prot_H-elongata_contig114842.1185.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig114842.1185.1
Unique Nameprot_H-elongata_contig114842.1185.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length368
Homology
BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.570e-43
Identity = 138/393 (35.11%), Postives = 183/393 (46.56%), Query Frame = 0
Query:    1 PAGQYLLPGARETSRRRQLVGSDGR--------TARIGGGSVAMARLAATRVVTKPGIPLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISG-PLLEEGDEAKNGKWAEGRGGMKARTRRTMSVDNVRPSRQHRXXXXXXXXXXXXXXESKGLSALAAALEGLDCVVCDYPSAWR-----DSHERAVPSGSGSGGIRRELRSGGRGALTLGLTRSQSCHRPGEYRQEGAMPKLGCLVTAARRESVRLVSLSWAINCAIRGTRIKQQSRAEYLSPFLDEALG-GREPRITAAVRASMMSRVHAFVARTGERYEVDDHVRYAAHGASGTEQSPSADGSGSGRSARGRENPRTGQDRS--------DVRVGRVVSLELA--PSGRVFIAIEPL 368
            PA  YLLPGARE SRR                 TA+ GG S  ++R A  + V+K G PL GM +G+AHPSP TCE W +VL AAGA+ V RI+G PLL    + K   W        + +R T S    R +                   S   S  A  L GLDCV+CD+P AW      D  E    +G      RR +R  G      G    ++   P  +        LG +  AA+ E V +V+LSWA++C +RGTR++QQ+R EYL+PFLD ++  GR    + ++     +R+   V+R+G RYEV DHV ++A              +GSGR                          VGR+V LE A    GRVF  IEPL
Sbjct: 2713 PASPYLLPGAREASRRXXXXXXXXXXXXXXXXATAKAGG-SHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLLLLPPQEKTADWT-----TSSPSRGTRSCSRGRRT--------------AGASSSSSSSLQAGQLAGLDCVLCDFPGAWNGSGGGDDTECRAATG------RRPVRGNGGVPAIAGTATKKAKSSPPPF------SSLGLVFEAAKLEGVPVVALSWAMDCVVRGTRVRQQARPEYLTPFLDASVAAGRPSSRSQSLAGGTDTRLLVAVSRSGTRYEVGDHVYFSA--------------AGSGRGXXXXXXXXXXXXXXXXXXXXXXQAEVGRIVHLERAGGSGGRVFATIEPL 3059          
BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Match: D7FGY7_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.730e-14
Identity = 66/191 (34.55%), Postives = 80/191 (41.88%), Query Frame = 0
Query:    1 PAGQYLLPGARETSRRRQLVGSDGRTARIGGGSVAM-------ARLAATRVVTKPGIPLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISG-PLL------EEG------DEAKNGKWAEGRGGMKARTRRTMSVDNVRPSRQHRXXXXXXXXXXXXXXESKGLSALAAALEGLDCVVCDYPSAWRDS 171
            PA  YLLPGARE SR                            + +A  + V+K G PL GM +G+AHPSP TCE W +VL AAGA+ V R++G PLL      EE            G W+  RG      RRT    +                       S   S  A  L GLDCV+CD+P AW  S
Sbjct:  531 PASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRG------RRTAGASS-----------------------SSSSSLQAEQLAGLDCVLCDFPGAWNGS 692          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L777_9PHAE2.570e-4335.11BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FGY7_ECTSI2.730e-1434.55BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114842contigH-elongata_contig114842:3..1232 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114842.1185.1mRNA_H-elongata_contig114842.1185.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig114842 3..1232 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig114842.1185.1 ID=prot_H-elongata_contig114842.1185.1|Name=mRNA_H-elongata_contig114842.1185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=368bp
PAGQYLLPGARETSRRRQLVGSDGRTARIGGGSVAMARLAATRVVTKPGI
PLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISGPLLEEGDEAKNGK
WAEGRGGMKARTRRTMSVDNVRPSRQHRKGEEGEKRSGVNGVESKGLSAL
AAALEGLDCVVCDYPSAWRDSHERAVPSGSGSGGIRRELRSGGRGALTLG
LTRSQSCHRPGEYRQEGAMPKLGCLVTAARRESVRLVSLSWAINCAIRGT
RIKQQSRAEYLSPFLDEALGGREPRITAAVRASMMSRVHAFVARTGERYE
VDDHVRYAAHGASGTEQSPSADGSGSGRSARGRENPRTGQDRSDVRVGRV
VSLELAPSGRVFIAIEPL
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