mRNA_H-elongata_contig47797.11914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47797.11914.1
Unique NamemRNA_H-elongata_contig47797.11914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.110e-27
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:  343 PKKFLSILHDMLIAGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRK 534
            P KFLSIL+DML+ GN Q+WWERETGSVVIEDPQ+FEAETMPR+F DPK+S F RQLA YGF+K
Sbjct:   67 PTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFTDPKVSGFLRQLAFYGFKK 130
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: UPI0007EF915E (heat stress transcription factor A-2c-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF915E)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-7
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  343 PKKFLSILHDMLIAGNSQ--IWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            P  FLS + D++   N+   + W +E  S V+ DP  F  + +P+YF   K+S+F RQL +YGFRKV
Sbjct:   39 PPPFLSKICDIVDDPNTNHIVSWGKENNSFVVWDPDAFALQLLPKYFKHSKLSSFIRQLNTYGFRKV 105
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A8B9AMQ1_PHODC (heat stress transcription factor A-1-like isoform X3 n=5 Tax=Arecaceae TaxID=4710 RepID=A0A8B9AMQ1_PHODC)

HSP 1 Score: 57.8 bits (138), Expect = 1.310e-6
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:  280 VEQGGGGGIGAGSGDMTRKAPPKKFLSILHDMLI--AGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            VE+GGGGG       +    PP  FLS  ++M+     N  + W     S VI DP  F  + +P+YF    +S+F RQL +YGFRKV
Sbjct:    3 VEKGGGGGS-----SLVPVVPP--FLSKCYEMVEDPQTNGTVSWSETNNSFVIWDPATFCRDLLPKYFKHSNLSSFVRQLNTYGFRKV 83
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A6J0PKT9_ELAGV (heat stress transcription factor A-1 isoform X2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6J0PKT9_ELAGV)

HSP 1 Score: 56.2 bits (134), Expect = 4.390e-6
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:  280 VEQGGGGGIGAGSGDMTRKAPPKKFLSILHDMLIAGNSQ--IWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            VE+GGGGG       +    PP  FLS  ++M+    +   + W +   S VI DP  F  + +P+YF    +S+F RQL +YGFRKV
Sbjct:    3 VEKGGGGGS-----SLVPVVPP--FLSKCYEMVDDPQTDGTVSWSKTNNSFVIWDPASFCRDLLPKYFKHSNLSSFVRQLNTYGFRKV 83
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A444DKX5_ENSVE (HSF_DOMAIN domain-containing protein (Fragment) n=4 Tax=Musaceae TaxID=4637 RepID=A0A444DKX5_ENSVE)

HSP 1 Score: 55.5 bits (132), Expect = 8.300e-6
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  313 GSGDMTRKAPPKKFLSILHDMLI--AGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            G   +    PP  FLS  +DM+   + +  + W + + S VI DP  F  + +P+YF    +S+F RQL +YGF KV
Sbjct:   33 GGSSLVPALPP--FLSKCYDMVDDPSTDDTVSWSKTSNSFVIWDPHAFSQDLLPKYFKHSNLSSFVRQLNTYGFHKV 107
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A166H4L7_DAUCS (HSF_DOMAIN domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166H4L7_DAUCS)

HSP 1 Score: 54.3 bits (129), Expect = 1.880e-5
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  337 APPKKFLSILHDMLIAG--NSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            A P  FL+ + D++     N  + W +   S VI DP  F  + +P+YF    +S+F RQL +YGFRKV
Sbjct:   37 ASPPPFLAKICDLVDDSRTNHIVSWSKGNNSFVIWDPDSFANQLLPKYFKHSNLSSFIRQLNTYGFRKV 105
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A498HND2_MALDO (HSF_DOMAIN domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HND2_MALDO)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-5
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  343 PKKFLSILHDMLIA--GNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYG 525
            P  FL+  +DM+     N  + W RE GS V+ DP IF    +P+YF    +S+F RQL +YG
Sbjct:   60 PPPFLNKTYDMVDDPDSNQVVSWSRERGSFVVWDPYIFVMSLLPKYFKHNNLSSFVRQLNTYG 122
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A2I0A371_9ASPA (Heat stress transcription factor A-1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A371_9ASPA)

HSP 1 Score: 53.5 bits (127), Expect = 3.610e-5
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:  310 AGSGDMTRKAPPKKFLSILHDMLI--AGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            +G   +    PP  FL+  +DM+   A N  + W     + VI+D   F  + +P+YF    IS+F RQL +YGFRKV
Sbjct:    9 SGGAPLPPLLPP--FLTKCYDMVDDPATNDTVCWGDSGDTFVIKDQHTFSRDLLPKYFKHSNISSFIRQLNTYGFRKV 84
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: UPI0018AE34E4 (heat stress transcription factor A-1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE34E4)

HSP 1 Score: 53.1 bits (126), Expect = 4.980e-5
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:  319 GDMTRKAPPKKFLSILHDML--IAGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            G++   APP  FLS  +D++   A +  + W +   S VI D   F  E +P+YF    +S+F RQL +YGF K 
Sbjct:   11 GELLAMAPP--FLSKCYDIVDDSATDGTVSWGKNGDSFVIWDSHTFSRELLPKYFKHSNLSSFVRQLNTYGFHKA 83
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BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Match: A0A6P5FW19_ANACO (heat shock factor protein HSF8-like n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FW19_ANACO)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-5
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:  340 PPKKFLSILHDMLI--AGNSQIWWERETGSVVIEDPQIFEAETMPRYFPDPKISTFYRQLASYGFRKV 537
            PP  FL+  +DM+   A ++ + W     S VI DP  F  + +P+YF    IS+F RQL +YGF KV
Sbjct:   35 PP--FLTKCYDMVDDPATDATVSWSEGNNSFVIWDPHAFARDLLPKYFKHNNISSFVRQLNTYGFHKV 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47797.11914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FIP9_ECTSI1.110e-2778.13HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
UPI0007EF915E3.420e-741.79heat stress transcription factor A-2c-like n=1 Tax... [more]
A0A8B9AMQ1_PHODC1.310e-639.77heat stress transcription factor A-1-like isoform ... [more]
A0A6J0PKT9_ELAGV4.390e-638.64heat stress transcription factor A-1 isoform X2 n=... [more]
A0A444DKX5_ENSVE8.300e-636.36HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A166H4L7_DAUCS1.880e-539.13HSF_DOMAIN domain-containing protein n=1 Tax=Daucu... [more]
A0A498HND2_MALDO2.640e-541.27HSF_DOMAIN domain-containing protein n=1 Tax=Malus... [more]
A0A2I0A371_9ASPA3.610e-537.18Heat stress transcription factor A-1 n=1 Tax=Apost... [more]
UPI0018AE34E44.980e-537.33heat stress transcription factor A-1-like n=1 Tax=... [more]
A0A6P5FW19_ANACO5.070e-541.18heat shock factor protein HSF8-like n=4 Tax=Ananas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47797contigH-elongata_contig47797:1467..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-27_000590.1
Exons4
Model size543
Cds size543
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47797.11914.1prot_H-elongata_contig47797.11914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47797 1467..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.7885664-CDS-H-elongata_contig47797:1466..15431622930788.7885664-CDS-H-elongata_contig47797:1466..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 1467..1543 +
1691679570.7597737-CDS-H-elongata_contig47797:1466..15431691679570.7597737-CDS-H-elongata_contig47797:1466..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 1467..1543 +
1622930788.805804-CDS-H-elongata_contig47797:2092..24331622930788.805804-CDS-H-elongata_contig47797:2092..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 2093..2433 +
1691679570.768276-CDS-H-elongata_contig47797:2092..24331691679570.768276-CDS-H-elongata_contig47797:2092..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 2093..2433 +
1622930788.8234885-CDS-H-elongata_contig47797:2784..28251622930788.8234885-CDS-H-elongata_contig47797:2784..2825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 2785..2825 +
1691679570.7770228-CDS-H-elongata_contig47797:2784..28251691679570.7770228-CDS-H-elongata_contig47797:2784..2825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 2785..2825 +
1622930788.8417587-CDS-H-elongata_contig47797:3436..35201622930788.8417587-CDS-H-elongata_contig47797:3436..3520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 3437..3520 +
1691679570.7861478-CDS-H-elongata_contig47797:3436..35201691679570.7861478-CDS-H-elongata_contig47797:3436..3520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47797 3437..3520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47797.11914.1

>prot_H-elongata_contig47797.11914.1 ID=prot_H-elongata_contig47797.11914.1|Name=mRNA_H-elongata_contig47797.11914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
KKHPQQRQRQQQQWQHQQWGRQRQRPHTPATPTVSKPVEPPPSSEGSATP
CRNPVAVTGSAVDSTAGSNSPGLAESSGAGGSADEDKSGAEGFVEQGGGG
GIGAGSGDMTRKAPPKKFLSILHDMLIAGNSQIWWERETGSVVIEDPQIF
EAETMPRYFPDPKISTFYRQLASYGFRKVW*
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mRNA from alignment at H-elongata_contig47797:1467..3520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47797.11914.1 ID=mRNA_H-elongata_contig47797.11914.1|Name=mRNA_H-elongata_contig47797.11914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2054bp|location=Sequence derived from alignment at H-elongata_contig47797:1467..3520+ (Himanthalia elongata Himel1 dioecious)
AAGAAGCATCCACAGCAACGACAACGGCAACAGCAGCAATGGCAACATCA
ACAGTGGGGGCGACAGCGACAGCGGCCGTGGCCGCGCTAGGTGGGGAGGG
CGAACGAGGTTTGAGCACGGGACGGCGCTTGCGTGAATGGGACGCGCTCC
GCACAACCATGTCAGTGCCATCTTCCGCTTCGAGGGCTTTCAATTTCATT
AAGCATATAACACTAGGAAGAGGCAAGGGGCAGGGGCGTCGTGTGTGCTC
AACGAAAAGAACGTATCGCCGTGTAGAGGATCAGGCTGCTACGTATTGAC
GTACAGCAGGGATACATGTTTGTCGGCGTTGGTCCTTGATTCAAAAAGAC
CAGTGTACAAGCCCACGTACATGGTTCCAGAGATGTTGAGCAAGTCGGGA
TGTTGCTGTGGCGCATTCGTTGCGGTAGCTCCCTCTCCCGTTGGTTCGCC
AGTATCGCAACACCTCCCGTCTCTTCTAAGTACCACCGCGCGCCTCCCTA
CATGCCCCACCCTATGATTGCCCCTCACTCAAAAAGTCCCCTCGTCCAAT
CAGCTTTGAAGAGGCAGCGCGATCTGGAAGCCGCTCGTCCTCCAGCATCC
GCGGCAGATCCACCGGCGGCGAAGAGACACACGCCAGCCACTCCGACAGT
GTCAAAACCCGTTGAGCCGCCCCCATCCTCGGAAGGATCCGCCACTCCAT
GTAGAAACCCTGTCGCCGTTACTGGAAGCGCTGTCGACAGCACCGCCGGC
AGCAACAGCCCGGGGTTGGCTGAGTCAAGTGGGGCAGGTGGCTCAGCAGA
CGAGGATAAGAGCGGAGCAGAAGGGTTTGTAGAGCAAGGAGGCGGCGGTG
GGATAGGGGCGGGATCGGGAGACATGACACGAAAAGCACCACCAAAGAAA
TTTCTGTCGATCCTGCACGACATGCTCATCGCCGGAAACTCACAGATATG
GTGGGAGCGGGAGACAGGTGCGAATCTACCCGCGGTACACGGAAGCGGCG
ACTTGACACCCTTTTTTAAAAACATGACGTCGTGGCGTGTTTTGGAGCGA
GCGAGCGAAGCTTGAACTCAAAAAGACAAAATCACCGCGCTACCGGCTCG
AACCCAAACGGGTCGAAAGGCGTCACGGCCGCGCCGTTGGCGGTTTCCTC
CACGAACGGTTTCCCTCCAACGAGTCGGCCCGTCTGTCCCTTCCTCCCAC
GTTCCTCCTTAAAGCAAAGCCTGTCCGCCCTATTTTTGGTGTCCCCTCTC
GCGTGTCTTATGTGCCCGGAATATGGACCTCTTGGATTTCTTTGGGACGA
CACGTCGTGTGCTCGCAGGGAGCGTGGTGATCGAAGACCCTCAGATATTC
GAGGCTGAGGTAAAGAAGGGAGCAGCGATGCAACGCTCTACTCGTGCAAA
ACGATCGCTTTGCCTTTTGTTCGTGGGAGAGCGGTAGCGCCCCCCACGAG
GAGCGGGCACGCTACACTCGGAAGCCGAAGATTTCAAAGCTTGCAGGGAT
CAGGGGGGTAGGGGGGGGAGATGGGACGATTGGATGACAAGGTTGCATGC
GGTTTGTGGCACGCCATTGATGATGATTCTCTACTTTTTTTTTTCTTTAC
AAACGAGTCCCCGCTTTCATGGTGTAATCCGGACCCGCGCAGCAACCTTC
GTATCTTGCGCACGAGTATTTTTACTCTCCGAAAGGGTAGATTCCATAGG
GCGAAGGGAATGGGTTTTTTAAATGTTTTGGAGCGTAAATTCGGGGGGGG
GTATACACGAGGATTGAAAGCTCCAGTTGTTAGTTCTTCAGATAGCGAAC
CGTAGTCATCGGTACCGCTGACTGGTTGCTCTTGGGTTCACAGTAGGGAA
AAGGGTCCCTATCGTGGAATCAGTCTCCAAATCTGGTACTGTAACTCTCA
AATCAAAGACAATTGTAGATTCGGAATTTGATTCCAACGCCGCCCCCCCC
TCCCTCTGGGCGTCGTGCAGACGATGCCCCGTTACTTCCCGGACCCGAAG
ATCTCAACCTTCTACCGCCAACTCGCCTCCTACGGCTTCAGGAAGGTGTG
GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig47797:1467..3520+

>mRNA_H-elongata_contig47797.11914.1 ID=mRNA_H-elongata_contig47797.11914.1|Name=mRNA_H-elongata_contig47797.11914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig47797:1467..3520+ (Himanthalia elongata Himel1 dioecious)
AAGAAGCATCCACAGCAACGACAACGGCAACAGCAGCAATGGCAACATCA
ACAGTGGGGGCGACAGCGACAGCGGCCAAGAAGCATCCACAGCAACGACA
ACGGCAACAGCAGCAATGGCAACATCAACAGTGGGGGCGACAGCGACAGC
GGCCACACACGCCAGCCACTCCGACAGTGTCAAAACCCGTTGAGCCGCCC
CCATCCTCGGAAGGATCCGCCACTCCATGTAGAAACCCTGTCGCCGTTAC
TGGAAGCGCTGTCGACAGCACCGCCGGCAGCAACAGCCCGGGGTTGGCTG
AGTCAAGTGGGGCAGGTGGCTCAGCAGACGAGGATAAGAGCGGAGCAGAA
GGGTTTGTAGAGCAAGGAGGCGGCGGTGGGATAGGGGCGGGATCGGGAGA
CATGACACGAAAAGCACCACCAAAGAAATTTCTGTCGATCCTGCACGACA
TGCTCATCGCCGGAAACTCACAGATATGGTGGGAGCGGGAGACAGACACA
CGCCAGCCACTCCGACAGTGTCAAAACCCGTTGAGCCGCCCCCATCCTCG
GAAGGATCCGCCACTCCATGTAGAAACCCTGTCGCCGTTACTGGAAGCGC
TGTCGACAGCACCGCCGGCAGCAACAGCCCGGGGTTGGCTGAGTCAAGTG
GGGCAGGTGGCTCAGCAGACGAGGATAAGAGCGGAGCAGAAGGGTTTGTA
GAGCAAGGAGGCGGCGGTGGGATAGGGGCGGGATCGGGAGACATGACACG
AAAAGCACCACCAAAGAAATTTCTGTCGATCCTGCACGACATGCTCATCG
CCGGAAACTCACAGATATGGTGGGAGCGGGAGACAGGGAGCGTGGTGATC
GAAGACCCTCAGATATTCGAGGCTGAGGGAGCGTGGTGATCGAAGACCCT
CAGATATTCGAGGCTGAGACGATGCCCCGTTACTTCCCGGACCCGAAGAT
CTCAACCTTCTACCGCCAACTCGCCTCCTACGGCTTCAGGAAGGTGTGGT
AAACGATGCCCCGTTACTTCCCGGACCCGAAGATCTCAACCTTCTACCGC
CAACTCGCCTCCTACGGCTTCAGGAAGGTGTGGTAA
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