mRNA_H-elongata_contig4782.11918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4782.11918.1
Unique NamemRNA_H-elongata_contig4782.11918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4782.11918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4782contigH-elongata_contig4782:9123..9671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size417
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4782.11918.1prot_H-elongata_contig4782.11918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4782 9260..9671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.072254-UTR-H-elongata_contig4782:9122..92591622930789.072254-UTR-H-elongata_contig4782:9122..9259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4782 9123..9259 -
1691679570.8778572-UTR-H-elongata_contig4782:9122..92591691679570.8778572-UTR-H-elongata_contig4782:9122..9259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4782 9123..9259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.084399-CDS-H-elongata_contig4782:9259..92841622930789.084399-CDS-H-elongata_contig4782:9259..9284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4782 9260..9284 -
1691679570.8917065-CDS-H-elongata_contig4782:9259..92841691679570.8917065-CDS-H-elongata_contig4782:9259..9284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4782 9260..9284 -
1622930789.0970047-CDS-H-elongata_contig4782:9417..96711622930789.0970047-CDS-H-elongata_contig4782:9417..9671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4782 9418..9671 -
1691679570.8999944-CDS-H-elongata_contig4782:9417..96711691679570.8999944-CDS-H-elongata_contig4782:9417..9671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4782 9418..9671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4782.11918.1

>prot_H-elongata_contig4782.11918.1 ID=prot_H-elongata_contig4782.11918.1|Name=mRNA_H-elongata_contig4782.11918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
ARIRTSGACCSRRQAARPALSGKNLVLLTTSYTYYYFSKSTFEALKCSTS
RAKGGRVFRNSLDRRRYSLDCRVVQIITIVYHVYIALFSNTT*
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mRNA from alignment at H-elongata_contig4782:9123..9671-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4782.11918.1 ID=mRNA_H-elongata_contig4782.11918.1|Name=mRNA_H-elongata_contig4782.11918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig4782:9123..9671- (Himanthalia elongata Himel1 dioecious)
GCCAGGATAAGGACAAGTGGTGCATGCTGCAGTCGTCGGCAGGCGGCGCG
GCCTGCTCTCTCCGGCAAAAACTTAGTATTACTAACAACGTCCTACACTT
ACTATTACTTTTCTAAAAGCACTTTTGAAGCTTTGAAGTGCAGTACCTCT
AGAGCGAAAGGTGGCAGAGTATTCCGCAATAGCCTAGACCGTCGGCGATA
TAGCCTAGACTGTCGCGTTGTACAAATTATTACAATAGTTTATCATGTAT
ATATGCCGTGTATGTATGTATGTATGTATGTAGCTGTGCCGTGGTCATAT
TGGTCAGCCAGGGTATAGCACCTCAGACGTGCTCCAATTTACTTTCAACT
CCCCCTCCACACCGACTGCTGCCGGAGAATACGCAAGTGCGCTCTTTTCG
AACACCACATGATATCGCTTGCTTCATAATACAGCAGCATATCATAGCAT
ATCGTACTACAAGGTTTACAAGGCAGGGTCGTGGTGATGTTCCATGTCGA
GCCTCTTACTATGCCTTACTATCGTACTAGTAATAGTGAGGACTATTAC
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Coding sequence (CDS) from alignment at H-elongata_contig4782:9123..9671-

>mRNA_H-elongata_contig4782.11918.1 ID=mRNA_H-elongata_contig4782.11918.1|Name=mRNA_H-elongata_contig4782.11918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig4782:9123..9671- (Himanthalia elongata Himel1 dioecious)
GCCAGGATAAGGACAAGTGGTGCATGCTGCAGTCGTCGGCAGGCGGCGCG
GCCTGCTCTCTCCGGCAAAAACTTAGTATTACTAACAACGTCCTACACTT
ACTATTACTTTTCTAAAAGCACTTTTGAAGCTTTGAAGTGCAGTACCTCT
AGAGCGAAAGGTGGCAGAGTATTCCGCAATAGCCTAGACCGTCGGCGATA
TAGCCTAGACTGTCGCGTTGTACAAATTATTACAATAGTTTATCATGTAT
ATATGCCAGGATAAGGACAAGTGGTGCATGCTGCAGTCGTCGGCAGGCGG
CGCGGCCTGCTCTCTCCGGCAAAAACTTAGTATTACTAACAACGTCCTAC
ACTTACTATTACTTTTCTAAAAGCACTTTTGAAGCTTTGAAGTGCAGTAC
CTCTAGAGCGAAAGGTGGCAGAGTATTCCGCAATAGCCTAGACCGTCGGC
GATATAGCCTAGACTGTCGCGTTGTACAAATTATTACAATAGTTTATCAT
GTATATATTGCGCTCTTTTCGAACACCACATGATGCGCTCTTTTCGAACA
CCACATGA
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