mRNA_H-elongata_contig47431.11862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47431.11862.1
Unique NamemRNA_H-elongata_contig47431.11862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47431.11862.1 vs. uniprot
Match: A0A6H5JQY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.500e-6
Identity = 53/83 (63.86%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    7 LDDDLISDSSLRREYDDTFLNQPLRGEQRRGEQ-------------HXXXXXXXXXXXXXXXXXEGGDFGADAGNLVAAQGRA 216
            LDDDLIS SSLRREYDD +LNQPLRGE RRGEQ             H   XXXXXXXXXXXXXX   D GAD   LVA   RA
Sbjct:  333 LDDDLISHSSLRREYDDIYLNQPLRGEHRRGEQQKSWAYSGDVGDEHGGAXXXXXXXXXXXXXXXTADLGADMEELVAGMARA 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47431.11862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQY6_9PHAE2.500e-663.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47431contigH-elongata_contig47431:1915..3797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004600.1
Hectar predicted targeting categoryother localisation
Exons3
Model size976
Cds size612
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47431.11862.1prot_H-elongata_contig47431.11862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47431 2277..3797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.107108-UTR-H-elongata_contig47431:1914..22761622930783.107108-UTR-H-elongata_contig47431:1914..2276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47431 1915..2276 -
1691679568.2164078-UTR-H-elongata_contig47431:1914..22761691679568.2164078-UTR-H-elongata_contig47431:1914..2276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47431 1915..2276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.1190395-CDS-H-elongata_contig47431:2276..25241622930783.1190395-CDS-H-elongata_contig47431:2276..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 2277..2524 -
1691679568.2254393-CDS-H-elongata_contig47431:2276..25241691679568.2254393-CDS-H-elongata_contig47431:2276..2524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 2277..2524 -
1622930783.1332872-CDS-H-elongata_contig47431:2938..30841622930783.1332872-CDS-H-elongata_contig47431:2938..3084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 2939..3084 -
1691679568.233903-CDS-H-elongata_contig47431:2938..30841691679568.233903-CDS-H-elongata_contig47431:2938..3084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 2939..3084 -
1622930783.1479096-CDS-H-elongata_contig47431:3579..37971622930783.1479096-CDS-H-elongata_contig47431:3579..3797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 3580..3797 -
1691679568.2428255-CDS-H-elongata_contig47431:3579..37971691679568.2428255-CDS-H-elongata_contig47431:3579..3797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47431 3580..3797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47431.11862.1

>prot_H-elongata_contig47431.11862.1 ID=prot_H-elongata_contig47431.11862.1|Name=mRNA_H-elongata_contig47431.11862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
GSLDDDLISDSSLRREYDDTFLNQPLRGEQRRGEQHGQYHWAFASGYESG
FEGEGGDFGADAGNLVAAQGRARAKGHGRERARTKSGSLSSASTVASATK
SAKGVGKEEHKSRRSKSERSSGGTPGRGARGSSPRTNARQARVSQRLSSG
TSSSFASSAAGASAGAGTGASGGGSTSAAGDPRESLSRRSSAGSSARPST
RKR*
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mRNA from alignment at H-elongata_contig47431:1915..3797-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47431.11862.1 ID=mRNA_H-elongata_contig47431.11862.1|Name=mRNA_H-elongata_contig47431.11862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1883bp|location=Sequence derived from alignment at H-elongata_contig47431:1915..3797- (Himanthalia elongata Himel1 dioecious)
GGTTCGCTAGACGACGATCTTATTAGCGACAGCAGTCTGCGCCGTGAATA
CGATGATACATTTCTGAACCAGCCTTTAAGAGGCGAACAGCGCCGAGGAG
AACAGCATGGGCAATACCACTGGGCATTTGCTAGCGGCTACGAGAGCGGT
TTTGAGGGCGAAGGCGGGGATTTCGGAGCGGACGCGGGCAACCTTGTAGC
TGCCCAGGGTCGCGCGCGGTGAGGGCGCCGGGCGGAAGGTTTGGCTTGAC
AGTGCGCTCTGTAGATTAAATTCTTGCTTTGAAAATTGCCGTTGGTGCCG
CTTCGACGCGTTATAATTTCTCACTAGCATGCTCCATGTGTCGCTCAAAA
GACGAGCGCGGGCAATCGTGCTTTGTGGTTACGCGTAGATATTATTAGCT
GTTGCATCTGTTGTTTTGAAGATGTCCCTGTAGCCCGCCATCAAGATGTG
TATTCACAGTGTCTAGGCACCCAAGTGTCCCAAAGCTGAACTCCTCTGCG
AAGAACATAGGTATGCTTTTTATTGTTTCACACTTTGTGGAAAAGCTACG
AGTGTGCAGAAAGAATGCGTTCACAAAACGCTCGAGCGTACGAGCACGCC
CTTGGTCCAGGTAGGGTCACATGCTTCGCCAAGAAGCCCATCTGCTGCGA
CGGGTCGTTTCTCTCTGTGTTTATATCCTGTTTCGTCGGCCTTATTTTTT
TCCGCTGCCCCAGGGCAAAAGGTCACGGTCGCGAGAGAGCGAGGACGAAA
TCCGGGTCGCTGTCCTCAGCGTCGACAGTGGCGTCCGCGACCAAGAGCGC
TAAAGGTGTAGGCAAGGAGGAACATAAGTCCAGGAGGAGCAAATCAGAGC
GCAGCTCGGGTGAGATGGAGGTCGTTCGGGGTAGCATCAACGAAGCTAGA
GCGGTTCGAGTCTCTTGCCCCGCTCTCGCGAGGATCTAGAGAAGCTAGCA
GGTTTACTTGAAGGTGGATGTATCGTGTTTCAGCAAAAACACGCGTGAAA
AAGAAAGCGGTTTCCCGTTCTGTCCCACACAAGTATTGCGTAGCGCGTAA
CCGTACTGCTGTTTATTTTTTCTTGAGATCAAAGCTGAGTGCTCTTCTCT
ACGGTAAAATGCTCTTGCGAGCCAAGAATGAAAATAAGCAAAACAGAGGC
TGGCGCCTGTATCGCCCGCCTTCTTTTTGCATCACGCACGAGTTCCTTGC
CGTCGTCAAACGCTTTTTTCACGCAATCACTCCACAGTTCGTGACATAAC
TGCATCCACTTCAACCACCGCAGGAGGCACACCCGGCCGAGGTGCTCGCG
GCAGCTCCCCGCGCACGAACGCGCGCCAAGCGAGGGTTTCTCAGCGGTTA
TCCAGCGGCACTTCTTCCTCCTTTGCGTCTTCGGCCGCGGGCGCGTCGGC
GGGAGCAGGGACAGGGGCATCTGGGGGGGGCAGCACGTCAGCAGCCGGTG
ATCCGCGCGAGTCTTTATCTCGACGGAGCAGCGCAGGAAGCTCGGCTCGT
CCGTCAACGCGGAAGCGCTAGTTGACTGGGTGGGTGGTTGAGTGTACAGC
GAGCACGACTGGTGCGTTGCATTTATGTGCGACCCTCCGCTGCGCCACTG
GTCATCGTAAGAGTTTCGATGTGGACGCATTGTCCTGTGTACGCGCTCCG
CTCCTTGCTAGGGGCGCAAAAGATTAGAGTTTGTCTTCCCCGCACGCTGC
AGGTCCCGCGGCCGACCGTGCGTCTGCATATCCTAAAAATTCCTGTGTTA
ACCCCTTGCAACGAAAACGGACCATTCCGATCACGTCCTAACCCGAACCG
CTTCCGCATACTATTGGGGGGATACTGTGTGTTTTTTTCATCATGCACGC
GCTTGATTTGAAGCTACGCCAGCTGAAAGACGG
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Coding sequence (CDS) from alignment at H-elongata_contig47431:1915..3797-

>mRNA_H-elongata_contig47431.11862.1 ID=mRNA_H-elongata_contig47431.11862.1|Name=mRNA_H-elongata_contig47431.11862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig47431:1915..3797- (Himanthalia elongata Himel1 dioecious)
GGTTCGCTAGACGACGATCTTATTAGCGACAGCAGTCTGCGCCGTGAATA
CGATGATACATTTCTGAACCAGCCTTTAAGAGGCGAACAGCGCCGAGGAG
AACAGCATGGGCAATACCACTGGGCATTTGCTAGCGGCTACGAGAGCGGT
TTTGAGGGCGAAGGCGGGGATTTCGGAGCGGACGCGGGCAACCTTGTAGC
TGCCCAGGGTCGCGCGCGGGTTCGCTAGACGACGATCTTATTAGCGACAG
CAGTCTGCGCCGTGAATACGATGATACATTTCTGAACCAGCCTTTAAGAG
GCGAACAGCGCCGAGGAGAACAGCATGGGCAATACCACTGGGCATTTGCT
AGCGGCTACGAGAGCGGTTTTGAGGGCGAAGGCGGGGATTTCGGAGCGGA
CGCGGGCAACCTTGTAGCTGCCCAGGGTCGCGCGCGGGCAAAAGGTCACG
GTCGCGAGAGAGCGAGGACGAAATCCGGGTCGCTGTCCTCAGCGTCGACA
GTGGCGTCCGCGACCAAGAGCGCTAAAGGTGTAGGCAAGGAGGAACATAA
GTCCAGGAGGAGCAAATCAGAGCGCAGCTCGGGGCAAAAGGTCACGGTCG
CGAGAGAGCGAGGACGAAATCCGGGTCGCTGTCCTCAGCGTCGACAGTGG
CGTCCGCGACCAAGAGCGCTAAAGGTGTAGGCAAGGAGGAACATAAGTCC
AGGAGGAGCAAATCAGAGCGCAGCTCGGGAGGCACACCCGGCCGAGGTGC
TCGCGGCAGCTCCCCGCGCACGAACGCGCGCCAAGCGAGGGTTTCTCAGC
GGTTATCCAGCGGCACTTCTTCCTCCTTTGCGTCTTCGGCCGCGGGCGCG
TCGGCGGGAGCAGGGACAGGGGCATCTGGGGGGGGCAGCACGTCAGCAGC
CGGTGATCCGCGCGAGTCTTTATCTCGACGGAGCAGCGCAGGAAGCTCGG
CTCGTCCGTCAACGCGGAAGCGCTAGGAGGCACACCCGGCCGAGGTGCTC
GCGGCAGCTCCCCGCGCACGAACGCGCGCCAAGCGAGGGTTTCTCAGCGG
TTATCCAGCGGCACTTCTTCCTCCTTTGCGTCTTCGGCCGCGGGCGCGTC
GGCGGGAGCAGGGACAGGGGCATCTGGGGGGGGCAGCACGTCAGCAGCCG
GTGATCCGCGCGAGTCTTTATCTCGACGGAGCAGCGCAGGAAGCTCGGCT
CGTCCGTCAACGCGGAAGCGCTAG
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