mRNA_H-elongata_contig114901.1192.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114901.1192.1
Unique NamemRNA_H-elongata_contig114901.1192.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: UPI001ED88D38 (S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1 n=4 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88D38)

HSP 1 Score: 50.8 bits (120), Expect = 9.720e-6
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   13 ETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNS 150
            + L+ VVR++G+FA+GN  +Q ++Q G  PT+L +LC LPF Y +S
Sbjct: 1912 DLLHEVVRVVGFFAVGNHDNQAIIQSGYMPTVLQQLCILPFEYFSS 1957          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A7D9HQ84_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HQ84_PARCT)

HSP 1 Score: 50.1 bits (118), Expect = 1.790e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   13 ETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            E L+ V+ ++GYF + N  +Q  +Q G PPT+L +LC+LPF+Y ++ R
Sbjct:  610 ELLHEVILIIGYFTVLNPDNQVFVQSGRPPTLLQKLCSLPFQYFSNPR 657          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: UPI00106C8D3C (S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8D3C)

HSP 1 Score: 50.1 bits (118), Expect = 1.810e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   13 ETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            E L+ V+ ++GYF + N  +Q  +Q G PPT+L +LC+LPF+Y ++ R
Sbjct: 1337 ELLHEVILIIGYFTVLNPDNQVFVQSGRPPTLLQKLCSLPFQYFSNPR 1384          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: UPI001AAD0EE3 (S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1 n=6 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD0EE3)

HSP 1 Score: 49.7 bits (117), Expect = 2.480e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   10 EETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            EE L+ ++  +GYF + N  +Q ++Q G  PT+L +LC LPF+Y + SR
Sbjct: 1314 EELLHEIIVCVGYFTVNNLDNQVIVQSGRHPTVLQKLCQLPFQYFSDSR 1362          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: H2Z9I0_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z9I0_CIOSA)

HSP 1 Score: 49.3 bits (116), Expect = 3.150e-5
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   19 LNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSRTGLSFIL 177
            L+ V+  +GYF +GNR++Q+++  G+ PTIL +LC LPF Y   S  GL  IL
Sbjct:  153 LHEVIVCVGYFTIGNRNNQDIVNSGAQPTILQQLCLLPFPYF--SNRGLMSIL 203          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A7S0NAN4_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAN4_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 3.280e-5
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   19 LNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRY 141
            +  V+ L GYF L    HQ++++WG+ PTIL +LC++PF Y
Sbjct:  244 MEAVLLLTGYFCLLQPAHQDVMRWGTSPTILQKLCSVPFEY 284          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A5B8MTA7_9CHLO (SCAPER_N domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTA7_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 3.380e-5
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    7 AEETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRY 141
            A + LN V+ L+G F + N  +Q +L WG  PTIL +LC LPF Y
Sbjct:  959 ASKLLNEVILLVGNFVVLNPANQAVLHWGKSPTILEKLCQLPFNY 1003          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A672IF22_SALFA (SCAPER_N domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IF22_SALFA)

HSP 1 Score: 48.5 bits (114), Expect = 6.310e-5
Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    7 AEETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            AEE L+ V+  +GYF + +  +Q ++Q G  P++L +LC LPFRY + +R
Sbjct:  723 AEELLHEVIICVGYFTVNHPDNQVIVQSGRQPSVLQKLCQLPFRYFSHAR 772          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A672IDM3_SALFA (C2H2-type domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IDM3_SALFA)

HSP 1 Score: 48.5 bits (114), Expect = 6.350e-5
Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    7 AEETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            AEE L+ V+  +GYF + +  +Q ++Q G  P++L +LC LPFRY + +R
Sbjct: 1167 AEELLHEVIICVGYFTVNHPDNQVIVQSGRQPSVLQKLCQLPFRYFSHAR 1216          
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Match: A0A672ICV0_SALFA (C2H2-type domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672ICV0_SALFA)

HSP 1 Score: 48.5 bits (114), Expect = 6.350e-5
Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    7 AEETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNSSR 156
            AEE L+ V+  +GYF + +  +Q ++Q G  P++L +LC LPFRY + +R
Sbjct: 1219 AEELLHEVIICVGYFTVNHPDNQVIVQSGRQPSVLQKLCQLPFRYFSHAR 1268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114901.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI001ED88D389.720e-647.83S phase cyclin A-associated protein in the endopla... [more]
A0A7D9HQ84_PARCT1.790e-543.75Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI00106C8D3C1.810e-543.75S phase cyclin A-associated protein in the endopla... [more]
UPI001AAD0EE32.480e-542.86S phase cyclin A-associated protein in the endopla... [more]
H2Z9I0_CIOSA3.150e-547.17Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
A0A7S0NAN4_9CHLO3.280e-546.34Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A5B8MTA7_9CHLO3.380e-548.89SCAPER_N domain-containing protein n=1 Tax=Chlorop... [more]
A0A672IF22_SALFA6.310e-542.00SCAPER_N domain-containing protein n=1 Tax=Salaria... [more]
A0A672IDM3_SALFA6.350e-542.00C2H2-type domain-containing protein n=1 Tax=Salari... [more]
A0A672ICV0_SALFA6.350e-542.00C2H2-type domain-containing protein n=1 Tax=Salari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114901contigH-elongata_contig114901:1386..1574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.3949995-CDS-H-elongata_contig114901:1385..15741622929665.3949995-CDS-H-elongata_contig114901:1385..1574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114901 1386..1574 +
1691679111.223757-CDS-H-elongata_contig114901:1385..15741691679111.223757-CDS-H-elongata_contig114901:1385..1574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114901 1386..1574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114901.1192.1prot_H-elongata_contig114901.1192.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114901 1386..1574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114901.1192.1

>prot_H-elongata_contig114901.1192.1 ID=prot_H-elongata_contig114901.1192.1|Name=mRNA_H-elongata_contig114901.1192.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
KEAEETLNGVVRLLGYFALGNRHHQEMLQWGSPPTILVRLCNLPFRYVNS
SRTGLSFILNLGC
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mRNA from alignment at H-elongata_contig114901:1386..1574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114901.1192.1 ID=mRNA_H-elongata_contig114901.1192.1|Name=mRNA_H-elongata_contig114901.1192.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig114901:1386..1574+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGCGGAGGAAACGCTCAACGGGGTGGTTCGCCTGCTGGGTTATTT CGCCCTCGGCAATCGCCATCACCAAGAAATGCTGCAGTGGGGCTCGCCCC CGACGATATTGGTTCGCCTGTGCAACCTCCCCTTTCGGTACGTTAACTCT TCCCGAACTGGATTAAGTTTTATATTGAATTTAGGATGT
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Coding sequence (CDS) from alignment at H-elongata_contig114901:1386..1574+

>mRNA_H-elongata_contig114901.1192.1 ID=mRNA_H-elongata_contig114901.1192.1|Name=mRNA_H-elongata_contig114901.1192.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig114901:1386..1574+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGCGGAGGAAACGCTCAACGGGGTGGTTCGCCTGCTGGGTTATTT
CGCCCTCGGCAATCGCCATCACCAAGAAATGCTGCAGTGGGGCTCGCCCC
CGACGATATTGGTTCGCCTGTGCAACCTCCCCTTTCGGTACGTTAACTCT
TCCCGAACTGGATTAAGTTTTATATTGAATTTAGGATGTAAGGAGGCGGA
GGAAACGCTCAACGGGGTGGTTCGCCTGCTGGGTTATTTCGCCCTCGGCA
ATCGCCATCACCAAGAAATGCTGCAGTGGGGCTCGCCCCCGACGATATTG
GTTCGCCTGTGCAACCTCCCCTTTCGGTACGTTAACTCTTCCCGAACTGG
ATTAAGTTTTATATTGAATTTAGGATGT
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