prot_H-elongata_contig47374.11853.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47374.11853.1
Unique Nameprot_H-elongata_contig47374.11853.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length298
Homology
[Close]
BLAST of mRNA_H-elongata_contig47374.11853.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.210e-10
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0 
Query:    1 MGPGADDLVASMHSMSMGLGEILGPVLGGLASEHMPTSPAFACDPRALVLVPDLPVVEDH 60
            MG GADD+VAS H+MS+G+GE++GP++GG   E +PTSPAFAC+P       D+P+V+ H
Sbjct:  258 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPTSPAFACEP-------DVPIVQLH 310
[Close]
BLAST of mRNA_H-elongata_contig47374.11853.1 vs. uniprot
Match: A0A6H5KPD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD6_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-9
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:    1 MGPGADDLVASMHSMSMGLGEILGPVLGGLASEHMPTSPAFACDPRALVLVPDLPVVEDH 60
            MG GADD+VAS H+MS+G+GE++GP++GG   + +PTSPAFAC+P        +P+V+ H
Sbjct:   45 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVDLLPTSPAFACEPN-------VPIVQLH 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47374.11853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1X7_ECTSI2.210e-1055.00Major facilitator superfamily permease n=1 Tax=Ect... [more]
A0A6H5KPD6_9PHAE1.920e-951.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47374contigH-elongata_contig47374:2614..4103 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47374.11853.1mRNA_H-elongata_contig47374.11853.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47374 1851..4128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47374.11853.1 ID=prot_H-elongata_contig47374.11853.1|Name=mRNA_H-elongata_contig47374.11853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MGPGADDLVASMHSMSMGLGEILGPVLGGLASEHMPTSPAFACDPRALVL
VPDLPVVEDHMLEPLEQMFPVVEKQSQQQPQGEGEEERPPLDRVASLDRF
EDISPQLQQEQQQPPPPPPLALSLFPNLRSNQTVEAVPAIVDGGAGGVAM
AKEFEVVKDKERRLLLSLSSEIDGTREVEAESQAEREKGIVGDRSGSSGG
RSLVSAEPWRNVQQQQQQELEQGKMKARRTRKMLGGFQKSGGGHHDEDGD
GDGRGGEKGKEGISSCESSFPLATTILAWVAAELGERGWGPRCWKRG*
back to top