mRNA_H-elongata_contig47585.11886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47585.11886.1
Unique NamemRNA_H-elongata_contig47585.11886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.170e-80
Identity = 133/177 (75.14%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 IPGSELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEKGMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRALRRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMARADSLPGDRKVRV 531
            +PGS+L+GGRV QLL+FCL RL+ES+D+EED ELLMTAAQAC+RCV++ACVRWE H +GM+DP  PRP  CRRVLN+ QSR LARAALGCLG+SLRRRALRRAEATAS+DWD+        AG+EEVELHVNLAELLG LFKTHG  F PAFEELLLPS+LEMAR DSLP DRKV V
Sbjct:  913 MPGSDLQGGRVRQLLEFCLGRLVESLDKEEDAELLMTAAQACKRCVYYACVRWEVHTEGMDDPADPRPSTCRRVLNEDQSRVLARAALGCLGQSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFEELLLPSVLEMARPDSLPEDRKVAV 1089
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: A0A836CCE4_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.140e-31
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 1 
Query:    4 PG-SELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEKGMEDPVPPRPGDCR--RVLNDGQSRALARAALGCLGKSLRRRALRRAEATASK--DWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMA--RADSLPGD 516
            PG  + + G +  LL+FCL +LL+S+  E D  ++MTAAQA R+C+  AC RW+ H   +  P PP P      ++L+  Q  ALA A L  L +S +RRA+RRAEA A +  +WD+E    A+    EE EL  N+AEL+G L KTHG+ FLP+  +  LP+LL+MA    DS  GD
Sbjct:  743 PGYGQGDRGALVMLLEFCLGKLLDSLQTEPDAVMVMTAAQAMRQCIEHACCRWDLHLAAVVAPSPPSPTPATSLQLLSAPQMDALAAACLQVLARSAQRRAVRRAEAAAEETGEWDEEAAAAAQEGEAEETELLHNVAELIGALLKTHGSAFLPSLAQQALPTLLDMAGQAQDSPEGD 920
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BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Match: A0A812VLD6_SYMMI (Sal3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLD6_SYMMI)

HSP 1 Score: 82.8 bits (203), Expect = 7.010e-16
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = 1 
Query:   40 LLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFACVRWERHEK-GMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRALRRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLPAFEELLLPSLLEMARADSLPGDRK 522
            L ++ +  +++S++ E   EL+MT  Q+ R+   + C  WE        +P  P+P      L++   RAL   A   L  SL+RRA+ RAEA  + + D+++ +       E +ELH N+AEL+G +F+THG  FL  ++E+   +   +A  + L  DR+
Sbjct:   41 LTEYVIGVVIKSVETEGTLELIMTGLQSLRQMFVYMCTNWEALRPFTTTEPPKPQPDSSIPFLSERHMRALTECATVVLRDSLQRRAVLRAEAQVAGNVDEDDAEDEEQFQLESMELHYNIAELMGTIFRTHGARFLGVYQEVWHEATCTLAHKNCLKEDRQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47585.11886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0F5_ECTSI1.170e-8075.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCE4_9STRA1.140e-3144.38Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A812VLD6_SYMMI7.010e-1631.48Sal3 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47585contigH-elongata_contig47585:1678..3764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue4.6e-70
Seed eggNOG ortholog2880.D7G0F5
Preferred nameIPO5
KEGG koko:K20222
KEGG TC1.I.1
GOsGO:0000060,GO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042277,GO:0042306,GO:0042307,GO:0042886,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090316,GO:1900180,GO:1900182,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-02_000610.1
Exons3
Model size531
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47585.11886.1prot_H-elongata_contig47585.11886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47585 1678..3764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.8538413-CDS-H-elongata_contig47585:1677..18411622930785.8538413-CDS-H-elongata_contig47585:1677..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 1678..1841 -
1691679569.4183738-CDS-H-elongata_contig47585:1677..18411691679569.4183738-CDS-H-elongata_contig47585:1677..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 1678..1841 -
1622930785.8694837-CDS-H-elongata_contig47585:2378..25701622930785.8694837-CDS-H-elongata_contig47585:2378..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 2379..2570 -
1691679569.429881-CDS-H-elongata_contig47585:2378..25701691679569.429881-CDS-H-elongata_contig47585:2378..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 2379..2570 -
1622930785.8818111-CDS-H-elongata_contig47585:3589..37641622930785.8818111-CDS-H-elongata_contig47585:3589..3764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 3590..3764 -
1691679569.4420044-CDS-H-elongata_contig47585:3589..37641691679569.4420044-CDS-H-elongata_contig47585:3589..3764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47585 3590..3764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47585.11886.1

>prot_H-elongata_contig47585.11886.1 ID=prot_H-elongata_contig47585.11886.1|Name=mRNA_H-elongata_contig47585.11886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
IPGSELEGGRVHQLLQFCLCRLLESMDREEDPELLMTAAQACRRCVHFAC
VRWERHEKGMEDPVPPRPGDCRRVLNDGQSRALARAALGCLGKSLRRRAL
RRAEATASKDWDDEEEDRARVAGDEEVELHVNLAELLGCLFKTHGNDFLP
AFEELLLPSLLEMARADSLPGDRKVRV
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mRNA from alignment at H-elongata_contig47585:1678..3764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47585.11886.1 ID=mRNA_H-elongata_contig47585.11886.1|Name=mRNA_H-elongata_contig47585.11886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2087bp|location=Sequence derived from alignment at H-elongata_contig47585:1678..3764- (Himanthalia elongata Himel1 dioecious)
ATCCCAGGGTCTGAGCTAGAGGGAGGGAGGGTACATCAGCTTCTGCAGTT
CTGCCTTTGCAGGCTGCTGGAATCTATGGACAGGGAGGAGGATCCGGAGC
TTCTAATGACAGCGGCACAGGCGTGTAGGCGCTGCGTGCACTTTGCCTGC
GTACGGTGGGAGCGTCATGAAAAAGGTTATAGGTTATACATTATACATTA
ATTCACAGTATATTTTGTCCTCAAAAGGTTATATACATTAATTCACAGTA
TATTTTTATTACTTCTCAAAACCTGATCATAGTTGGTCATAGTCCCCTGG
ACTGCTCCCTCTCACGGTGTGCTAAGAAGGCGTGTGGATGTTCGGAGCTT
TGGAATCAGTTTGTATGTATAGTAGTTATATACGGGGTTCGTGTAAAATA
ACAAATCGGGCGATTATACTGTAAATCGTTTTTTTTTTAAATTTAACTTA
GATTTGATTTCGTTAATTTTTGAAACTTTGGTCAAAATGTACCGCAGTCT
CCGATATTTTACGAGTACCGTACTGTATCGCAACGTCCACTGGGGTTTCA
TTAAAAAAGAGGCGTATATTGCTTGGTCCATAGGTTACATGAATAGGCTG
TGCCCGTTACTCAAGCTACCTTGAGGACTGCTGGCTTATTGCCGGCAGAC
TTTCTTTGGTGAACGCCCGGTACGCAATTGCATGGCTTGTTGACGATATA
AATTTCACACCGTCGCGGAAAGTGCGAGGAATCCTAAGGGTAAACACAGA
TCCGGCCTGGGTGAAGATGATAAGCACGCTGACGCGGGACAGGACGGCCG
AACCCCTCTCGCGAGACCAAATTCTAAGGCGCGGATGGTTACAGAGAAGA
TTAATTTTTCCTTTTTATCAATTTTGCATTAAACCGCGCAAACCGGCAAG
ACACGTAAGGGGGCGCCACGCCGGTTTACAAATAACCCCCCCTTATGGGG
AGCTATCCCTGGGGACGCTGGATCCGCCTATCCTATTCGCGTTGCTTGTT
CAGCTCACCATTTACAAGGATTGGCAACCAAATCCGGTTTACCCACACTA
AAGCCTATATATATATGTGATGACGTCATACATGCACAAGCAACACAAAA
CAATTGGATGTCGTATAAATGCGGTAATGCGATATATTCAAAACAATTTT
CAGGCACCAACCAATGTACGTGCTACAACGCGCATTCATGTCAGGGATGG
AAGACCCTGTGCCCCCAAGACCGGGCGACTGCCGACGGGTGCTCAACGAT
GGTCAGTCCCGAGCACTGGCCCGAGCGGCCTTAGGGTGTCTGGGCAAGAG
CTTGAGGCGGCGTGCGTTAAGAAGGGCAGAGGCGACGGCGAGCAAGGACT
GGGATGACGAGGAGGAAGACAGAGCGAGGGTCGCGGGTTAGTGTTGTGTT
GTGTGTTATATATAGGCTGGTAGCCCCACGGCGCTCTTGAGATTCTCTCA
TTAAATCGAATGCACTGGTGCGCGCCCTGGTGGTTCAGTCGGTAAACCTC
GAAACCCTTGTGACGCGTGAGTTCGAATCGACACACACACACACACACAA
AGCAGATGGAAACTCACACTCCATGGAATCGACCATCGATCATCGATCAT
GCAGGAACGATGCTCTTTTCTCGCGAGGCGTCCCTATGGCAGGTTTTTGA
CAGTGCGTCAAAGCGTCTTTTTGGAAAATATACTAGTTTTAGTGTTGAGA
AGTGTTCTTGACGCAGCTGTCAAGGGGTTTTCACTGTTGTCAACCAACAA
TTTTACTCTTGAAACGGGGAAGAGGCCGAATCCAAATAATCATTATATAT
CTTCTGTAAGAACAACAGCCACGGTGGCATTTACGTGTCATTGTTCGGTT
TCTGTTGCCGCTGTTCCCCCTTGTCTCCTTGTCTCTCGTCCCACCACCCC
AACTGTTGGCGTATGTCCTTTAGGAGACGAGGAAGTTGAGCTCCACGTGA
ACCTGGCAGAGCTGCTGGGGTGCTTATTCAAGACGCACGGGAATGACTTC
TTGCCTGCGTTCGAAGAGCTGCTACTTCCCAGCCTGCTCGAGATGGCCCG
TGCGGATAGTCTGCCGGGTGACCGGAAGGTGCGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig47585:1678..3764-

>mRNA_H-elongata_contig47585.11886.1 ID=mRNA_H-elongata_contig47585.11886.1|Name=mRNA_H-elongata_contig47585.11886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig47585:1678..3764- (Himanthalia elongata Himel1 dioecious)
ATCCCAGGGTCTGAGCTAGAGGGAGGGAGGGTACATCAGCTTCTGCAGTT
CTGCCTTTGCAGGCTGCTGGAATCTATGGACAGGGAGGAGGATCCGGAGC
TTCTAATGACAGCGGCACAGGCGTGTAGGCGCTGCGTGCACTTTGCCTGC
GTACGGTGGGAGCGTCATGAAAAAGATCCCAGGGTCTGAGCTAGAGGGAG
GGAGGGTACATCAGCTTCTGCAGTTCTGCCTTTGCAGGCTGCTGGAATCT
ATGGACAGGGAGGAGGATCCGGAGCTTCTAATGACAGCGGCACAGGCGTG
TAGGCGCTGCGTGCACTTTGCCTGCGTACGGTGGGAGCGTCATGAAAAAG
GGATGGAAGACCCTGTGCCCCCAAGACCGGGCGACTGCCGACGGGTGCTC
AACGATGGTCAGTCCCGAGCACTGGCCCGAGCGGCCTTAGGGTGTCTGGG
CAAGAGCTTGAGGCGGCGTGCGTTAAGAAGGGCAGAGGCGACGGCGAGCA
AGGACTGGGATGACGAGGAGGAAGACAGAGCGAGGGTCGCGGGGATGGAA
GACCCTGTGCCCCCAAGACCGGGCGACTGCCGACGGGTGCTCAACGATGG
TCAGTCCCGAGCACTGGCCCGAGCGGCCTTAGGGTGTCTGGGCAAGAGCT
TGAGGCGGCGTGCGTTAAGAAGGGCAGAGGCGACGGCGAGCAAGGACTGG
GATGACGAGGAGGAAGACAGAGCGAGGGTCGCGGGAGACGAGGAAGTTGA
GCTCCACGTGAACCTGGCAGAGCTGCTGGGGTGCTTATTCAAGACGCACG
GGAATGACTTCTTGCCTGCGTTCGAAGAGCTGCTACTTCCCAGCCTGCTC
GAGATGGCCCGTGCGGATAGTCTGCCGGGTGACCGGAAGGTGCGTGTGGA
GACGAGGAAGTTGAGCTCCACGTGAACCTGGCAGAGCTGCTGGGGTGCTT
ATTCAAGACGCACGGGAATGACTTCTTGCCTGCGTTCGAAGAGCTGCTAC
TTCCCAGCCTGCTCGAGATGGCCCGTGCGGATAGTCTGCCGGGTGACCGG
AAGGTGCGTGTG
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