prot_H-elongata_contig47431.11862.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47431.11862.1
Unique Nameprot_H-elongata_contig47431.11862.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
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BLAST of mRNA_H-elongata_contig47431.11862.1 vs. uniprot
Match: A0A6H5JQY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-7
Identity = 53/83 (63.86%), Postives = 54/83 (65.06%), Query Frame = 0 
Query:    3 LDDDLISDSSLRREYDDTFLNQPLRGEQRRGEQ-------------HXXXXXXXXXXXXXXXXXEGGDFGADAGNLVAAQGRA 72
            LDDDLIS SSLRREYDD +LNQPLRGE RRGEQ             H   XXXXXXXXXXXXXX   D GAD   LVA   RA
Sbjct:  333 LDDDLISHSSLRREYDDIYLNQPLRGEHRRGEQQKSWAYSGDVGDEHGGAXXXXXXXXXXXXXXXTADLGADMEELVAGMARA 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47431.11862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQY6_9PHAE4.870e-763.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47431contigH-elongata_contig47431:2277..3797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47431.11862.1mRNA_H-elongata_contig47431.11862.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47431 1915..3797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47431.11862.1 ID=prot_H-elongata_contig47431.11862.1|Name=mRNA_H-elongata_contig47431.11862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
GSLDDDLISDSSLRREYDDTFLNQPLRGEQRRGEQHGQYHWAFASGYESG
FEGEGGDFGADAGNLVAAQGRARAKGHGRERARTKSGSLSSASTVASATK
SAKGVGKEEHKSRRSKSERSSGGTPGRGARGSSPRTNARQARVSQRLSSG
TSSSFASSAAGASAGAGTGASGGGSTSAAGDPRESLSRRSSAGSSARPST
RKR*
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