mRNA_H-elongata_contig47423.11861.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: D7FWX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI) HSP 1 Score: 470 bits (1209), Expect = 2.170e-157 Identity = 233/337 (69.14%), Postives = 268/337 (79.53%), Query Frame = 1
Query: 43 MLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
MLDFVLHP S DTSGI V D L +V W SKQ+DPIDGE LPDASQT E + KGLFKDKFTAALLNGIEPEDGG VGTP ES+ NGDCLLNSVAAFFAK G RGVRSAVKTMAVKLRLS+VL G KYME+FLL+Q+ HFG WYNYTSDVRE L KNGW V PD DNNW VGS +CA L++LAQL SIA+PG WL QFVFPILATVVQSPLR+++P N+LN A GGPWKHTLFLP + + R TLHV +T+ YSSSY PPFDNA YL YV+N LPELNHFVT+S D A VAK+LAL+KF LK A +A A++ ++ +A+L P ++ ++E
Sbjct: 1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLTKGLFKDKFTAALLNGIEPEDGGGVGTPFESESNGDCLLNSVAAFFAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCAWLMFLAQLRSIAKPGAWLHQFVFPILATVVQSPLRLFLPLNTLNNAQGGPWKHTLFLPAWETGR-RPTLHVAMTMGYSSSYLPPFDNATGYLEYVENQLPELNHFVTVSGDTAIVAKDLALTKFRTLKSKAKEAVTASKRQVHDAMLGPKLNELTADEE 336
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 435 bits (1118), Expect = 5.270e-138 Identity = 227/357 (63.59%), Postives = 269/357 (75.35%), Query Frame = 1
Query: 1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFV------AKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
MA+ +QALAKV+ LDFVLHP S DTSGI V D L +V SKQ DP+DGE LPDAS+ E +GLFK KFTAALLNG++PEDGG VGTP ES+GNGDCLLNSVAAF AK G RGVRSAVKTMAVKLRLS+VL G KYMELFLL+Q++HFG WYNYT+DVRE L KNGW V DNNW VGS +CARL++LAQL S A+PG WLQQF FPILATVVQSPLRV++PFN+ A GG WKH +F P + A+ RSTLHV +T YSSSY PPFDNA YL YV+N LPELNHFVT+S+D A VAK+ A+ KF LK A +A A++ ++Q+A+L P ++ ++E
Sbjct: 1 MANSQLQALAKVRGTLDFVLHPSSPDTSGIPVEDERLQKVTECVSKQDDPVDGELLPDASKVHGELTDRKGAPGEGLFKGKFTAALLNGVKPEDGGGVGTPFESEGNGDCLLNSVAAFLAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMELFLLEQDYHFGAWYNYTTDVRERLEKNGWHVVH-VDNNWHVGSSNCARLMFLAQLRSKAKPGAWLQQFAFPILATVVQSPLRVFLPFNAFTNAQGGSWKH-IFQPAWETAR-RSTLHVAMTTGYSSSYHPPFDNATGYLEYVENQLPELNHFVTVSDDTAIVAKDRAVRKFRMLKSQAKEAVKASKRQVQDAMLGPELNELTADEE 354
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JY21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY21_9PHAE) HSP 1 Score: 377 bits (968), Expect = 4.350e-121 Identity = 201/342 (58.77%), Postives = 236/342 (69.01%), Query Frame = 1
Query: 115 RVKTWASKQQDPIDGEYLPDASQ-----------------------------TVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
+V W SKQ+DP DGE LPDASQ T E AKGLFKDKFTAALLNG+EPEDGG VGTP S+GNGDCLLNSVAAFFAK G RGVRSAV+TMAVKLRLS+ + HFG WYNYTSDVRE L KN W V PD DNNW VGS +CARL++LAQL SIA+P WLQQFV PILATVV SPLRV++PFN+ N A GGPWKHT FLP + A+ RSTLHV +T+ Y+SSY PPFDNA YL YV+N LPELNHFVT+S+D A VAK+ A+ KF LK A +A A++ ++Q+A+L P ++ ++E
Sbjct: 12 KVTEWVSKQEDP-DGELLPDASQVPGELTVFSTLTINLIIYGRNVSSSIPVQTAKELQAKGLFKDKFTAALLNGVEPEDGGGVGTPFGSEGNGDCLLNSVAAFFAKEGGRGVRSAVQTMAVKLRLSV---------------DDHFGAWYNYTSDVRERLEKNEWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPRAWLQQFVVPILATVVHSPLRVFLPFNTFNNAQGGPWKHTHFLPAWETAR-RSTLHVAMTMGYNSSYHPPFDNATGYLEYVENQLPELNHFVTVSDDTAIVAKDRAVRKFRMLKSQAKEAVKASKRQVQDAMLGPELNKLTADEE 336
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: D7FZ28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ28_ECTSI) HSP 1 Score: 325 bits (833), Expect = 9.640e-109 Identity = 159/210 (75.71%), Postives = 174/210 (82.86%), Query Frame = 1
Query: 1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWL 630
MA+ +QALAKV+ MLDFVLHP S DTSGI V D L +V W SKQ+DPIDGE LPDASQT E +AKGLFKD FTAALLNGIEPEDGG VGTP ES+GNGDCLLNSVAA FAK G RGVRSAVKTMAVKLRLS+VL G KYME+FLL+Q+ HFG WYNYTSDVRE L KNGW V PD DNNW VGS +CARL++LAQL SIA+PG WL
Sbjct: 1 MANSQLQALAKVRGMLDFVLHPSSPDTSGIPVEDERLQKVMEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDNFTAALLNGIEPEDGGGVGTPFESEGNGDCLLNSVAALFAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPGAWL 210
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5KLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL4_9PHAE) HSP 1 Score: 281 bits (720), Expect = 7.360e-92 Identity = 141/187 (75.40%), Postives = 151/187 (80.75%), Query Frame = 1
Query: 1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVG 561
M+S +QALAKV+ MLDFVLHP S DTSGI V D L +V W SK +DPIDGE LP ASQT +E VAKGLFKDKFTAALLNGIEPEDGG VGTP ESDGNGDCLLNSVAAFFAK G RGVRSAVKTMAVKLRLS+VL G KYMELFLL+Q+ HFG WYNYTSDV E L KNGWD PD D + G
Sbjct: 1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKWEDPIDGELLPGASQTAEELVAKGLFKDKFTAALLNGIEPEDGGGVGTPFESDGNGDCLLNSVAAFFAKDGGRGVRSAVKTMAVKLRLSVVLYGLKYMELFLLEQDEHFGAWYNYTSDVWERLAKNGWDGAPDPDKTGTSG 187
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE) HSP 1 Score: 285 bits (728), Expect = 3.460e-87 Identity = 144/210 (68.57%), Postives = 159/210 (75.71%), Query Frame = 1
Query: 1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVD---EFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPG 621
M+S +QALAKV+ MLDFVLHP S DTSGI V D L +V W K++DPIDGE LPDA Q F + + A LLNGIEPEDGG VGTP ESDGNGDCLLNSVAAFFAK G RGVRSAVKTMAVKLR+S+VL G KYMELFLL+Q+ H G WYNYTSDVRE L KNGWDV PD NNW VGS CARL++LAQL SIA+PG
Sbjct: 1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVFKREDPIDGELLPDACQVCAPQRSFWPRACLRTSSPATLLNGIEPEDGGGVGTPFESDGNGDCLLNSVAAFFAKDGGRGVRSAVKTMAVKLRVSVVLYGLKYMELFLLEQDEHLGAWYNYTSDVRERLGKNGWDVAPDRGNNWHVGSSKCARLMFLAQLRSIAKPG 210
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.180e-85 Identity = 149/224 (66.52%), Postives = 162/224 (72.32%), Query Frame = 1
Query: 64 PCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVY-----IPFNSLNAANG 720
P S DTSGI V D L +V W SKQ+DPIDGE LPDASQT E +AKGLFKDKFTAALLNG+EPED G VGTP ES+GNGDCLLNSVAA FA G RGVRSAVKTMAVKLR S+ + HFG WYNYTSDVR+ L KNGW V PD DNNW VGS CARL++LAQL SIA+PG WLQQFVFPILATV QSPL + +P NS N G
Sbjct: 16 PVSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDKFTAALLNGVEPEDDGGVGTPFESEGNGDCLLNSVAALFANEGGRGVRSAVKTMAVKLRFSV---------------DGHFGVWYNYTSDVRKRLEKNGWHVVPDVDNNWHVGSSKCARLMFLAQLRSIAKPGAWLQQFVFPILATVAQSPLDDWWMCFGLPPNSKNRLQG 224
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE) HSP 1 Score: 264 bits (674), Expect = 2.540e-80 Identity = 146/321 (45.48%), Postives = 197/321 (61.37%), Query Frame = 1
Query: 7 SPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSA 969
+P L++ + L VL+ DT GIAV P L K ASK DPI L S+T E K L D FT ALL G+ P DG VGTP ++G+G+C LN+VA F RG+R+ VKT A KLRL+IVL G +++E ++ QE F NY +VR+ L K+GW +EPD DN VGS CARL+++AQL A+ WLQQFVFPILATV+Q+PLRV++P SL+ A G W HTLF P++ R +HVV TI S+ Y P F++AA + +LPELNH+V++S++NA A A++ +L+ +A
Sbjct: 16 NPFYAKLSESKDALGAVLNNRGGDTHGIAVEQPQLKTAKLRASKVTDPILSNPLTSPSKTSSELRDKDLCFDYFTEALLRGVPPVDGCGVGTPFITEGDGNCHLNAVAQLFVVKKVRGIRNDVKTFAAKLRLAIVLEGLRHIEAYVSVQEDFFMDGSNYGDEVRDELPKSGWKIEPDLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFPILATVIQTPLRVFLPSRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRPNFEDAAGWRAQHMPHLPELNHWVSLSSENAATAHASAVAASAQLRQTA 336
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K057_9PHAE) HSP 1 Score: 244 bits (622), Expect = 4.650e-76 Identity = 126/181 (69.61%), Postives = 137/181 (75.69%), Query Frame = 1
Query: 1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTD 543
M+S +QALAKV+ MLDFVLHP S DTSGI V D L +V W SK++DPIDGE LPDA QT +E +AKGLFKDKFTAALLNGIEPEDGG VGTP ESDGNGDCLLNSVA TMAVKLRLS+VL G KYMELFLL+Q+ HFG WYNYTSD RE L KNGWDV PD D
Sbjct: 1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKREDPIDGELLPDACQTAEELLAKGLFKDKFTAALLNGIEPEDGG-VGTPFESDGNGDCLLNSVA----------------TMAVKLRLSVVLYGLKYMELFLLEQDEHFGAWYNYTSDTRERLAKNGWDVAPDPD 164
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE) HSP 1 Score: 261 bits (668), Expect = 1.410e-75 Identity = 145/338 (42.90%), Postives = 201/338 (59.47%), Query Frame = 1
Query: 7 SPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLD 1020
+P AL ++ +L V+ D GIAV+ PA+ K A ++ P D LP SQT E + KG FT+A+L GI EDG GTP +DG+G+CLLN+VA K RGVR+AVKTMA +LRL IV+ G + +E++L Q +GTWYNY V L + GW V+ +N W + S DCARL++L L IAR V+LQQFV P+LATV++ P+RV++PF S+ NGG W+ TLF P+ P R T+HVV+T S+ Y P F +A +Y R + ELNHFV +S+DN E A+++ L A + ++L+EA+ D
Sbjct: 12 NPQQAALGDLRSLLGAVVRKPRGDAHGIAVDHPAVAEAKRRALQKGGPFDHFPLPSPSQTDRELLEKGAEPCHFTSAILRGINHEDGREAGTPYLTDGDGNCLLNAVAMLLVKKQPRGVRNAVKTMAAQLRLGIVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLKRCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFISVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIRELNHFVALSHDNTAKNHEAAVTRMAGLVRLAQDDCKESEARLKEAVGD 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47423.11861.1 >prot_H-elongata_contig47423.11861.1 ID=prot_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=351bp MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPback to top mRNA from alignment at H-elongata_contig47423:699..2869- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47423.11861.1 ID=mRNA_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2171bp|location=Sequence derived from alignment at H-elongata_contig47423:699..2869- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47423:699..2869- >mRNA_H-elongata_contig47423.11861.1 ID=mRNA_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2106bp|location=Sequence derived from alignment at H-elongata_contig47423:699..2869- (Himanthalia elongata Himel1 dioecious)back to top |