mRNA_H-elongata_contig47831.11919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47831.11919.1
Unique NamemRNA_H-elongata_contig47831.11919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47831.11919.1 vs. uniprot
Match: D8LQM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQM8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.260e-19
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 VKRQTFHLPHPVLSLGGRARILLLGMTQRQTLSQHMGETANHYHICISYAALAGTILHACNLVD 192
            +KRQ F+LP P++S GGR RI LLGM QRQTL + +G TANHYH CISYAAL GT L +C++ +
Sbjct:  249 MKRQQFNLPRPIVSFGGRVRIRLLGMAQRQTLPESVGATANHYHTCISYAALCGTFLLSCSIAN 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47831.11919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQM8_ECTSI2.260e-1962.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47831contigH-elongata_contig47831:3680..3871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_006260.1
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.5546699-CDS-H-elongata_contig47831:3679..38711622930789.5546699-CDS-H-elongata_contig47831:3679..3871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47831 3680..3871 -
1691679571.088429-CDS-H-elongata_contig47831:3679..38711691679571.088429-CDS-H-elongata_contig47831:3679..3871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47831 3680..3871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47831.11919.1prot_H-elongata_contig47831.11919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47831 3680..3871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47831.11919.1

>prot_H-elongata_contig47831.11919.1 ID=prot_H-elongata_contig47831.11919.1|Name=mRNA_H-elongata_contig47831.11919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
VKRQTFHLPHPVLSLGGRARILLLGMTQRQTLSQHMGETANHYHICISYA
ALAGTILHACNLVD
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mRNA from alignment at H-elongata_contig47831:3680..3871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47831.11919.1 ID=mRNA_H-elongata_contig47831.11919.1|Name=mRNA_H-elongata_contig47831.11919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig47831:3680..3871- (Himanthalia elongata Himel1 dioecious)
GTAAAGCGCCAAACGTTTCATCTGCCACATCCTGTCTTGAGCCTGGGCGG
GCGCGCGAGGATCCTCCTCCTCGGGATGACGCAGCGCCAGACTCTGAGTC
AGCACATGGGAGAGACAGCCAACCACTATCACATCTGCATTTCCTACGCT
GCCCTCGCAGGCACGATCCTTCACGCTTGCAACCTCGTGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig47831:3680..3871-

>mRNA_H-elongata_contig47831.11919.1 ID=mRNA_H-elongata_contig47831.11919.1|Name=mRNA_H-elongata_contig47831.11919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig47831:3680..3871- (Himanthalia elongata Himel1 dioecious)
GTAAAGCGCCAAACGTTTCATCTGCCACATCCTGTCTTGAGCCTGGGCGG
GCGCGCGAGGATCCTCCTCCTCGGGATGACGCAGCGCCAGACTCTGAGTC
AGCACATGGGAGAGACAGCCAACCACTATCACATCTGCATTTCCTACGCT
GCCCTCGCAGGCACGATCCTTCACGCTTGCAACCTCGTGGATGTAAAGCG
CCAAACGTTTCATCTGCCACATCCTGTCTTGAGCCTGGGCGGGCGCGCGA
GGATCCTCCTCCTCGGGATGACGCAGCGCCAGACTCTGAGTCAGCACATG
GGAGAGACAGCCAACCACTATCACATCTGCATTTCCTACGCTGCCCTCGC
AGGCACGATCCTTCACGCTTGCAACCTCGTGGAT
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