Identity = 123/417 (29.50%), Postives = 161/417 (38.61%), Query Frame = 0
Query:  148 GRGEPSDADADDSKWACQRCTYLNHSSMPRCEICDASVPEDERPPDERFADTLLD-----------YNDLGCYGSRGQRQRRRSTSDYSENSPYTLMHERVGVGVSTRGGASGGLPRVGGANIDAGRAASDAVRGSAIGAVGAGVLTSMNHNARRGQILASMLQGAVAGGVAGAALGRGLRPEAGSSGGRREDHGVEHD-------------------DAFRSEQDPDGFGRPTRGR-------AGLLGESLESVS---QRQAFRQQG----------LASGVDDDVALLLRHNRRVGDPERVFVRLNRNEWETPTRDGMPPARLLHMLSFLNRRQNPATERRRASPEAIAALPEETLSATSLSCLGDD-TQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            G GE  D     + WAC  CTYLN   + RC++C   +   +RPPD  + DTL+                                                           GL       +D     S A  GSAIGA+G  +L+++   AR   +++SM QGA+ GG+AGAALG GL  E G+                                 +F   + P    R  RGR       + +L   LE++S      A R++G          + +G+   +A    H+   GD                   G  PA                      S  AIAALP E L+A +L+ L DD  QCCICLEDF  G   TRLPCLH YHT CI +WL+TSGTCP CK RV
Sbjct:  106 GEGESGDT----TTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQGL-------LDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGGMAGAALG-GLSDEPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSFEFVRGP--TARVRRGRDVVSEMESLMLARRLEALSLPASAAAMRREGGXXXXXXXSSIYAGILRQLAEAQNHDAAGGDAXXXX--------------GTSPA----------------------SARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRV 472          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.320e-19
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0
Query:  442 ASPEAIAALPEETLSATSLSCLGDD-TQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            AS  AIAALP ETL+A SL+ L DD  QCCICLE+F  G   TRLPCLH YH+ CI +WL+TSGTCP CK RV
Sbjct:  533 ASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRV 605          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A7S3LGX2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGX2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.440e-14
Identity = 102/365 (27.95%), Postives = 138/365 (37.81%), Query Frame = 0
Query:  162 WACQRCTYLNHSSMPRCEICDASVPEDERPPDERFADTLLDYNDLGCYGSRGQRQRRRSTSDYSENSPYTLMHERVGVGVSTRGGASGGLPRVGGANIDAGRAASDAVRGSAIGAVGAGVLTSMNHNARRGQILAS-MLQGAVAGGVAGAALGRGLRPEAGSSGGRREDHGVEHDDA--------FRSEQDPDGFGRPTRGRAGLLGESLESVSQRQAFRQQGLASGVDDDVALLLRHNRRVGDPERVFVRLNRNEWETPTR----DGMPPARLLHMLSFLNRRQNPATERRRASPEAIAALPEETLSATSLSCLGDDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            W C RCT  N +S   CE C    PE ERPPD+                                     +  ER+ +G    GG SGGL  + GA          A+ GS +G  GA +         RGQ L+S +L GA+ G V+G  L    R E    G   +        A            + PDG    TR   G    +        A     +A+  ++++  LL           +  +L RN+     +    D M   +LL M           TE   A    I +LP  T+         D  QC ICLEDF  G     +PCLH +H  C+  WLRT+G+CP+CKHR+
Sbjct:  192 WCCPRCTLQNSASSSSCEACSFRRPETERPPDQ-------------------------------------VRRERL-IGEPQPGG-SGGL--ISGA----------ALLGSVLGGTGAYL---------RGQPLSSGLLNGAMTGAVSGVVLNELARNETRQGGPLMQQQSQTFVSAGSWPAIQSISIVRTPDGRVVATRSGNGTSSTASYGGGGGVARANPPVANNPNNELNQLL--------SSLIAHQLIRNQGGAQQQRMNPDQMSYEQLLQMFGS-------GTENMAAGERQIRSLPSATIQDVD-KLPPDSRQCSICLEDFKTGDERKIMPCLHGFHADCVDKWLRTNGSCPICKHRL 480          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A1E7FA57_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA57_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.040e-12
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 0
Query:  437 TERRRASPEAIAALPEETLSATSL---SCLGDDT-QCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            TE   A    I  LP   L    L   S L +D  QC ICLEDF  G   + LPCLH +HT C   WLRT+G+CP+CKHR+
Sbjct:   14 TENLGADEGDIRQLPTHILKDDPLKGPSALPEDARQCLICLEDFAKGERRSILPCLHGFHTNCSTKWLRTNGSCPICKHRI 94          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A6G1C942_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C942_9ORYZ)

HSP 1 Score: 72.0 bits (175), Expect = 6.200e-12
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0
Query:  442 ASPEAIAALPEETLSATSLSCLGDDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            A+ EAIA L E  L   ++     + +C +C+EDF  G  +  +PC H +H  CI DWLR SG CP+C+HR+
Sbjct:   22 ATSEAIAGLREARLDDEAMI---REEECAVCMEDFEAGDKLRAMPCSHCFHERCIFDWLRVSGICPLCRHRL 90          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A7S0GK16_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GK16_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.050e-11
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 0
Query:  465 DDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKH 511
            +D +C ICL+D+C G  V  LPC H +H+ C+  WLR++G+CP+CKH
Sbjct:   90 EDDRCTICLDDYCPGERVKTLPCRHNFHSECLEKWLRSNGSCPICKH 136          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A7J0H3T5_9ERIC (RING-type domain-containing protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H3T5_9ERIC)

HSP 1 Score: 69.7 bits (169), Expect = 1.220e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:  463 LGDDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            L     C ICL++FC+G  VTR+PC H YH  CI +WL+TS  CP+C+ R+
Sbjct:   86 LDGSDHCTICLDEFCVGSEVTRMPCSHVYHQDCIVEWLKTSNLCPLCRFRM 136          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A7S1W7T4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W7T4_ALECA)

HSP 1 Score: 71.2 bits (173), Expect = 1.250e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0
Query:  436 ATERRRASPEA-IAALPEETLSATSLSCLGDDT-QCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKH 511
            A E+  AS  A + ALP  TL++  L+   +D  +C IC+ +F  G     LPC H +H AC+  WLR  G+CP+CKH
Sbjct:  109 AEEQNSASFSAMVRALPVRTLTSADLANADEDQRECAICIREFTRGDKQRTLPCFHHFHPACVDQWLRRKGSCPICKH 186          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A448ZCN4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCN4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.420e-10
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 0
Query:  437 TERRRASPEAIAALPEETLSATSLSCLGDDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            TE   A    I  LP   +    L    D  QC ICLEDF  G + T LPCLH +H  C H WL+T+G+CPVCK+R+
Sbjct:  601 TENLGAQESEIRRLPVHVVGDVPLP--EDARQCLICLEDFEKGEMRTILPCLHGFHQNCCHKWLKTNGSCPVCKYRI 675          
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Match: A0A0D9XP18_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XP18_9ORYZ)

HSP 1 Score: 68.6 bits (166), Expect = 2.940e-10
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0
Query:  442 ASPEAIAALPEETLSATSLSCLGDDTQCCICLEDFCLG----HVVTRLPCLHPYHTACIHDWLRTSGTCPVCKHRV 513
            A+ EAIA L      A S+     + +C +C+EDF  G      + ++PC H +H  CI DWLR SG CP+C+HR+
Sbjct:   61 AASEAIAGL-----MAASVDEASRERECAVCMEDFVAGGGGEQQLRKMPCSHCFHEGCIFDWLRVSGVCPLCRHRL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4785.11921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR18_ECTSI6.020e-2729.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L176_9PHAE5.320e-1967.12RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3LGX2_9STRA1.440e-1427.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FA57_9STRA1.040e-1248.15RING-type domain-containing protein n=1 Tax=Fragil... [more]
A0A6G1C942_9ORYZ6.200e-1243.06RING-type domain-containing protein n=1 Tax=Oryza ... [more]
A0A7S0GK16_9STRA5.050e-1151.06Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7J0H3T5_9ERIC1.220e-1050.98RING-type domain-containing protein n=1 Tax=Actini... [more]
A0A7S1W7T4_ALECA1.250e-1042.31Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A448ZCN4_9STRA1.420e-1046.75Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A0D9XP18_9ORYZ2.940e-1040.79RING-type domain-containing protein n=1 Tax=Leersi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 160..184
e-value: 2.5E-6
score: 37.0
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 162..181
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 158..187
score: 8.163
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 469..509
e-value: 3.0E-5
score: 33.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 468..510
e-value: 1.7E-9
score: 37.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 469..510
score: 11.693
NoneNo IPR availableGENE3D2.20.28.140coord: 156..202
e-value: 1.1E-9
score: 39.9
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 173..513
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 463..512
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 427..513
e-value: 7.9E-18
score: 65.9
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 158..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4785contigH-elongata_contig4785:3006..4547 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4785.11921.1mRNA_H-elongata_contig4785.11921.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4785 2975..5771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4785.11921.1 ID=prot_H-elongata_contig4785.11921.1|Name=mRNA_H-elongata_contig4785.11921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=514bp
MHCARSGCSSPEPLNVFASDEPVSTETGSWRECDIQRIRAAAAVEDRTRR
EQERRRILFPRPSQPQEPPESSMSDGDDPTWERFLAEAIARSLRDDDARG
EPRWSSAIGAATEPGESRLVPAGIDEHGAAVGMTEERTRQSRGDGRGGRG
EPSDADADDSKWACQRCTYLNHSSMPRCEICDASVPEDERPPDERFADTL
LDYNDLGCYGSRGQRQRRRSTSDYSENSPYTLMHERVGVGVSTRGGASGG
LPRVGGANIDAGRAASDAVRGSAIGAVGAGVLTSMNHNARRGQILASMLQ
GAVAGGVAGAALGRGLRPEAGSSGGRREDHGVEHDDAFRSEQDPDGFGRP
TRGRAGLLGESLESVSQRQAFRQQGLASGVDDDVALLLRHNRRVGDPERV
FVRLNRNEWETPTRDGMPPARLLHMLSFLNRRQNPATERRRASPEAIAAL
PEETLSATSLSCLGDDTQCCICLEDFCLGHVVTRLPCLHPYHTACIHDWL
RTSGTCPVCKHRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR036443Znf_RanBP2_sf