mRNA_H-elongata_contig114862.1188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114862.1188.1
Unique NamemRNA_H-elongata_contig114862.1188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 9.630e-80
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 1
Query:    1 RYLESSSAEDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFS---GCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
            +YLESSSAE +T+ M SAV QGLKAA   G K+A + AEDAKGLLRMDL+GG+AG + S   GCSWM+V GGD+ELTEEG+AQGASEFGT ++VGVALRKK WY EV LLTAGLMQIGWADHTFV GGPESGDGIGDV GSWAYDG R+QRWNE QSDYGEAWKV
Sbjct:  275 KYLESSSAEPMTQAMPSAVEQGLKAAARAGAKKAADHAEDAKGLLRMDLQGGQAGEKKSSSPGCSWMEVAGGDVELTEEGQAQGASEFGTARVVGVALRKKTWYFEVALLTAGLMQIGWADHTFVAGGPESGDGIGDVSGSWAYDGVRQQRWNEGQSDYGEAWKV 439          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2STZ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STZ1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.530e-32
Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   25 EDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
            E V   ++ AV QG+K       ++  E++ + + +L +DL G   G  +    W+ +  G++E    G  +G SEFG+   +GV+L++ KWY EV L ++G+MQ+GWADH F  G  E+GDG+GD K SWAYDG R+Q+WN D +DYG AW  
Sbjct:   58 EAVADALNQAVLQGMKREAAVKKRKKEEKSVEQRKMLPVDLEGKMRGVRWGQEGWLGLLAGEIEFGGGGVVRGVSEFGSVCALGVSLKEGKWYYEVELRSSGVMQVGWADHLF-KGDSENGDGVGDDKHSWAYDGCRQQKWNGDGADYGLAWDT 210          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2SSZ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSZ0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.570e-31
Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   25 EDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
            E V   ++ AV QG+K       ++  E++ + + +L +DL G   G  +    W+ +  G++E    G  +G SEFG+   +GV+L++ KWY EV L ++G+MQ+GWADH F  G  E+GDG+GD K SWAYDG R+Q+WN D +DYG AW  
Sbjct:  305 EAVADALNQAVLQGMKREAAVKKRKKEEKSVEQRKMLPVDLEGKMRGVRWGQEGWLGLLAGEIEFGGGGVVRGVSEFGSVCALGVSLKEGKWYYEVELRSSGVMQVGWADHLF-KGDSENGDGVGDDKHSWAYDGCRQQKWNGDGADYGLAWDT 457          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S1C952_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C952_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.000e-28
Identity = 69/170 (40.59%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   25 EDVTRD-MSSAVSQGLKAAXXXGFKRAVEQAEDA---KGLLRMDLRGGEAGNEFSGCSWMDVCGGD----MELTEEGRAQGA--------SEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
            E+V+ D M++AV QGL  A   G KR     +D+   +  L +D+ G  AG  + G  W+   GGD    + +  EG   GA        +EFG+ ++VG+A+   ++Y EV LLT GL+Q+GWAD  FV G    GDG+GD + SW+YDGAR+  W+ D +DYG  WK 
Sbjct:   52 EEVSSDAMAAAVRQGLGRAQAKGLKRRRGGEDDSDLGREFLPIDVSGQRAGLRWDGGHWLASVGGDGDVNVTMAPEGGGGGARFAEVDGRAEFGSARVVGLAVTAGRYYYEVELLTGGLLQVGWADGLFV-GNAGVGDGVGDHEHSWSYDGARQLSWSGDSADYGARWKA 220          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2CQD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQD4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.890e-28
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  151 GGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWN-EDQSDYGEAWKV 486
            GG+AG      SW+ +  G+++  E G+ +G S+FG+   +GVAL + +WY E  LLTAG+MQ+GWA+H F  G   +GDG+GD   SWAYDG R+Q+WN  + +D+G AW  
Sbjct:    9 GGQAG------SWLGLLAGEVQFKEGGKVEGVSDFGSVCALGVALNEGRWYYEAELLTAGVMQVGWANHLF-RGDSSNGDGVGDDTNSWAYDGCRQQKWNGPEPADFGLAWSA 114          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: W4GHS0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GHS0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.540e-17
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  184 SWMDVCGGDMELT-----EEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSD-YGEAWKV 486
            SW+    G++ +      E    +G   FGT  + G AL + KWY EV LL+AG++Q+GWAD TF     + GDG+GD   SWAYDG R+ +W   +S  YG  W  
Sbjct:  309 SWLVPLNGNVHVKQSTAEENATVEGRGSFGTATVFGCALHRGKWYYEVELLSAGVIQVGWADATF-EADEDEGDGVGDHMASWAYDGCRQVKWTGGESAAYGAKWAA 414          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A8K1CUC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUC2_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 6.450e-17
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  238 QGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNED-QSDYGEAWK 483
            +G+  FGT  +    L   KWY EV L+T G++Q+GWADHTFV    E+GDG+GD   SWAYDG R+ +WN   + +YG AW+
Sbjct:  325 RGSGNFGTATMDECRLTSGKWYYEVKLITDGVIQLGWADHTFVANS-ETGDGVGDHARSWAYDGCRQLKWNAGKEEEYGVAWE 406          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S3YB49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB49_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-16
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  214 ELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAW 480
            +LT EG A G   F +    G  L   +WY EV LLTAG MQ+GWAD  ++ G  E+GDG+GD   SWAYDG R+ RW++   ++G  W
Sbjct:   13 DLTAEGVAAGG--FASVGCRGCLLDAGRWYFEVRLLTAGCMQLGWADAGYL-GNAETGDGVGDGPHSWAYDGWRQYRWHDGHREWGARW 98          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A1V9YML9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YML9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.050e-16
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   61 QGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTE-----EGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSD-YGEAWKV 486
            + L+ A     ++   Q E A G  R+      AG      +W+    G++ +T+     +   +G   FGT  + G AL   +WY EV L TAG+MQ+GWAD TF     E GDG+GD   SWA+DG R+ +W   ++  YG AW  
Sbjct:  272 RALQQALSDQKQQLATQMEYAPGATRLASAVSTAG------AWLVPLHGNVVVTQATADADASVEGQGTFGTATVFGCALHSGRWYYEVQLGTAGVMQLGWADATFEADDDE-GDGVGDHAASWAFDGRRQLKWTAGEAAAYGAAWAA 412          
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A6H5JWE1_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWE1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.750e-16
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  190 MDVCGGD--MELTEEGRAQGASEFGTTKI--VGVALRKK--KWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
            + V GGD  +E+ E  R   +S F T ++  VGV LR    +WY EVTLLT GLMQ+GWA   F    P  G G+GD   SWA+DG R++RW    + YG+ W+ 
Sbjct:   18 LQVMGGDALVEVIEGNRVTASSHFPTIRLSHVGVGLRSTGGRWYYEVTLLTGGLMQLGWAGPLFQCS-PARGQGVGDHMHSWAFDGFRQKRWCVSSAPYGKRWRA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW6_ECTSI9.630e-8076.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2STZ1_9STRA5.530e-3241.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SSZ0_9STRA2.570e-3141.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1C952_9STRA2.000e-2840.59Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2CQD4_9STRA2.890e-2846.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
W4GHS0_9STRA3.540e-1741.12Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A8K1CUC2_PYTOL6.450e-1749.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3YB49_HETAK1.540e-1647.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9YML9_9STRA3.050e-1635.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6H5JWE1_9PHAE4.750e-1644.76B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114862contigH-elongata_contig114862:601..1769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1.3e-66
Seed eggNOG ortholog2880.D8LEW6
EggNOG free text desc.cell cycle
EggNOG OGsKOG2242@1,KOG2242@2759,KOG2827@1,KOG2827@2759
Ec32 ortholog descriptionSPRY domain
Ec32 orthologEc-21_005810.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114862.1188.1prot_H-elongata_contig114862.1188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114862 601..1769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.663347-CDS-H-elongata_contig114862:600..7591622929664.663347-CDS-H-elongata_contig114862:600..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 601..759 +
1691679110.935663-CDS-H-elongata_contig114862:600..7591691679110.935663-CDS-H-elongata_contig114862:600..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 601..759 +
1622929664.6810012-CDS-H-elongata_contig114862:1174..13241622929664.6810012-CDS-H-elongata_contig114862:1174..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 1175..1324 +
1691679110.9446669-CDS-H-elongata_contig114862:1174..13241691679110.9446669-CDS-H-elongata_contig114862:1174..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 1175..1324 +
1622929664.697771-CDS-H-elongata_contig114862:1592..17691622929664.697771-CDS-H-elongata_contig114862:1592..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 1593..1769 +
1691679110.9519196-CDS-H-elongata_contig114862:1592..17691691679110.9519196-CDS-H-elongata_contig114862:1592..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114862 1593..1769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114862.1188.1

>prot_H-elongata_contig114862.1188.1 ID=prot_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
RYLESSSAEDVTRDMSSAVSQGLKAAVKAGFKRAVEQAEDAKGLLRMDLR
GGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKW
YMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWN
EDQSDYGEAWKV
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mRNA from alignment at H-elongata_contig114862:601..1769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114862.1188.1 ID=mRNA_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig114862:601..1769+ (Himanthalia elongata Himel1 dioecious)
AGGTACCTCGAGAGCTCCTCTGCCGAGGACGTAACGCGAGACATGTCCTC AGCCGTGTCGCAGGGTCTTAAGGCGGCGGTGAAGGCGGGTTTCAAGAGGG CGGTGGAGCAGGCGGAAGACGCCAAAGGCCTGCTGAGGATGGATCTCCGG GGAGGAGAGGTGCGTGGCGGGACGGGAGAAATTTATTGACGCGGTATTGG CGCGTCGATGATAAAGGAGAAGAGGCGGGCTTGTAGTCTGTGTCAGCGTC CGTCCGAAGAAAGCGACTCGGGGCTACTATGAGCGGGACGGAACATATAT GTTCTTCGGTCGTGCTCATGAAAGGCGGACGAAGCCTTCCTACATCTCTC GCTGAAAATATCTCTTCCGTCAGGATAGAGGACGCGGTCGCTAGACATGA CCATACCTGCTAGACATGACCATACCAAGACAAACTACTAAGCCTTAAAA ATAAATAAATAGTTTATTGTATATGTAAGTGTGTATTTCATTATTGGGTT TTCTATCAAAAGGGACAGTTTTTCCCTCAATCGCAATAGAACTCGTTTTT TTCATTCGCTGTTTTTCGACGCAGGCCGGGAATGAATTTTCGGGGTGTTC GTGGATGGATGTTTGCGGCGGGGATATGGAGCTGACGGAGGAGGGACGGG CGCAGGGAGCGAGCGAGTTCGGGACGACCAAAATCGTGGGAGTAGCGCTG CGCAAAAAAAAGTGGTACATGGAGGTGCGCCATGGACACGCCTGCCAATC CGTACAAAACCTTCAACCTTCCACTCCCCCCGTGGGAGCGTTGAATTGTC TGTTACAGGGATTTTCAGTCCTCAGAAGAACATCCAAATGTCTCGGCAAT CGAAGAGGGCAGAAAGCGCTTCTCAATGATCTGGTGGGTCACCAAACACG CGTTCTTCTGTCGCTTGTCGCACCCTGCCCTGGCGTGAACTCGATGGAAC CGGATGGGCTGGGACGGGGTTGAACGGAACGGAACTCGGTAGGTGACACT CCTTACGGCCGGGTTGATGCAGATCGGTTGGGCTGACCACACGTTTGTCC CAGGGGGGCCAGAGTCTGGGGACGGCATCGGGGACGTCAAGGGATCGTGG GCATACGACGGGGCGCGGCGGCAGCGGTGGAACGAGGACCAGAGCGACTA TGGTGAAGCTTGGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig114862:601..1769+

>mRNA_H-elongata_contig114862.1188.1 ID=mRNA_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig114862:601..1769+ (Himanthalia elongata Himel1 dioecious)
AGGTACCTCGAGAGCTCCTCTGCCGAGGACGTAACGCGAGACATGTCCTC
AGCCGTGTCGCAGGGTCTTAAGGCGGCGGTGAAGGCGGGTTTCAAGAGGG
CGGTGGAGCAGGCGGAAGACGCCAAAGGCCTGCTGAGGATGGATCTCCGG
GGAGGAGAGAGGTACCTCGAGAGCTCCTCTGCCGAGGACGTAACGCGAGA
CATGTCCTCAGCCGTGTCGCAGGGTCTTAAGGCGGCGGTGAAGGCGGGTT
TCAAGAGGGCGGTGGAGCAGGCGGAAGACGCCAAAGGCCTGCTGAGGATG
GATCTCCGGGGAGGAGAGGCCGGGAATGAATTTTCGGGGTGTTCGTGGAT
GGATGTTTGCGGCGGGGATATGGAGCTGACGGAGGAGGGACGGGCGCAGG
GAGCGAGCGAGTTCGGGACGACCAAAATCGTGGGAGTAGCGCTGCGCAAA
AAAAAGTGGTACATGGAGGCCGGGAATGAATTTTCGGGGTGTTCGTGGAT
GGATGTTTGCGGCGGGGATATGGAGCTGACGGAGGAGGGACGGGCGCAGG
GAGCGAGCGAGTTCGGGACGACCAAAATCGTGGGAGTAGCGCTGCGCAAA
AAAAAGTGGTACATGGAGGTGACACTCCTTACGGCCGGGTTGATGCAGAT
CGGTTGGGCTGACCACACGTTTGTCCCAGGGGGGCCAGAGTCTGGGGACG
GCATCGGGGACGTCAAGGGATCGTGGGCATACGACGGGGCGCGGCGGCAG
CGGTGGAACGAGGACCAGAGCGACTATGGTGAAGCTTGGAAGGTGGTGAC
ACTCCTTACGGCCGGGTTGATGCAGATCGGTTGGGCTGACCACACGTTTG
TCCCAGGGGGGCCAGAGTCTGGGGACGGCATCGGGGACGTCAAGGGATCG
TGGGCATACGACGGGGCGCGGCGGCAGCGGTGGAACGAGGACCAGAGCGA
CTATGGTGAAGCTTGGAAGGTG
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