prot_H-elongata_contig47585.11886.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47585.11886.1
Unique Nameprot_H-elongata_contig47585.11886.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length177
Homology
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.170e-80
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 0 
Query:    1 IPGSELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEKGMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRALRRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMARADSLPGDRKVRV 177
            +PGS+L+GGRV QLL+FCL RL+ES+D+EED ELLMTAAQAC+RCV++ACVRWE H +GM+DP  PRP  CRRVLN+ QSR LARAALGCLG+SLRRRALRRAEATAS+DWD+        AG+EEVELHVNLAELLG LFKTHG  F PAFEELLLPS+LEMAR DSLP DRKV V
Sbjct:  913 MPGSDLQGGRVRQLLEFCLGRLVESLDKEEDAELLMTAAQACKRCVYYACVRWEVHTEGMDDPADPRPSTCRRVLNEDQSRVLARAALGCLGQSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFEELLLPSVLEMARPDSLPEDRKVAV 1089
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: A0A836CCE4_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.140e-31
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 0 
Query:    2 PG-SELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEKGMEDPVPPRPGDCR--RVLNDGQSRALARAALGCLGKSLRRRALRRAEATASK--DWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMA--RADSLPGD 172
            PG  + + G +  LL+FCL +LL+S+  E D  ++MTAAQA R+C+  AC RW+ H   +  P PP P      ++L+  Q  ALA A L  L +S +RRA+RRAEA A +  +WD+E    A+    EE EL  N+AEL+G L KTHG+ FLP+  +  LP+LL+MA    DS  GD
Sbjct:  743 PGYGQGDRGALVMLLEFCLGKLLDSLQTEPDAVMVMTAAQAMRQCIEHACCRWDLHLAAVVAPSPPSPTPATSLQLLSAPQMDALAAACLQVLARSAQRRAVRRAEAAAEETGEWDEEAAAAAQEGEAEETELLHNVAELIGALLKTHGSAFLPSLAQQALPTLLDMAGQAQDSPEGD 920
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: A0A812VLD6_SYMMI (Sal3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLD6_SYMMI)

HSP 1 Score: 82.8 bits (203), Expect = 7.010e-16
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 0 
Query:   14 LLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEK-GMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRALRRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMARADSLPGDRK 174
            L ++ +  +++S++ E   EL+MT  Q+ R+   + C  WE        +P  P+P      L++   RAL   A   L  SL+RRA+ RAEA  + + D+++ +       E +ELH N+AEL+G +F+THG  FL  ++E+   +   +A  + L  DR+
Sbjct:   41 LTEYVIGVVIKSVETEGTLELIMTGLQSLRQMFVYMCTNWEALRPFTTTEPPKPQPDSSIPFLSERHMRALTECATVVLRDSLQRRAVLRAEAQVAGNVDEDDAEDEEQFQLESMELHYNIAELMGTIFRTHGARFLGVYQEVWHEATCTLAHKNCLKEDRQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0F5_ECTSI1.170e-8075.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCE4_9STRA1.140e-3144.38Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A812VLD6_SYMMI7.010e-1631.48Sal3 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 3..177
e-value: 4.5E-15
score: 56.8
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47585contigH-elongata_contig47585:1678..3764 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47585.11886.1mRNA_H-elongata_contig47585.11886.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47585 1678..3764 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47585.11886.1 ID=prot_H-elongata_contig47585.11886.1|Name=mRNA_H-elongata_contig47585.11886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
IPGSELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFAC
VRWERHEKGMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRAL
RRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLP
AFEELLLPSLLEMARADSLPGDRKVRV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold