mRNA_H-elongata_contig11486.1187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11486.1187.1
Unique NamemRNA_H-elongata_contig11486.1187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.870e-37
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCN 306
            A++  NTI +CG++D+ F SEDKNGEGVYIGTSS QW +   D C GNVV  N+IST+GNECV+IKEGS+GN +E+N C++QLD  SGCY  RGD NT R N
Sbjct:  181 AQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGE-DTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYN 281          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.970e-36
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCN 306
            A I DN IQDCG+ DF + +  KNGEG+Y+GTSS QW D  PD C  N + GN I+ NGNECV+IKEGSTG  VEEN C+ QLDE+SGC+G RGD N  R N
Sbjct:  154 AVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDG-PDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYN 254          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.840e-35
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCN 306
            A+IF NTI +CGI+D+ FES D NG+GV IGTSS++W D   D+C  N+V GN+I T+ NECV++KEG+ GN +E+N+C NQLD NSGCY  RG+DN  R N
Sbjct:  142 AKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNN 243          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.160e-34
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCN 306
            A++  NTI +CG++D+ F S DKNGEGVYIGTSS QW +   D C  N+V GN IST+GNECV+IKEG++GN +E+NIC+ QLD  SGCY  RGD NT R N
Sbjct:  181 AQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGE-DTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYN 281          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.960e-34
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIR 300
            A++  NTI +CG++DF F S DKNGEGVYIGTSS QW +   D C  N+V GN IST+GNECV+IKEG++GN VE NIC++QLD  SGCY  RGD NT R
Sbjct:  181 AQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGE-DTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.160e-27
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWV-----DETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCNDI 312
            AE++ N I DCGIYDF  + + KNGEGVY+GTSS QW      D+ PD+C GN+++GN I T GNE +++KEG+    +E N    Q D++SG  G RGD + IR N I
Sbjct:  181 AEVYSNHITDCGIYDFREDGDGKNGEGVYVGTSSKQWDSDKNWDDVPDVCMGNIIRGNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHI 289          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 110 bits (275), Expect = 9.760e-27
Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDET-----PDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCN 306
            AEIFDNT  +CG+YDF F +  KNGE +Y+GTSSNQW D       PD    N +  N   TNGNECV+IKEG+  N VE NIC+ Q D NS  +  RGD N  R N
Sbjct:  183 AEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYN 289          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.810e-26
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWV-----DETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCNDI 312
            AE++ N I DCGIYD+  + + KNGEGVY+GTSSNQW      D+ PD+C GN+++ N I T GNE +++KEGS    +E N    Q D++SG  G RGD + IR N I
Sbjct:  187 AEVYSNYIIDCGIYDYREDGDGKNGEGVYVGTSSNQWDSDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHI 295          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT)

HSP 1 Score: 110 bits (276), Expect = 3.330e-26
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVD-----ETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCNDIPKFI 324
            +EI  NTI +CG YDF F +  KNGEG+YIGTS+ QW D       PD    N+V  N I T GNEC++IKEG+T N +E N C  Q D  SG +  RGD N  R ND+   +
Sbjct:   20 SEIAYNTIANCGAYDFLFNAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQGNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSV 132          
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.180e-25
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWV-----DETPDICAGNVVKGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIRCNDI 312
            AE++ N I DCGI+DF  + + KNGEGVY+GTSS+QW      D+ PD C GN+++ N I T GNE +++KEGS    +E N    Q D++SG  G RGD + IR N I
Sbjct:  186 AEVYSNHITDCGIFDFREDGDGKNGEGVYVGTSSSQWDNDNNWDDVPDACMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHI 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11486.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR9_ECTSI1.870e-3762.75FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE2.970e-3661.76Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D7FZD2_ECTSI2.840e-3558.82FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR8_ECTSI1.160e-3460.78FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5LEX7_9PHAE2.960e-3463.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3G3_9PHAE2.160e-2749.54Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
UPI00036AEC559.760e-2753.27right-handed parallel beta-helix repeat-containing... [more]
A0A6H5L8H5_9PHAE1.810e-2649.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1G2MDL9_9BACT3.330e-2648.67F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
A0A6H5JYT7_9PHAE2.180e-2548.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11486contigH-elongata_contig11486:7569..8265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.5
Seed ortholog evalue4.9e-22
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.5818837-CDS-H-elongata_contig11486:7568..77871622929664.5818837-CDS-H-elongata_contig11486:7568..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11486 7569..7787 -
1691679110.9189801-CDS-H-elongata_contig11486:7568..77871691679110.9189801-CDS-H-elongata_contig11486:7568..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11486 7569..7787 -
1622929664.5943184-CDS-H-elongata_contig11486:8157..82651622929664.5943184-CDS-H-elongata_contig11486:8157..8265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11486 8158..8265 -
1691679110.9278092-CDS-H-elongata_contig11486:8157..82651691679110.9278092-CDS-H-elongata_contig11486:8157..8265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11486 8158..8265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11486.1187.1prot_H-elongata_contig11486.1187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11486 7569..8265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11486.1187.1

>prot_H-elongata_contig11486.1187.1 ID=prot_H-elongata_contig11486.1187.1|Name=mRNA_H-elongata_contig11486.1187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
AEIFDNTIQDCGIYDFYFESEDKNGEGVYIGTSSNQWVDETPDICAGNVV
KGNIISTNGNECVEIKEGSTGNFVEENICTNQLDENSGCYGVRGDDNTIR
CNDIPKFI*
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mRNA from alignment at H-elongata_contig11486:7569..8265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11486.1187.1 ID=mRNA_H-elongata_contig11486.1187.1|Name=mRNA_H-elongata_contig11486.1187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=697bp|location=Sequence derived from alignment at H-elongata_contig11486:7569..8265- (Himanthalia elongata Himel1 dioecious)
GCGGAGATCTTCGATAACACCATCCAGGACTGCGGCATTTACGATTTCTA CTTTGAGTCGGAAGACAAAAATGGCGAAGGCGTGTATATTGGAACTTCGA GCAACCAGGTAAGCCATCCCAACCCAATTCCGCAACGATGTCCTTGTGCT GCTTAATACTAGCCAAACTATCCCACCCGCCTTTCTTCCTAGAGGCATAC AGTACACAAGGCTTCAAGATATTCGTCGAAATATCGCTCGTAAAGGTAGT GGCTAAGTGCTAGCGAACACCGCTTTCATTATATCATATTACCAAGAACA TGACGCAAGAGTTTCATGATACCTCACGCTCTAACGGGGTTGACGAATGA TTGAATTCGAGGTCAAAATATTGTCTTTCTCTTACATTCAGCACGATTAC TCCTTCCACCCGACTCACACTACTCTATGGGGAATTTCTTTCTAAAACCA TGCGGCTTTACTTAAATTGTACCGGCAGTGGGTCGACGAAACGCCAGACA TCTGCGCCGGCAACGTCGTGAAGGGAAATATCATCAGCACTAACGGTAAC GAGTGTGTGGAGATCAAGGAAGGCTCGACGGGAAACTTCGTAGAGGAGAA CATCTGCACCAATCAGCTCGACGAAAACTCTGGCTGCTACGGTGTCCGCG GAGACGACAACACGATAAGGTGCAATGACATTCCGAAATTCATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11486:7569..8265-

>mRNA_H-elongata_contig11486.1187.1 ID=mRNA_H-elongata_contig11486.1187.1|Name=mRNA_H-elongata_contig11486.1187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig11486:7569..8265- (Himanthalia elongata Himel1 dioecious)
GCGGAGATCTTCGATAACACCATCCAGGACTGCGGCATTTACGATTTCTA
CTTTGAGTCGGAAGACAAAAATGGCGAAGGCGTGTATATTGGAACTTCGA
GCAACCAGGCGGAGATCTTCGATAACACCATCCAGGACTGCGGCATTTAC
GATTTCTACTTTGAGTCGGAAGACAAAAATGGCGAAGGCGTGTATATTGG
AACTTCGAGCAACCAGTGGGTCGACGAAACGCCAGACATCTGCGCCGGCA
ACGTCGTGAAGGGAAATATCATCAGCACTAACGGTAACGAGTGTGTGGAG
ATCAAGGAAGGCTCGACGGGAAACTTCGTAGAGGAGAACATCTGCACCAA
TCAGCTCGACGAAAACTCTGGCTGCTACGGTGTCCGCGGAGACGACAACA
CGATAAGGTGCAATGACATTCCGAAATTCATCTGATGGGTCGACGAAACG
CCAGACATCTGCGCCGGCAACGTCGTGAAGGGAAATATCATCAGCACTAA
CGGTAACGAGTGTGTGGAGATCAAGGAAGGCTCGACGGGAAACTTCGTAG
AGGAGAACATCTGCACCAATCAGCTCGACGAAAACTCTGGCTGCTACGGT
GTCCGCGGAGACGACAACACGATAAGGTGCAATGACATTCCGAAATTCAT
CTGA
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