prot_H-elongata_contig4759.11893.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig4759.11893.1
Unique Name	prot_H-elongata_contig4759.11893.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	191

Homology

[Close]

BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.140e-38
Identity = 96/181 (53.04%), Postives = 119/181 (65.75%), Query Frame = 0

Query:   10 MFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKLSAVKMHQLSQMNIANFDHQKMIMARIRELPDIPSMTKYGLREVDSCKVEAAVHVKPQSRRQGSICSFSQDSESYGGQSHESSSTGEKPQNSCGRAAVPILCANQGPRGSRAGGGRRRSIQHGDGGKKGRWRASQAGERNWDAINKA 190
            MFLRGCREPLEQY ECLMKNLKDW G RG+ R KLSAVK+HQL QMNI  FDHQK+IM RIR L DIPSM +Y + + +  +VEAAVHV P  RR+GS  +    +      S +S S+G   +N+    A       +G + S+ G  RRRS +HG G K GR R S A ++ W+AINK+
Sbjct:    1 MFLRGCREPLEQYRECLMKNLKDWHG-RGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAP--RRKGSSSNTGSSNNVNRVLSGDSVSSGSLAENASQSDASMSEDTGEGGKKSK-GHHRRRSTRHGLGVKGGR-RGSLAIDKTWEAINKS 176

[Close]

BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.040e-12
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 0

Query:    1 METDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGS-RGVQRAKLSAVKMHQLSQMNIANFDHQKMIMARIRELPDIPSM 79
            M  D++DVR FL+     LEQY EC M NL  W G  RG+ R KL+ V+MH L  MNI   DHQK+IMAR++EL  IP++
Sbjct:    1 MSDDLIDVRTFLKPTG--LEQYRECFMTNL--WGGDGRGLSRRKLAQVQMHHLPDMNITRHDHQKIIMARLKELDRIPAV 76

[Close]

BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: A0A6H5JUX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 9.410e-11
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0

Query:    3 TDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKL 44
            TD+VD  MFLRGCREP+EQY ECLMKNLKDW G    +R  L
Sbjct:    7 TDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGRLDTKRTTL 48

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot

BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G3E1_ECTSI	5.140e-38	53.04	Similar to camp and camp-inhibited cgmp 3,5-cyclic...	[more]
A0A835ZCA7_9STRA	5.040e-12	52.50	SAM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A6H5JUX4_9PHAE	9.410e-11	69.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 2..79 e-value: 5.7E-6 score: 28.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig4759	contig	H-elongata_contig4759:8967..10578 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig4759.11893.1	mRNA_H-elongata_contig4759.11893.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig4759 8967..10578 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig4759.11893.1 ID=prot_H-elongata_contig4759.11893.1|Name=mRNA_H-elongata_contig4759.11893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
METDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKLSAVKMH
QLSQMNIANFDHQKMIMARIRELPDIPSMTKYGLREVDSCKVEAAVHVKP
QSRRQGSICSFSQDSESYGGQSHESSSTGEKPQNSCGRAAVPILCANQGP
RGSRAGGGRRRSIQHGDGGKKGRWRASQAGERNWDAINKAG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013761	SAM/pointed_sf