prot_H-elongata_contig4741.11859.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4741.11859.1
Unique Nameprot_H-elongata_contig4741.11859.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length177
Homology
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A836CMA9_9STRA (Flagellar WD repeat-containing protein Pf 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMA9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.970e-8
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:  141 VLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            V EL+GHEDAVQSV FSP DD +VS ++DCTFR+WS
Sbjct:  595 VAELRGHEDAVQSVAFSPMDDCIVSAAADCTFRVWS 630
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: D8TZX5_VOLCA (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=D8TZX5_VOLCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.620e-7
Identity = 134/173 (77.46%), Postives = 145/173 (83.82%), Query Frame = 0 
Query:    4 VRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNICTGSGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISKTCVLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            VRL D+ + +CR   RGHVDSVN VAW PF++++ T S D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        EL GHEDAVQ+V+F PA   L+S  SD TFR+WS
Sbjct:  412 VRLXDLPASKCRMALRGHVDSVNEVAWLPFTSSLATASSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGVLQAELTGHEDAVQAVIFDPAGQYLMSCGSDNTFRVWS 584
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3GV74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV74_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    1 DHTVRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNI 37
            D T + +D+ + RCRQTFRGHVDSVN V  QPFSNN+
Sbjct:   26 DQTTKAFDMTTMRCRQTFRGHVDSVNFVTMQPFSNNV 62
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A6U4DU09_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DU09_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.880e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 0 
Query:  143 ELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIW 175
            EL+GHEDAVQ+V+F P D +L+S +SDCTFRIW
Sbjct:  574 ELRGHEDAVQAVIFDPTDRNLISAASDCTFRIW 606
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: F0YRQ4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRQ4_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:  145 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  249 RGHEDAVQCVAFDPADTLLVSTSTDCTFRIWS 280
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3ZNX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNX7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.220e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:  145 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  428 RGHEDAVQGVCFDPADTLLVSTSTDCTFRIWS 459
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3ZNS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.430e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:  145 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  558 RGHEDAVQGVCFDPADTLLVSTSTDCTFRIWS 589
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S0X5W5_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X5W5_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 3.950e-5
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:  135 TISKTCVLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 176
            T+    V ELKGHEDAVQ V+F P+   LVS  SD TFR+WS
Sbjct:  574 TVDGRLVAELKGHEDAVQGVVFDPSGKFLVSCGSDSTFRLWS 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CMA9_9STRA8.970e-872.22Flagellar WD repeat-containing protein Pf 20 n=1 T... [more]
D8TZX5_VOLCA1.620e-777.46Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]
A0A7S3GV74_9STRA2.130e-764.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U4DU09_9STRA1.880e-669.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YRQ4_AURAN3.150e-678.13Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZNX7_9STRA3.220e-678.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZNS2_9STRA3.430e-678.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0X5W5_9CHLO3.950e-559.52Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 37..51
score: 35.53
coord: 163..176
score: 32.41
coord: 79..93
score: 35.4
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 53..92
e-value: 5.3E-9
score: 45.9
coord: 95..134
e-value: 0.0011
score: 28.2
coord: 137..176
e-value: 6.4E-8
score: 42.3
coord: 11..50
e-value: 4.5E-10
score: 49.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 56..92
e-value: 3.1E-7
score: 31.0
coord: 107..134
e-value: 0.014
score: 16.3
coord: 13..50
e-value: 3.6E-8
score: 33.9
coord: 139..176
e-value: 2.1E-6
score: 28.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 144..176
score: 15.154
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 18..59
score: 15.388
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..17
score: 9.071
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 60..101
score: 11.177
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 101..176
e-value: 4.2E-20
score: 74.5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..100
e-value: 1.1E-32
score: 115.2
NoneNo IPR availablePANTHERPTHR14604:SF3SPERM-ASSOCIATED ANTIGEN 16 PROTEINcoord: 1..176
NoneNo IPR availablePANTHERPTHR14604WD40 REPEAT PF20coord: 1..176
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 37..51
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 79..93
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..176
score: 44.135
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4741contigH-elongata_contig4741:275..1534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4741.11859.1mRNA_H-elongata_contig4741.11859.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4741 275..1534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4741.11859.1 ID=prot_H-elongata_contig4741.11859.1|Name=mRNA_H-elongata_contig4741.11859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
DHTVRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNICTGSGDKTVSLWD
ARSGLCMQTFYGHTNAVNHVCCSIKGDMVASCDADGLVKLWDARMVAEIG
TMDAGPHPVNCVCLDRSATRLAAASNDGEVKVFDTISKTCVLELKGHEDA
VQSVLFSPADDSLVSTSSDCTFRIWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf