mRNA_H-elongata_contig11490.1191.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: D7FXE1_ECTSI (WD repeat-containing protein 60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE1_ECTSI) HSP 1 Score: 648 bits (1672), Expect = 4.820e-212 Identity = 461/1051 (43.86%), Postives = 577/1051 (54.90%), Query Frame = 1
Query: 7 GDGYEDEGFEEYSDEFESGEADNENQPSMAVLSRATPHGETREADGARPARSPIVSPALRMRNTQD-CKAPDDEALQELRYSLREENNIARQRKNAKLVTSALEVLPTADTKDNSQV-AARGEKKGFKSSKRPATQGRAQVMDRGEFLEKAYNGNNALSSAAAATARSRNSSFELADAKALTRALAKGDPRAKRVHAIRARLRLEVESTRLFDQSPITPIDLYHRRLRAQPAVIRQVASQTNDDARSVEAQTEEVPKFDKEIQFHLGHDDTTLENLMRCLRSTRRSSFRQTPDGRSKEDEEQNGENKQ-----GGLGVEKTPPGRRKT-FNVLSNTEGNGSG---GPMKICADG-GLEYDPLVSETTA------VQQPQRLRKFLLQACVVMETLCEENLSSAADRKSPKRSGQTE-------EDREEPGNKERSLFPG--GAHAKDWEELGVNVYVASKGSPKSAAA--------------------------GINILIDSSIVVGVAFSHAKRSMLVTAHARPAWH-----GVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGG-GSAGFIDPA-FGHAYAIVSLVLIPTSSEDDG--AGSGDFGDISSLGESNSFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRAR---------FPRLSFSSATSAGATA---ATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASEQCPTQGMG----TRDAQEAVAAVTSSP-------PMLALSSNSLTTGSQPRVTLVVHGRIFTRSLSRRMCRPAES 2904
G GY+DE FEEYSDEF+ GE ++E P + +AT TR +VSPAL+MR D +APDD+ L+ELR SLREEN AR+RK A+ E TAD K +S A RG GE G ++ ++A + S F++ADAKALTRALAKGDPRA+RV AIR RLEVES RLFDQ PI PIDLYHRRLR QPA+IRQ +QTNDDARSVE QT+E+ + KE+QFHLGHDDT LENLMR LRS RR R G E+ G+ +Q GG V + PG T F + N G +G G + A G ++D ++ + P RL KFL QA VVMETLCEENL A KR G + E + G + +LF G G + WEE+ + AA G L++ S VVGV FS KRSMLVTAHARP +D++ A +LEGCG VCVWN + + P++VL GEG+F C+CL Q HV++ GT EGCLLLWDLRE + E+++LGL CG+ +PTY TAGG G G G + A GH+ +VS+V IP+ + G G G G + SLG++ SFQVASLDDR TVSIW+ +E R DEGGSQT LGLSPGGR+R+ LSK+LRP + A R R PR S S+ T A+S A +A ALAFS EDPNRFL+ + + + HASRLG P PR++ PR P +L G G T E E +GGV+CL+FSPFF +YFLAGC +GSVRLY + VPL WE S +D R N GG W +I+S+AWSEHRPAVFFALD +G +H FDLLEDD P+ASE CP +G +R AAV P LALS+ +L TG +P+V L G +F ++L+ RM R + S
Sbjct: 200 GGGYDDECFEEYSDEFD-GEGEDEGPP--PPVGKATAASVTRPGSARGEGGGAVVSPALKMRRPGDNIQAPDDKVLEELRDSLREENIAARERKVARPSPKPSEAA-TADVKSSSDAKAVRGAXXXXXXXXXXXX-----XXTGGEASAAVAKGKFSVDASADVKRSRKGSGFKMADAKALTRALAKGDPRAERVRAIRGASRLEVESVRLFDQVPILPIDLYHRRLRGQPALIRQAGTQTNDDARSVEGQTDEIVQSHKEVQFHLGHDDTALENLMRRLRSNRRPPERHQAKG------EEGGQTQQRTVVDGGEDVPASGPGSATTTFKGIYNGNGMVAGTDPGEQEYPAPRYGTDFDGSSGRVSSAGGSDTLPPPLRLGKFLRQASVVMETLCEENLLHAP----VKRRGGSHPLDPARGEHEDAVGRERGALFSGAGGREGEGWEEVXXXXXXXXXXXXXATAAATEDTGSSTAEEKRRQGGDEGRVRGRGAGALLEGSEVVGVEFSKVKRSMLVTAHARPVGRRXXXXXXXXXXXXXXTDEREA--VLEGCGVVCVWNTENVQGAPVSVLCGEGLFSCLCLARHQAHVVITGTEEGCLLLWDLRETASEGRAAESRELGLHCGIRAPTYVTAGGDGRGEDGGLSKAGCGHSSKVVSVVAIPSPTGGVGMDGGGGGIGGMISLGDACSFQVASLDDRGTVSIWLASEVPRGDEGGSQTDLGLSPGGRVRLALSKALRPGDQPSLAAAVRPRGGGGAVPVSVPRFSTSTRNRLDQTTDTTASSAAAGSARALAFSPEDPNRFLIGDSSDRVTHASRLGKPPPPRAYGPPRRP------GERRLDGXXXG-----TGEEREGAMGGVTCLAFSPFFPKYFLAGCGDGSVRLYNEASVVPLTTWEAGSTAAADSRRN---------GGSSSSWPAAISSLAWSEHRPAVFFALDVLGMVHAFDLLEDDAGPVASEGCPDASVGVMERSRSPTNPPAAVVEDASSSSLALPTLALSNETLATGRRPKVALAFGGSVFAKTLAGRMFRQSRS 1209
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: A0A835Z6D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D0_9STRA) HSP 1 Score: 206 bits (523), Expect = 5.040e-51 Identity = 251/876 (28.65%), Postives = 335/876 (38.24%), Query Frame = 1
Query: 484 AAATARSRNSSFELADAKALTRALAKGDPRAKR------VHAIRARLRLEVESTRLFDQSPITPIDLYHRRLRA--------QPAVIRQVASQTNDDARSVEAQTEEVPKFDKEIQFHLGHDDTTLENLMRCLRSTRRSSFRQTPDGRSKEDEEQNGENKQGGLGVEKTPPGRRKTFNVLSNTEGNGSGGPMKICADGGLEYDPLVSETTAVQQPQRLRK---------------FLLQACVVMETLCEENLSSAADRKSPKRSGQTEEDREEPGNKERSLFPGGAHAKD----WEELGVNVYVASKGSPKSAAAG--INILIDSSIVVGVAFSHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNP-------DTSKETPMN----VLFGEGVFKCVCL-TLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDISSLGESNSFQVASLDDRSTVSIWVVTESKRIDEGGS--QTHLGLSPGGRIRMTLSKSL--RPVAEFGDCTANRARFPRLSFSSA--TSAGATAATSFA---PAAAHALAFSREDPNRFLVSGTCE-CIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASEQCPT------------QGMGTRDAQEAVAAVTSSPPMLALSSNSLTTGSQPRVTLVVHGRIFTRSLSRRMCRPAES 2904
AA A+ + LA+AKA+++ L R R + A RL E L+ +P+ P++ YH RLR+ QT DD R V QTE D E QFH+G DDT LEN++ R+ R +QG + PG T G G + G E V A ++ +LR FL V+E LC EN++ + + + E + G ++R+ G A A + WE LG A + + + +A+S A+ +L A+AR A VCVW DT P VL EG CVC PH+ L G +G + LWDLR P + CGL PTY TA A GHA A+ L + + ASLDDR V +W+ + D+GGS Q LGL+PGG +R+ S+++ R + TA+ R PR S +A TS + T A PAAA L F D NRFLV G + H SRLG P PR++C G+GG V CLS S F YFLAGC +GSVRL+ D A P+ VW+GF+ R ++ V WS HR AVF+ALD G LH FDLL DD P+ SE+C +G R AQ A A ALS+ L G+ P V +V R LS + R A++
Sbjct: 179 AALAAQPATQQYRLAEAKAVSQRLGGAAARGARCGXXXXARSAAAAARLSTERFVLYSAAPVGPLERYHARLRSGGXXXXXXXXXXXXXXXXQTRDDDRDVGTQTETARAADAEAQFHMGSDDTALENMLARARARXXXXXXXXXXHR-----------RQG------SDPGVTLTAXXXXXXXXTGEG--EGVYEHGDREAPGTVDAAEAEERAAQLRXXXXXXXXXGGARLAHFLRSVAPVVEALCVENIALSGGSAAL---AEAEARARDEGERDRAA--GRAFASEATTSWERLGAAXXXXXXXXXDDWAVEPWLRTALAGASAAALAYSAARPPLLAVAYARSAXXXXXXXXXXA----------------VCVWGARAAPLAGDTDASRPAAPLAAVLVAEGAPTCVCWGPAAAPHLCLAGAADGVVALWDLRTPCGGXXXXXXXERPA-CGLRRPTYATAPR--------SAAGGHASAVAXXXXXXXXXXXXXXXXXXXXXXG-LFRAAATAFASLDDRGVVIVWLAMDVT--DDGGSAQQQDLGLAPGGSVRLAHSRTVDTRALPLPPPPTASL-RQPRRSSRAAQETSVHSLCDTEGAVGGPAAA-CLCFFGRDSNRFLVGGXXXXAVLHCSRLGAQPVPRAYC-------------------GSGGXXXXXXXXXXXXXXXVLCLSASAFCPEYFLAGCADGSVRLHHQDSARPVAVWDGFAGMLGAARXXXXXXXXXXXXXXXXXXCVAVVDVRWSPHRAAVFYALDARGLLHVFDLLADDAGPLISERCCDAAAAASAEGKCGEGDDERCAQAACAC--------ALSAERLLAGAAPSVAVVGXXXXXXRLLSGWLQRSADT 973
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: A0A7S3XQJ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ7_HETAK) HSP 1 Score: 164 bits (415), Expect = 2.250e-38 Identity = 178/629 (28.30%), Postives = 256/629 (40.70%), Query Frame = 1
Query: 1090 RLRKFLLQACVVMETLCEENLSSAADRKSPKRSGQTEEDREEPGNKERSLFPGGAHAKDWEELGVNVYVASKGSPKSAAAGINILIDSSIVVGVAFSHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVA--ISHGQEAQKLGLK-CG---LHSPTYTTAGGGGGSAGFIDPAF-GHAYAIVSLVLIPT---SSEDDGAGSGDFGDISSLGESNSFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPA-AAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSD---------------LRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASEQCPTQGMGTRDAQEAVAAVTSSPPMLALSSNSLTTGSQPRVTLVVHGRIFTRSLSRRMCRPA 2898
RL F+ A V E +CE+N EED E +++ LF A W+ LG S SP SA I ++ + G+ FS + +M +++ + D+ D K + G +CVW+ + E P + C + LFQ H+++ GT +G +LLWDLRE ++ G QK C + SPTYT+A + P H+ +V + IP S G SFQ+A+LDDR +++W+VTE ++++ GGS + LGLS G+ R+ LS++L D N+ + S S +A A S P A +LAF +DPNRF+ + + I +R G+ P P F AP + F A V CL FSPF YFLAGC +GSVRLY P+ W G R + SV WS HRP VF+AL + FDLL D P+ E+ + + + A P L LSS+ + G +PR+ L I R L M RP+
Sbjct: 128 RLSTFIQAASQVCEAVCEKNFEQYKKH--------FEEDSES--KEDQGLF---TSASKWKILGQGGRRLSNTSP-SARENIGSVLAQRELTGLVFSTLQPNMACSSYMLRSKE--YFNEDETDDLKDY--------GLICVWDT-LNPEKPSRLGICRVGVSCCAMGLFQTHLVMAGTTDGQVLLWDLRENKREILAQGDPIQKTANSLCSEGVIRSPTYTSAS--------LGPHIKSHSSKVVDITPIPVEILSKPHQGPSQA------------SFQIATLDDRGVLALWLVTELEKVELGGS-SDLGLSINGQTRLVLSRTLSLDPSIEDLNPNKQK----STSGRRTAKTEADASLTPGPCAQSLAFYPKDPNRFIATLSDGSIMQHTRFGNCPPPHHFRAP-ITFGSFENAPVP-----------------------VLCLDFSPFLPDYFLAGCMDGSVRLYTIAEQFPILHWVGDCLRGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVTSVRWSAHRPGVFYALTRDTEACAFDLLRDQAGPLHWERYEAF-VSSEEKMRGDA------PRLGLSSDKVKVG-RPRLALTGGSTIAFRELGVSMTRPS 674
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: UPI001AAC4E69 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC4E69) HSP 1 Score: 143 bits (360), Expect = 4.720e-31 Identity = 139/545 (25.50%), Postives = 217/545 (39.82%), Query Frame = 1
Query: 1087 QRLRKFLLQACVVMETLCEENLSSAADRKSPKRSGQTEEDREEPGNKERSLFPGGAHAKDWEELGVNVYVASKGSPKSAAAGINILIDSSIVVGVAFSHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDISSLGESNS---FQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASE 2712
QRL FL A VM L EEN S R +K S P + ++D L N+ + V + FS A+R +L++ H++ S+K +A L +CVWN +P N+L E KC C + + ++ GT +G +L+WDLRE ++ + + S T++T G + H + + S+ +PT+ + S +SS GE S FQ+ASLD+ + WVV E +++D GSQ+ LGL PGG++++ S S+ + +F P T F P +D N F++ + H +R G + P + + +L +K V+ + FSPF FLAGC +G +RL+ P+ W ND G SI ++ WS RP +FFALD ++H +DLL++D+ PIA E
Sbjct: 548 QRLTGFLRSAAQVMAVLLEENRSEYQSR-----------------SKVHSKEPCMSISEDCFHLNTNLP----------------FLQGRKVYHLQFSEAQRHLLLSVHSQ--------------SNKSISA-FLSDQYLICVWNI-WQPSSPQNILMCESEVKCCCFSPGKASLVFAGTVDGSVLVWDLREDFSMHQTLTIEDVTWT--FRSVTFSTDG--------VFSYVNHTHQVKSIEPVPTAEAKEPGISA----LSSQGEEVSGLSFQLASLDENGYLIFWVVVELRKVDLAGSQSDLGLIPGGKVKLVHSSSINLIDKFFHKDVLTLGSPE-----------TMNIKFLP----------QDSNHFVIGTDIGIVTHGTRYGLIEPPVQYSS-----LYSKLRPSK-----------------------VTAIDFSPFAMPAFLAGCTDGCIRLHTMSAEYPVMQW-----------------NDTTGG-------QSIIALQWSLTRPTMFFALDAASSIHIWDLLQNDLQPIAKE 956
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: UPI001301E3A4 (WD repeat-containing protein 60 isoform X3 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=UPI001301E3A4) HSP 1 Score: 138 bits (348), Expect = 3.990e-30 Identity = 118/450 (26.22%), Postives = 191/450 (42.44%), Query Frame = 1
Query: 1378 SHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAG-----GGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDISSLGESNSFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASE 2712
S +R LV+ H P +K F+ +L+ +CVW+ +P VL E C C + F+ ++ GT G ++LWDLRE + H + + + T++T G I+P Y + VL P S++++ IS L SF +ASLD+ ++IWVV E + D GSQ+ LGL PGG+I++ S +++ + F P+++ TS P + F DPNRF++ I+H +R +P+ F + EER + V+ + FSPF FLAGC +GS+RL++ + P+ W ND G ++ ++ W++ RPAVF D I ++ +DLLE+D+ P+A +
Sbjct: 251 SQIQRQTLVSVHELP--------------EKPFS-DILDKRYILCVWDI-WQPSSPQKVLICESKVMCCCFSPFKAILLFAGTIHGSVVLWDLREDSRMHHYVKLKDCAWT--FRTATFSTDGVLTAVNHRSPVQSIEPVSTSVYKKQNFVLSPFSNQEE---------ISGL----SFHIASLDENGILNIWVVVELSKADFAGSQSDLGLIPGGKIKLVHSSTIQLNSSFP---------PKVN------------TSLKPMQTLIVKFLPSDPNRFIIGTDMGVISHGARHDSKVSPKLF---------------------------KPQQREERPVK-VTVIDFSPFGDPMFLAGCSDGSIRLHQLNSEYPICQW-----------------NDTTNG-------RAVIALKWTQTRPAVFLVQDDISNIYVWDLLENDLGPVAKQ 596
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: A0A6P9ARF4_PANGU (WD repeat-containing protein 60 isoform X1 n=16 Tax=Colubroidea TaxID=34989 RepID=A0A6P9ARF4_PANGU) HSP 1 Score: 139 bits (351), Expect = 6.140e-30 Identity = 114/448 (25.45%), Postives = 193/448 (43.08%), Query Frame = 1
Query: 1378 SHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTSS-EDDGAGSGDFGDISSLGE--SNSFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASE 2712
S A+R L++ H P T +D+ D K+ +CVWN +P +L E C C + + ++ GT +G +L+WDLRE + + + SPT++T G + + HA ++++ + TS ++ G F +S E SFQ+AS+D+ T+S+WVV E ++ D GSQ LGL PGG+I++ S +++ +C+ + + L + + F +PN F+V ++H +R +L P + P+ GG R V+ + FSPF + FL GC +GS+RL++ +PL W +A ++ S+ W+ RPAVFF LD ++ +DLLE+D++P+A +
Sbjct: 672 SQAQRQALLSVHGLPE------TSNDLSLDSKY---------IICVWNV-WQPSSPQKLLLCESQVTCCCFSPCKATLVFAGTVDGSVLVWDLREDSRMHQCVKVNETDWT--FRSPTFSTDG--------VFTSINHACTVLTIEPVSTSVFKEQNCG---FSYLSVQEEMLGLSFQIASMDENGTLSLWVVVELQKGDLSGSQNDLGLIPGGKIKLVHSSTVQL-----NCSISPKDYTFLGVPQTLN----------------IKFLPSNPNHFVVGTDAGLVSHGTR-HELKVPPKWFKPQQ-----------------GGPRATQ----------VNAIDFSPFGKPIFLVGCSDGSIRLHQMASELPLMQWNNSTA------------------------GQAVISLQWALTRPAVFFVLDATSVIYIWDLLENDLSPVAKQ 1017
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: G3WJI9_SARHA (Dynein 2 intermediate chain 1 n=2 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WJI9_SARHA) HSP 1 Score: 138 bits (348), Expect = 1.400e-29 Identity = 118/450 (26.22%), Postives = 191/450 (42.44%), Query Frame = 1
Query: 1378 SHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAG-----GGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDISSLGESNSFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASE 2712
S +R LV+ H P +K F+ +L+ +CVW+ +P VL E C C + F+ ++ GT G ++LWDLRE + H + + + T++T G I+P Y + VL P S++++ IS L SF +ASLD+ ++IWVV E + D GSQ+ LGL PGG+I++ S +++ + F P+++ TS P + F DPNRF++ I+H +R +P+ F + EER + V+ + FSPF FLAGC +GS+RL++ + P+ W ND G ++ ++ W++ RPAVF D I ++ +DLLE+D+ P+A +
Sbjct: 670 SQIQRQTLVSVHELP--------------EKPFS-DILDKRYILCVWDI-WQPSSPQKVLICESKVMCCCFSPFKAILLFAGTIHGSVVLWDLREDSRMHHYVKLKDCAWT--FRTATFSTDGVLTAVNHRSPVQSIEPVSTSVYKKQNFVLSPFSNQEE---------ISGL----SFHIASLDENGILNIWVVVELSKADFAGSQSDLGLIPGGKIKLVHSSTIQLNSSFP---------PKVN------------TSLKPMQTLIVKFLPSDPNRFIIGTDMGVISHGARHDSKVSPKLF---------------------------KPQQREERPVK-VTVIDFSPFGDPMFLAGCSDGSIRLHQLNSEYPICQW-----------------NDTTNG-------RAVIALKWTQTRPAVFLVQDDISNIYVWDLLENDLGPVAKQ 1015
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: UPI0005298AE3 (WD repeat-containing protein 60 n=1 Tax=Colius striatus TaxID=57412 RepID=UPI0005298AE3) HSP 1 Score: 137 bits (345), Expect = 3.000e-29 Identity = 126/467 (26.98%), Postives = 191/467 (40.90%), Query Frame = 1
Query: 1375 FSHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDIS-SLGESNS---FQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIR------MTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVS--CLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASEQCPTQGMGT 2739
FS +R L++ H P +K + +L +CVWN +P VL + C C + + ++ GT +G LL+WDLRE + H Q G+ PT++T G I + H I+++ + TS D ++G +S S E S FQ+AS+D+ T+++WVV E +++D GSQT LGL PGG+++ M LS SL P R P+ + F DPN F+V + H +R G P+ F R +E L +S + F PF + FL GC +GS+RLY+ PL W ND G I ++ W+ RPAVFF LD ++ +DLLE+D+ P+A + P++ + T
Sbjct: 615 FSQVQRQTLLSVHGLP---------------EKASVGLLNRKSIICVWNI-WQPSSPQKVLICDSEVICCCFSPNKTTLVFAGTTDGSLLVWDLREDSRM-HLQMMIN-GIDWTFRVPTFSTDG--------ILLSVNHTSPILAVEPVSTSLYTDK----NYGLLSLSYQEEMSGPPFQIASMDENGTLNMWVVIELRKVDLAGSQTDLGLVPGGKVKLVHSSTMELSNSLFPKDV-------HQRMPQTL---------------------TIKFLSSDPNHFIVGTNIGLVGHGTRNGLKVLPKLF------------------------------RPQESRLRSISISAIDFFPFGKPLFLVGCSDGSIRLYQMTSEYPLMQW-----------------NDSTNG-------QPIIALQWALTRPAVFFVLDASSNIYIWDLLENDLLPVAKQTVPSENVVT 969
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: UPI001CF78EF1 (cytoplasmic dynein 2 intermediate chain 1 isoform X1 n=8 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF78EF1) HSP 1 Score: 137 bits (345), Expect = 3.190e-29 Identity = 113/451 (25.06%), Postives = 188/451 (41.69%), Query Frame = 1
Query: 1378 SHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTS-SEDDGAGSGDFGDISSLGESN-----SFQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIRMTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVSCLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASE 2712
S A+R L++ H P G +L+ +CVWN +P +LF E C C + + ++ GT +G +L+WDLRE + H + SPT++T G + + H ++++ + TS ++ G +S L S SFQ+AS+D+ T+S+WVV E ++ D GSQ+ LGL PGG+I++ S ++ F T P + + F +PN F+V ++H +R +L P + P+ GG+R V+ + FSPF + FL GC +GS+RL++ PL W ++ +I ++ W+ RPAVFF LD + ++ +DLLE+D++P+A +
Sbjct: 666 SQAQRQALLSVHGLPDTSG---------------HPVLDSKYIICVWNV-WQPSSPQKLLFCESQVTCCCFSPSKATLVFAGTVDGSVLVWDLREHARMHHCLKVNDTDWT--FRSPTFSTDG--------VFTSVNHTCPVLTVESVSTSVCKEQNCG------LSYLSSSEEMLGLSFQIASMDENGTLSLWVVVELQKGDLAGSQSDLGLIPGGKIKLVHSSKVQLNCSFSPKD----------------------TMMVPQTLN-IKFLPSNPNHFVVGTDVAVVSHGTR-HELKVPPRWFKPQQ-----------------GGSRSTR----------VNTIDFSPFGKPIFLVGCSDGSIRLHQITSEFPLMQWNNSTS------------------------GQAIVALQWALTRPAVFFVLDAMSVVYIWDLLENDLSPVAKQ 1009
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Match: A0A6J0HLB6_9PASS (WD repeat-containing protein 60 n=12 Tax=Passeriformes TaxID=9126 RepID=A0A6J0HLB6_9PASS) HSP 1 Score: 135 bits (340), Expect = 1.200e-28 Identity = 120/463 (25.92%), Postives = 186/463 (40.17%), Query Frame = 1
Query: 1378 SHAKRSMLVTAHARPAWHGVVLTGDDVDSDKKFAASMLEGCGFVCVWNPDTSKETPMNVLFGEGVFKCVCLTLFQPHVILVGTGEGCLLLWDLREPVAISHGQEAQKLGLKCGLHSPTYTTAGGGGGSAGFIDPAFGHAYAIVSLVLIPTSSEDDGAGSGDFGDISSLGESNS-----FQVASLDDRSTVSIWVVTESKRIDEGGSQTHLGLSPGGRIR------MTLSKSLRPVAEFGDCTANRARFPRLSFSSATSAGATAATSFAPAAAHALAFSREDPNRFLVSGTCECIAHASRLGDLPTPRSFCAPRLPFWVDRLAAAKLGGNGAGGARVATSREEERGLGGVS--CLSFSPFFRRYFLAGCENGSVRLYKDDCAVPLNVWEGFSARDSDLRSNIREANDPACGGGFEGWSTSIASVAWSEHRPAVFFALDKIGTLHGFDLLEDDINPIASEQCPTQ 2727
S +R L++ H P GV +L +CVWN +P VL + C C + + ++ GT +G LL+WDLRE + G PT++T G I + H ++++ + TS + D + +G +SSL FQ+AS+D+ +++WVV E +++D GSQT LGL PGG+++ M L+ SL P R R P+ + F +PN F+V + H +R G P+ F R +E GL +S + F PF + FL GC +GS+RL++ P+ W ND G I ++ W+ RPAVFFALD ++ +DLLE+D+ P+A E P++
Sbjct: 621 SQVQRQTLLSVHGLPEKAGV---------------DLLNRKSLICVWNI-WQPSSPQKVLICDSEVMCCCFSPSKTTLVFAGTIDGSLLVWDLREDSRMH--PHTMMSGTDWTFRVPTFSTDG--------ILNSVNHTSPVLAVEPVSTSLDTDHS----YG-LSSLSYQEEVSGPPFQIASMDENGILNMWVVVELQKVDLAGSQTDLGLVPGGKVKLVHSSAMELNNSLFPKDI-------RQRMPQTL---------------------TIKFLSSNPNHFIVGTNIGLVGHGTRHGLKVVPKLF------------------------------RPQESGLRSISITAIDFFPFGKPLFLVGCSDGSIRLHQMTSEYPVMQW-----------------NDSTNG-------QPIIALQWALTRPAVFFALDASSNIYIWDLLENDLLPVAKETIPSE 970 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11490.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11490.1191.1 >prot_H-elongata_contig11490.1191.1 ID=prot_H-elongata_contig11490.1191.1|Name=mRNA_H-elongata_contig11490.1191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=968bp MEGDGYEDEGFEEYSDEFESGEADNENQPSMAVLSRATPHGETREADGARback to top mRNA from alignment at H-elongata_contig11490:1386..8695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11490.1191.1 ID=mRNA_H-elongata_contig11490.1191.1|Name=mRNA_H-elongata_contig11490.1191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7310bp|location=Sequence derived from alignment at H-elongata_contig11490:1386..8695- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11490:1386..8695- >mRNA_H-elongata_contig11490.1191.1 ID=mRNA_H-elongata_contig11490.1191.1|Name=mRNA_H-elongata_contig11490.1191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5808bp|location=Sequence derived from alignment at H-elongata_contig11490:1386..8695- (Himanthalia elongata Himel1 dioecious)back to top |