mRNA_H-elongata_contig473.11841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig473.11841.1
Unique NamemRNA_H-elongata_contig473.11841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI)

HSP 1 Score: 697 bits (1800), Expect = 2.200e-222
Identity = 470/1010 (46.53%), Postives = 597/1010 (59.11%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKG---------QSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVNICALCGPRFLVQHPVACILRPRPPTPASRSRKPTSRLQSRMEQEKQARARAPDPRVPVVSRPTASRTIYMAELAKKFSHRRN-SGDSERVVAPRYPTSTLNTPVPCVLVEALE--TGDPDCLNNERARTAS--------SRRINHHVDGQDEA-------GSGLDGSVKDVGSSQGLTQ----RASSASQST--------SLGNSSEG-----------QRLLAGGGACFVRLVIEGEVVCRETFHELFRGRGEAHR---------------RTDVSKDIIDGRVDVRHYDNSSA-------MDTFFIPHPPDYVPDWPAFGPGDRN----ELESNYGKSERNG--KLSSIRGASQDSLAEDVTSRVLKRLMRDVVMTDAVRGCFMALPVKARIPTFREVRQALPPPRPDAVVAVIASASLSNDQRINRNTSLEKPRLLLAISAAESA--------VVSTGPCAETNGANRQAWKAAQGERCITQPRGALAELVAALGLV-IGMQASFRAGKPSTTSVGSGRW--PFSK-LVAIQSCRMPIVILENLISSLDKITVRSLGKWLD-RVDIDTQSGPTTNKTLDLMPARSAIQATTPSGERLTVEGRSARED---LPASITVSEAMGSSE--ENKAAVIIQAQARRLQAVQIAEDAAKKRRCRLVDEALMNPKVQRTLAAALEGTFFNLIQ 2742
            ELRQN+II+RL  F  +PDPGTV+E+SA E + L I YS DSLSY GVHDLPVLV I EGR FWLDLKGTT+P     +YVPTGL + YVLEPVA+GTPL+EAP+Q TEL+NVG+  VSY VD   IKRAN SQG+G+ VFRLEEK G+I G  S FLRWRFLPLEAKEYVL+VTVR    +E Q  +E+ G         Q L+I LR  GYDPR RDPHSE LP +DLGLVHP RQLE+P GQ C+LG ERLRLGRIPQGA+ SR++S+RNCLL +AVEFSWDPEDTG+EN +++ GV+ I PSKG ++  QS L QV I A CGPRFL Q PVAC++   PPT A RSR+P SRL+SRME+E+QARARAP+PRVPVVSRPTA+R+ +MAE+AK  S R + S D  RV+ P YPTST++ PVP VL EALE  TG+   +  E  R                    G   A       G G++ +   V S+ GL      R  +AS  T        SL NS+ G           +   +GGGA  +RL +EGEVVC ETFH L+  RGE ++               RT  S     G V     D SS        +D F +P P  YVPDW AFG G +     ++  +  ++E+ G  K + ++ AS+D L   V SR+L+RLMRDVV ++  R C  +LP + R+PTF E+R A  P  PD V A +A    S+        +  +P L  A +A  SA          ST P    +G+      A  G R  +       EL+AAL  V +G++A   A K     VG  R   P +  LVAI++   P+V L+ L++++D   V  +  WLD R  ++ +      K L  +   +A    T S +    EG++   D   LP   T   AM +S   E+K A  IQAQARRLQAVQ  E+ A++R   L D A  +   Q+ +AAALEGTFFNL+Q
Sbjct: 1240 ELRQNEIIDRLKAFSLTPDPGTVVEVSAGEGRPLVISYSADSLSYGGVHDLPVLVSIKEGRHFWLDLKGTTVPPQSPTLYVPTGLPRSYVLEPVAIGTPLSEAPLQTTELLNVGETAVSYKVDSSGIKRANNSQGHGMPVFRLEEKTGSIAGGRSAFLRWRFLPLEAKEYVLRVTVRT---VEQQQHDERFGERFGEGPEEQMLEITLRGAGYDPRMRDPHSEILPAVDLGLVHPARQLEVPSGQPCILGAERLRLGRIPQGAILSRIISMRNCLLKSAVEFSWDPEDTGIENPLLTAGVVSIQPSKGRIDAAQSVLFQVTISAGCGPRFLGQRPVACVVCQEPPTTAIRSRRPKSRLESRMEEERQARARAPEPRVPVVSRPTAARSQHMAEIAKTLSTRHSRSDDHGRVLCPAYPTSTVDAPVPRVLAEALEQGTGNGPGMGGELPRDGGYGXXXXXXXXXXXXXXXGGSVARTQPGGTGKGINNTSGGVTSTTGLQPGPGGRGITASGQTNHAPGPALSLANSAGGGTDRFSSHGGGRPGTSGGGAVLLRLDVEGEVVCMETFHALYGERGEINQDDSGRSDPRAAVTSARTSTSSGQGGGGVGNPISDISSGTNINGGRVDAFVVPGPSRYVPDWAAFGAGHKEGGKVKIWGSLARTEKGGNDKTALLKRASEDPLVGSVASRILERLMRDVVASNGTRECLKSLPARPRVPTFTEIRSA--PSLPDRVAAALAPHLRSSSSASGTARATRRPLLTPAAAAVSSAPAASVDRDAASTAPRRTEDGSGHDDTPAGAGVRVNSNTPLTKEELLAALRAVGVGVKAP-PARKKGAKVVGHSRKKEPLAGFLVAIEASSGPVVTLQGLLAAVDSAAVGRIETWLDQRESLEAE----VRKPLPEISHVAAETKNTNSLDEKMEEGKAKERDHSPLPTK-TAGNAMDNSHTHESKMATTIQAQARRLQAVQATEEKARQRLLGLADTAAQDHDTQQIVAAALEGTFFNLMQ 2238
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A6H5LMU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMU0_9PHAE)

HSP 1 Score: 587 bits (1512), Expect = 3.630e-196
Identity = 347/655 (52.98%), Postives = 418/655 (63.82%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYG-----------VSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKG---------QSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVNICALCGPRFLVQHPVACILRPRPPTPASRSRKPTSRLQSRMEQEKQARARAPDPRVPVVSRPTASRTIYMAELAKKFSHRRN-SGDSERVVAPRYPTSTLNTPVPCVLVEALE--TGDPDCLNNERARTA----SSRRINHHVDGQDEAGSGLDGSVKDVGSS-------QGLTQR-------------ASSASQSTSLGNSSEGQRL-LAGGGACFVRLVIEGEVVCRETFHELFRGRGEAHR---------------RTDVSKDIIDGRVDVRHYDNSSA-------MDTFFIPHPPDYVPDWPAFGPGDRNELESNYGKS 1755
            ELRQN+II+RL  F  +PDPGTV+E+SA E + L I YS DSLSY GVHDLPVLV I EGR FWLDLKGTT+P    M++VPTGL++ YVLEPVA+GTPL+EAP+Q TEL+NVG+A VSY VD   IKRAN SQG+G           V VFRLEEK G+I G  S FLRWRFLPLEAKEYVL+VTVR    +E Q  +E+ G         Q+LDI LRA GYDPR RDPHSE LP +DLG VHP RQLE+P GQ C+LG ERLRLGRIPQGAV SR++S+RNCLL +AVEFSWDPEDTGVEN +++ GV+ I P KG ++  QS L QV I A CGPRFL Q PVAC++   PPT A RSR+P SRL+SRM++E+QARARAP+PRVPVVSRPTA+R+ ++AE+AK  S R + S D  RV+ P YPTST+N PVP VL EALE  TG+   +  E  R              VDG+ + G G     +  G         +G+T               A+     T   +S  G R   +GGGA  +RL +EGEVVC ETFH L+ GRGE ++                T  S     G V  R  D SS        +D F +P P  YVPDW AFG G +   +   G S
Sbjct:    3 ELRQNEIIDRLKAFSLTPDPGTVVEVSAGEGRPLVISYSADSLSYGGVHDLPVLVSIKEGRHFWLDLKGTTVPPQSPMLHVPTGLQRSYVLEPVAIGTPLSEAPLQTTELLNVGEAAVSYKVDSSGIKRANNSQGHGMPVRTSWSVVSVKVFRLEEKTGSIAGGGSAFLRWRFLPLEAKEYVLRVTVRT---VERQQHDERFGEWFGEGSEEQTLDITLRAAGYDPRMRDPHSEILPAVDLGFVHPARQLEVPSGQPCILGAERLRLGRIPQGAVLSRIISMRNCLLKSAVEFSWDPEDTGVENPLLTAGVVSIQPFKGRIDAAQSVLFQVTIFAGCGPRFLGQQPVACVVCQEPPTKAVRSRRPKSRLESRMDEERQARARAPEPRVPVVSRPTAARSQHVAEIAKTLSTRHSCSDDHGRVLCPAYPTSTVNAPVPRVLAEALEQGTGNGSGMGGELPRDGCYGGEEGEEEEKVDGRGDGGDGARNQPRGAGEGLQPGPGGRGITAAGQANRAPGPALCLANRTGGGTDRFSSRGGDRPGTSGGGAVLLRLDVEGEVVCMETFHALYGGRGEINQDDSGRSEPRAAARSVETSTSSGQGGGSVGDRSSDISSGTNINGGRVDAFVVPGPSRYVPDWAAFGAGHKESGKVKIGGS 654
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.670e-28
Identity = 106/329 (32.22%), Postives = 160/329 (48.63%), Query Frame = 1 
Query:   13 NDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTL-PRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRT--RDPHSE-KLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAV-------EFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVNICALCGPRFL 966
            N II+ L  FD SP   +   +    S +L I Y   S  + G H LP+L++I +G+Q WLDL+G TL PR   +V     +  +  L PVAVGT    AP+Q+ E VN G++ + Y V+  +++        G+ + R+E   G +    S  LR RFLPL+A  Y   +T++ +   +    E Q    LD IL   GYDPR   +DPH   K+P     + +  + +E P  Q  VL  E +  GR  Q A   R+V+IR      A        E+ W+       + +V  G++ + P  G +  G  A+ +V + A C P+ L
Sbjct: 1233 NKIIDELKCFDISPRQAS---LEPGGSCTLRIAYVPSSREFDGKHTLPILLKIGQGKQMWLDLEGRTLAPREPYLVVPKDPMTHKLPLHPVAVGTRPEHAPLQILECVNCGNSPLEYQVEYSSLRGDE-----GIDLLRVENSTGHVPPFGSADLRVRFLPLQASSYEAPLTIKYKYSTKGGMREVQ----LDTILTCSGYDPRDEKQDPHKGGKVPEGSTSINYDYQIVEAP-SQPAVLSRECVDFGRNTQRAHVYRMVTIRAPKALEATTDKPPIYEYQWE-----AAHDLVEKGILDVYPLSGKIFPGGVAVCRVALKADCEPQIL 1543
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A836C958_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C958_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.930e-19
Identity = 51/112 (45.54%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVN 336
            +LRQ+DII++L +F+ +P  GT++     +  +L + YS  SL Y G HDLPVL+RI +G+Q WL L+GTTLP     +++P     + +L PVAVGTPL+EAP Q +++ N
Sbjct:  226 QLRQSDIIDKLRVFEVTPRRGTLLP---GQGVTLRLGYSYTSLLYDGRHDLPVLLRIAKGKQLWLHLQGTTLPSPAPHLHLPLDPLHRLLLHPVAVGTPLSEAPYQTSDMFN 334
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: UPI00106B7D3B (cilia- and flagella-associated protein 65-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B7D3B)

HSP 1 Score: 104 bits (259), Expect = 6.470e-19
Identity = 85/312 (27.24%), Postives = 138/312 (44.23%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVN 936
            EL Q   I   HLF   P  GT   ++A  +Q+LT+ Y  D +   G++ LPVL +IT+GR+  L+  G T+      V+  +     ++  PV VG  L   P+Q     N G    +Y +D   +K  +  + YG  +F      GTI    +  + W F PLEAK Y++   VR+              ++  +    +GYD R      + L   +  +  PPRQ+     Q   L  ER+ LG++P     +RV+ + N      + + W  +D+   N      V+ I P  G ++   S +L++ 
Sbjct: 1098 ELHQMQTIGH-HLFSVEPSSGT---LAAGHAQTLTLKYKHDIV---GINRLPVLFKITKGREVLLNFTGVTVKASQPFVHFSS---TNFMFAPVPVG--LDTPPIQDYAFYNGGSVNATYEIDLTPLKELH-QENYGCEIFTCLNPTGTIAPGKTAIIHWVFEPLEAKTYIIDTPVRVLGC-----------ETTLVTFTGIGYDDRVM---GKTLSLEEHAIDIPPRQIASVGFQLSSLSEERIHLGQVPLRRKKTRVIFLSNKHREHTISYRWMLDDSPEHN------VVQIHPEFGIVKPRGSVVLKIT 1376
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A1V9Z751_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z751_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.530e-19
Identity = 98/338 (28.99%), Postives = 150/338 (44.38%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPM------QLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVNICALCGPRFLVQHPVACILR 996
            ELRQN II+   LF  +P  G    +   +S  L + YS  SL Y G+HDLP+L+ +++G++  L L G TLPRG   V++P   +  + L PV +G    +A M      Q  +  N GDA +   VD+      N +      V     +  T+    S FL   F PLE K Y   + + +E    + P   Q    L + + A GY P      S    R  +    PP + ++P      L  + + LG +   +  SRVV + N   T  + F+WD       + +V  G +   P  G L   +  +++V + A      +V H +AC LR
Sbjct: 1148 ELRQNIIIDS-KLFTVTPRTGV---LQPHQSLELRLSYSYASLQYDGMHDLPLLLSVSQGKKMMLALNGRTLPRGAPFVFLP---RTTWTLAPVMLGETGRKAHMHSRPVLQQFQFFNRGDAPLLVDVDDTEFAAINAAS-CNFPVLECLTQRATVPAHGSLFLDIEFCPLENKTYRASLLLAVEGV--DVPYTAQ----LQLPVVAQGYQPAQL---SYAAARASVVANGPPSEPKLPPQARAALSCDIVDLGHVCVHSEPSRVVVVTNTTATATLAFAWD-----AAHHLVHAGRVRFFPMSGKLGPQEHVVVRVTV-APQAELLVVDHDIACWLR 1462
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A6P8IY75_ACTTE (cilia- and flagella-associated protein 65-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IY75_ACTTE)

HSP 1 Score: 100 bits (248), Expect = 1.250e-17
Identity = 84/296 (28.38%), Postives = 138/296 (46.62%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTL-PRGYSMVYVPTGLKKQYVLEPVAVG--TPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVIC 879
            EL +  ++++  LF   P  G+   +S  ESQ+LT+ Y      + G + LPV+ +I++GR+  L+  G T+ P  Y + +  T    +++ EPV VG  TP    P+Q+ EL N G   V+Y +D   + +   +Q YG  +       G I    +  + W F PLEAK YV+ + +R+             G+++ +    VGYD R           +  G+  P +Q+   + Q   L +ERL  G +P   +  RV  I N      + F W+ E +  E  +  F +IC
Sbjct: 1111 ELHEMQVMDK-KLFTVEPKKGS---LSPGESQTLTLTYRH---LFTGTNKLPVIFKISKGREILLNFIGVTVDPGAYYVHFAST----KHLFEPVPVGGNTP----PVQIYELHNTGSMPVNYELDLEPLDQLE-AQNYGCRILDCLNPSGDIPPGCTALIHWVFAPLEAKTYVVDIPIRIIG-----------GEAVLVTFTGVGYDQRIMGDTMLFSEGVSTGV--PSKQIVPVQHQLATLSIERLSFGNLPLYTLCRRVFFITNSSSDHVISFRWNIEGSPAER-LYLFKMIC 1376
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A7R9YEH2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEH2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.690e-17
Identity = 91/318 (28.62%), Postives = 140/318 (44.03%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPT-----------GLKK----------------------QYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRTRD-----PHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDT 840
            ++R   II+ +  F  SP  G    +   E+ +L + YS +S  Y GVHDLPVLV+I  G+QF+L LKG TL R    V +P            G+ K                      +    PVA+GTP   AP+Q+  ++N G   VSY VD  + ++ + SQ + + +  +E   G I  RS   LR R+ PLE       V +R  +  +       K Q L   +   G+DPR +      P S K P        P +Q     GQ  +   ERL +  +      + +V+++N   ++ V F +  +D+
Sbjct:  866 QVRVTRIIQDIRCFGVSPKAGV---LEPGEAVTLRLSYSYESRDYDGVHDLPVLVKIRHGKQFYLHLKGCTL-RNTDAVLLPDTFPDTNRTNPIGMLKAGEAVPPLSDCDGLAPKVPNPSEIKFAPVALGTPSHLAPLQVVGILNPGLLNVSYSVDMESFEKFS-SQNFNLCMMSVENPSGVIPPRSELQLRCRYWPLELGPLRFPVALRYTANADT------KSQVLQFDILCEGFDPRRKRNGSTLPCSTKPPS---NYCAPEKQTLQVHGQCVIFSRERLHVRSLCAETSRTVIVTMKN-FSSSRVLFEFQNDDS 1168
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A067CZB2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZB2_SAPPC)

HSP 1 Score: 97.4 bits (241), Expect = 8.760e-17
Identity = 95/338 (28.11%), Postives = 156/338 (46.15%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTP------LAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILRAVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVNICALCGPRFLVQHPVACILR 996
            ELRQN II+   LF  +P  G    +   +S  L + YS  S+ Y GVHDL +LV +++G++  L L G TLP+    +++P   +  +VL PV +          A   +Q  ++ N GD      VD+  + R N +  +   +F    +  ++   +S FL   F PLE   Y   + + +E  +E+  +++ K   L I+ R  GYD  T+   +E    M  G   PPR  + P      L  + L LG +      +R+V + N   T  + F+WD     V  + V F      P +G L+  +  +++V I A      ++ H +AC +R
Sbjct: 1127 ELRQNIIIDS-KLFTVAPRKGV---LQPHQSLLLRLSYSYASMQYDGVHDLQLLVSVSQGKKMMLSLHGRTLPKATPFLFLP---RTNWVLSPVLLSESGRKEHLHARPALQQFQVFNRGDTPFLLDVDDSDLARINATS-HNFPIFDCLTQRVSVPPNASVFLDLEFCPLEQLTYHGTLLLSVEG-LESGYQDQVK---LPIVAR--GYD-GTKTTFAETRDMMVTG--GPPRIQQSPPESRAALSCDILDLGHVCVHTEHTRLVVLTNLSATATLSFAWDASHHLVHANRVRF-----FPMQGKLQPLEHCMVRVTI-APAADLVVIDHDIACWVR 1441
[Close]
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Match: A0A6S7GIH5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GIH5_PARCT)

HSP 1 Score: 96.7 bits (239), Expect = 9.570e-17
Identity = 85/314 (27.07%), Postives = 135/314 (42.99%), Query Frame = 1 
Query:    1 ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHDLPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPLAEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTIEGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDII-LRAVGYDPRTRDPHSEKLPRMDLGLVH-PPRQLEIPRGQYCVLGVERLRLGRIPQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGTLEQGQSALLQVN 936
            EL+Q   I   HLF   P  GT   ++A  SQ++ + Y     S  G++ LPVL +IT GR+  L+  G T+      V   +     ++  PV VG  LA  P+Q     N G    +Y +D   +   +  + YG  +F      GTI    +  + W F PLEAK Y++ + +R+             G    ++    +GYD R       K   +   +V  P RQ+     Q   L  ERL LG +P     +RV+ + N      + + W  ED+  +N      V+ I P  G ++     +L+++
Sbjct:  189 ELQQMQTIGH-HLFSVEPSSGT---LAAGHSQTVILRYKH---SIVGINRLPVLFKITRGREVLLNFSGVTVKADQPFVQFSSN---NFMFAPVPVG--LATPPIQDYAFYNGGSVNATYEIDLTPLDELH-KENYGCEIFTCLNPTGTIAPGKTALIHWVFEPLEAKTYIIDIPIRI------------LGCETSLVTFTGIGYDDRVMG----KTLYLGQHIVDIPTRQIASVGSQLSSLSEERLHLGLVPLRTKKTRVIFLSNNHSEHTISYRWILEDSPEQN------VVEIHPQYGIIKPRGDVVLKIS 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig473.11841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIG0_ECTSI2.200e-22246.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LMU0_9PHAE3.630e-19652.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2S9Y5_9STRA1.670e-2832.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836C958_9STRA1.930e-1945.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI00106B7D3B6.470e-1927.24cilia- and flagella-associated protein 65-like n=1... [more]
A0A1V9Z751_9STRA6.530e-1928.99Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6P8IY75_ACTTE1.250e-1728.38cilia- and flagella-associated protein 65-like n=1... [more]
A0A7R9YEH2_9STRA6.690e-1728.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A067CZB2_SAPPC8.760e-1728.11Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6S7GIH5_PARCT9.570e-1727.07Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig473contigH-elongata_contig473:15598..21160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score716.8
Seed ortholog evalue1.2e-203
Seed eggNOG ortholog2880.D7FIG0
Preferred nameCCDC108
EggNOG OGs2CMXN@1,2QSJW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000130.1
Exons14
Model size2742
Cds size2742
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig473.11841.1prot_H-elongata_contig473.11841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig473 15598..21160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.8424466-CDS-H-elongata_contig473:15597..157591622930780.8424466-CDS-H-elongata_contig473:15597..15759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 15598..15759 +
1691679567.2109444-CDS-H-elongata_contig473:15597..157591691679567.2109444-CDS-H-elongata_contig473:15597..15759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 15598..15759 +
1622930780.8823764-CDS-H-elongata_contig473:15997..160851622930780.8823764-CDS-H-elongata_contig473:15997..16085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 15998..16085 +
1691679567.2317214-CDS-H-elongata_contig473:15997..160851691679567.2317214-CDS-H-elongata_contig473:15997..16085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 15998..16085 +
1622930780.896092-CDS-H-elongata_contig473:16203..163701622930780.896092-CDS-H-elongata_contig473:16203..16370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 16204..16370 +
1691679567.2417562-CDS-H-elongata_contig473:16203..163701691679567.2417562-CDS-H-elongata_contig473:16203..16370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 16204..16370 +
1622930780.9105484-CDS-H-elongata_contig473:16554..167751622930780.9105484-CDS-H-elongata_contig473:16554..16775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 16555..16775 +
1691679567.251526-CDS-H-elongata_contig473:16554..167751691679567.251526-CDS-H-elongata_contig473:16554..16775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 16555..16775 +
1622930780.9286597-CDS-H-elongata_contig473:17071..172401622930780.9286597-CDS-H-elongata_contig473:17071..17240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17072..17240 +
1691679567.2681212-CDS-H-elongata_contig473:17071..172401691679567.2681212-CDS-H-elongata_contig473:17071..17240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17072..17240 +
1622930780.9466813-CDS-H-elongata_contig473:17366..175731622930780.9466813-CDS-H-elongata_contig473:17366..17573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17367..17573 +
1691679567.276322-CDS-H-elongata_contig473:17366..175731691679567.276322-CDS-H-elongata_contig473:17366..17573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17367..17573 +
1622930780.973681-CDS-H-elongata_contig473:17769..181621622930780.973681-CDS-H-elongata_contig473:17769..18162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17770..18162 +
1691679567.2846787-CDS-H-elongata_contig473:17769..181621691679567.2846787-CDS-H-elongata_contig473:17769..18162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 17770..18162 +
1622930780.9928346-CDS-H-elongata_contig473:18393..185131622930780.9928346-CDS-H-elongata_contig473:18393..18513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 18394..18513 +
1691679567.292586-CDS-H-elongata_contig473:18393..185131691679567.292586-CDS-H-elongata_contig473:18393..18513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 18394..18513 +
1622930781.0094767-CDS-H-elongata_contig473:18850..191061622930781.0094767-CDS-H-elongata_contig473:18850..19106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 18851..19106 +
1691679567.3008928-CDS-H-elongata_contig473:18850..191061691679567.3008928-CDS-H-elongata_contig473:18850..19106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 18851..19106 +
1622930781.0284855-CDS-H-elongata_contig473:19518..196731622930781.0284855-CDS-H-elongata_contig473:19518..19673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 19519..19673 +
1691679567.3088148-CDS-H-elongata_contig473:19518..196731691679567.3088148-CDS-H-elongata_contig473:19518..19673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 19519..19673 +
1622930781.0427794-CDS-H-elongata_contig473:19975..202301622930781.0427794-CDS-H-elongata_contig473:19975..20230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 19976..20230 +
1691679567.317417-CDS-H-elongata_contig473:19975..202301691679567.317417-CDS-H-elongata_contig473:19975..20230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 19976..20230 +
1622930781.05456-CDS-H-elongata_contig473:20277..204001622930781.05456-CDS-H-elongata_contig473:20277..20400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 20278..20400 +
1691679567.3261511-CDS-H-elongata_contig473:20277..204001691679567.3261511-CDS-H-elongata_contig473:20277..20400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 20278..20400 +
1622930781.0706267-CDS-H-elongata_contig473:20441..207231622930781.0706267-CDS-H-elongata_contig473:20441..20723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 20442..20723 +
1691679567.3358827-CDS-H-elongata_contig473:20441..207231691679567.3358827-CDS-H-elongata_contig473:20441..20723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 20442..20723 +
1622930781.0837219-CDS-H-elongata_contig473:21016..211601622930781.0837219-CDS-H-elongata_contig473:21016..21160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 21017..21160 +
1691679567.347979-CDS-H-elongata_contig473:21016..211601691679567.347979-CDS-H-elongata_contig473:21016..21160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig473 21017..21160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig473.11841.1

>prot_H-elongata_contig473.11841.1 ID=prot_H-elongata_contig473.11841.1|Name=mRNA_H-elongata_contig473.11841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=914bp
ELRQNDIIERLHLFDFSPDPGTVIEMSAAESQSLTIFYSTDSLSYKGVHD
LPVLVRITEGRQFWLDLKGTTLPRGYSMVYVPTGLKKQYVLEPVAVGTPL
AEAPMQLTELVNVGDATVSYLVDECAIKRANISQGYGVSVFRLEEKCGTI
EGRSSGFLRWRFLPLEAKEYVLKVTVRMESRIENQPEEEQKGQSLDIILR
AVGYDPRTRDPHSEKLPRMDLGLVHPPRQLEIPRGQYCVLGVERLRLGRI
PQGAVFSRVVSIRNCLLTTAVEFSWDPEDTGVENSMVSFGVICISPSKGT
LEQGQSALLQVNICALCGPRFLVQHPVACILRPRPPTPASRSRKPTSRLQ
SRMEQEKQARARAPDPRVPVVSRPTASRTIYMAELAKKFSHRRNSGDSER
VVAPRYPTSTLNTPVPCVLVEALETGDPDCLNNERARTASSRRINHHVDG
QDEAGSGLDGSVKDVGSSQGLTQRASSASQSTSLGNSSEGQRLLAGGGAC
FVRLVIEGEVVCRETFHELFRGRGEAHRRTDVSKDIIDGRVDVRHYDNSS
AMDTFFIPHPPDYVPDWPAFGPGDRNELESNYGKSERNGKLSSIRGASQD
SLAEDVTSRVLKRLMRDVVMTDAVRGCFMALPVKARIPTFREVRQALPPP
RPDAVVAVIASASLSNDQRINRNTSLEKPRLLLAISAAESAVVSTGPCAE
TNGANRQAWKAAQGERCITQPRGALAELVAALGLVIGMQASFRAGKPSTT
SVGSGRWPFSKLVAIQSCRMPIVILENLISSLDKITVRSLGKWLDRVDID
TQSGPTTNKTLDLMPARSAIQATTPSGERLTVEGRSAREDLPASITVSEA
MGSSEENKAAVIIQAQARRLQAVQIAEDAAKKRRCRLVDEALMNPKVQRT
LAAALEGTFFNLIQ
back to top

mRNA from alignment at H-elongata_contig473:15598..21160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig473.11841.1 ID=mRNA_H-elongata_contig473.11841.1|Name=mRNA_H-elongata_contig473.11841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5563bp|location=Sequence derived from alignment at H-elongata_contig473:15598..21160+ (Himanthalia elongata Himel1 dioecious)
GAATTGCGACAAAACGACATCATCGAAAGACTCCACTTGTTTGATTTTTC
TCCTGATCCGGGGACCGTCATCGAGATGTCAGCAGCGGAGTCTCAGTCGT
TGACGATATTCTACAGCACAGACTCTCTGTCCTACAAAGGAGTGCACGAC
CTACCCGTGCTGGTCAGTTTGTGTGGCAAAGAAGCCTTAGATGGCCTGAA
CTCCGTAACCATTTTTGCTACAGGTGTGAAGGTGATTCTTGACCGTATAT
GCCGAGCGAGCCTACCAAGCATTATTGGCAGGAAAACCGTAGAGTAGCCT
CGTATGGGCATGTCATGTCCACGAACGTAAACCCTACCTGGTAGACCGCA
CCCTTCAGTGAGACGCACTCGTTGTCGCCTCTTGACGTACTTTTCTGCAG
GTGCGCATTACAGAAGGTCGACAGTTTTGGTTGGACCTGAAAGGAACCAC
GCTGCCTCGTGGATATTCCATGGTTTACGTACCCACCGGTATAACTAACT
GCCTGTCGACCTTGCGTTAAAGTACCGTAGACGGCCTCGCATGGATGCCG
AGAGTATAGCACAAGTTGTAATCACTGCCTTCGCCGGGTTTGCTTCTCTG
GGACAGGTTTGAAAAAACAGTACGTGCTTGAGCCCGTAGCCGTGGGTACT
CCTTTAGCCGAGGCGCCCATGCAGTTAACAGAGCTTGTTAATGTCGGAGA
TGCGACAGTTTCATACCTGGTTGATGAATGCGCCATCAAACGGGCCAATA
TATCGCAAGGGTATGGCGTGTCGGTAAGCATTATCGCGAGCTTAGCATAC
CCTCAGCGGCACTTCTCGTTCAAGGAGATTAGTTTGCGCTCGAAGATGAT
TTTGTCTCAAGCCAGAGTATAAGTGAACGTCGGGTGCAGGGTAAGAGTGA
ATTAATTGTATTAGGCATATGACTACCTCATCGCTGCCATACACGTCTAC
AAAGCAGGTGTTCAGGTTGGAAGAAAAATGTGGAACGATTGAGGGCCGCT
CTTCAGGCTTCCTAAGGTGGCGCTTTTTGCCCTTGGAGGCGAAGGAATAC
GTGCTCAAAGTTACAGTACGGATGGAGTCAAGAATCGAAAACCAGCCCGA
AGAAGAGCAGAAAGGACAATCCCTAGACATCATCCTGAGGGCAGTGGGAT
ATGATCCCAGGACACGTGATCCTCACAGGTGAAAATCAACGACTTCTATA
ATAGTCAAGATGTAGGGCTCTCCGCCAACAAGTTGAACGTTCATATCAAT
CAGAGCGTGTTCCAAATCAGTGGAGTTTCATTTCGGTCTCCTTTTTTCGT
AGTTCGTGGTGATGTACTGTACATACAAAGAAAACAAACAAATGAAGGCA
TTTTATGCGGAGGGACGTCGCACGTGGTCTTGAGGATGTGAACTATCGCA
TCCGCGTGGAATTGCGCCCGCCGAACAAGTAGTCTTCCTCTTAGTGCCTA
ATGCACGCCCGGCCGTACGCCCAGCGAAAAGCTGCCTCGAATGGACCTTG
GACTGGTACACCCGCCTCGACAGCTGGAGATACCGCGGGGGCAATACTGC
GTATTAGGTGTGGAAAGGCTTCGTCTCGGCAGAATTCCACAGGGAGCAGT
GTTCTCCCGTGTGGTTTCCATCAGAAACTGCCTTTTGACTACGGTGAGTG
CAGTTATGTTTACGTTTAGGCTTCAATTATTTTTAATATCGCCGCGGTGT
GTTCCGTCAAAAATGTCCTAAGAAGTAATTGAGAAAAATCGTAGAAACCC
CCGTGTTCAACCCGCACAGGCGGTCGAATTTAGCTGGGATCCCGAGGACA
CTGGGGTAGAGAACTCCATGGTATCCTTTGGCGTGATATGCATAAGCCCC
TCAAAGGGCACCTTGGAACAAGGGCAATCCGCGTTGTTGCAAGTGAACAT
ATGCGCGTTATGCGGCCCGCGATTCCTGGTTCAGCATCCAGTAGCATGTA
TTCTGCGGCCAAGGCCTCCGACCCCGGTGAGAAATTTGCTTTCGTGCTAG
TTCAGATGCATGAAGATCGAAGAAATATAGAGGGTTAAGAAGGAAGTGGG
GGGGGTAGGACTGTCATGCTATAGTAAATGTAAGTTGGGATTGCAGGTAA
TAGCCAAAATCCCAATAACATTTCGGAGCTAACGGGTGCTCCTTCGTCTG
AAACACTCTTTGCTTTTACCAGGCTTCGCGATCTAGGAAGCCAACATCCC
GACTGCAGAGCCGTATGGAGCAGGAGAAGCAGGCCCGCGCGAGAGCTCCT
GATCCGCGAGTGCCTGTGGTATCGCGTCCAACCGCTTCCAGAACCATCTA
CATGGCCGAACTCGCCAAGAAGTTTTCTCATCGTCGCAACAGTGGTGACA
GCGAGCGGGTAGTGGCTCCACGCTATCCAACTTCTACTCTCAATACACCA
GTCCCGTGTGTATTGGTGGAAGCTCTAGAAACCGGTGATCCAGATTGCCT
AAATAATGAGAGGGCTAGAACGGCCTCATCTCGAAGAATCAATCACCATG
TTGATGGCCAGGATGAAGCGGGATCGGGTTTGGATGGCAGCGTAAAGGAC
GTTGGGTCATCGCAGGTATGCTCCGCTGCCCTTTCGTCGAAGTAGCTTAA
ACTCGCAGCCCCTCATTCCCGCTTATTTCTGGCATCAAACGGTGAACGCT
TCTGGGCTTTTATGAGTCCACGCTAACGCTGACCCTGATTTTCACTAGAT
GCGCGCTAACAACTACTATAGTACCCGGTTGATGATAATAAATATTCCGC
ATGGTGCGACCTGGTGTAATATACTATATCGCCGTGCGCGATAAAGGGGC
TCACACAGAGAGCTTCGAGTGCAAGCCAGAGCACCAGCCTAGGCAACAGC
AGCGAAGGGCAACGGCTGTTGGCGGGCGGTGGCGCGTGTTTCGTTCGCCT
AGTGATCGAAGGAGAGGTGCGCTCGTGGCTATGATATATACCGATGTAAA
GAAGGTGTGGATGTTCGGAGGGTTTGGATGAGTTCAGATGTTTAAAAGAA
AAATATACAGAGTACCACTGTAGATTAGCCGGTCCCTTGCGAATGCAGCC
CTCAAAGTTTTCTCGGCTTCATGGGCAAATCAGACCCAGTAAGGATCCAC
AAACTACAAGATGGGATGTTCATGAGTCATAGGCTTCGGGATATTTAAGA
CTAAGCGCTCAACCTTGTCGACCCCTCGAAAAAATATTCGTTTTCGAAAT
CGGGTTGCTTCATAGGAGAATGCTCCAAAGTAATTTTCCAATCGCATCTC
CAGGTGGTGTGCCGCGAGACCTTCCACGAGCTGTTCAGGGGCCGTGGCGA
GGCTCACCGGCGTACAGATGTTTCCAAAGACATCATAGACGGACGTGTCG
ACGTCCGCCATTATGATAACAGCTCGGCGATGGACACATTCTTCATCCCC
CATCCTCCAGATTATGTGCCAGACTGGCCTGCGTTTGGACCAGGAGATCG
GAATGAACTTGAAAGCAACTACGGGAAAAGCGAGCGAAATGGAAAATTGT
CCTCGATAAGTCTATCGACAACGAAGGAGAGGACCAGCGACGGGGTATGC
TTTATTGCGATGTATCGTAGGTCAACTTGCTTGTTTTGGTACTTACATAA
GGGAAAATACTATTTCACTCTTGCTTCGTCCCTAGCGGCTTTAGTTTGCT
GCAAGCCAATAAAAAACATATAACGCTGTTTGTACGTTGTATTTAGAACT
AAACTGCACATCATGTAGTATGCTTACATATCAGAATAGCTCGAGCCTGG
CTATAGTTCACTGGTCATGCAGCTCTTCGGTAGGAAGCATATTCAGTCTG
AAAAACTGGTTCACGCATCGCCTGGCCGTCTCTGTGTATAATATGTCACG
GGCCCTTTCCGTATGTCTGAACTCCAACGTTCCGCACGGTGGCGTCCACG
TTTTGCGGGAGTAGTTGTTAGGGGGCGCAAGCCAAGATTCATTGGCCGAA
GACGTAACCTCTCGAGTCCTGAAGCGACTTATGAGAGATGTGGTGATGAC
AGATGCGGTCAGGGGGTGCTTCATGGCCCTTCCGGTCAAAGCGCGGATTC
CAACATTCAGGGAGGTGCGCCAAGCCGTAATGATGAGCGCTCGATATTTC
TATGGCAGGAATACCCAAGGAATGTAGAGATAATCTCGAAATTAAACGAT
TCCAATATCCAAATTGAGCCGCTCATTTACTGATAGGACGTCTCGATTAA
TCGACTTAGGTAAAGTGTCTCGGCGGAGAATATGCGCATATACTCGGTAA
TCTACACATTTAAGTAACAGCATCGTATACACTCCGGATGCTGCTATGTA
CAGATTCGCAGCGACCTTTCTCTGCCCGACCGTTTGGCGACAGTACTGAC
GACGCATTTGCAAGGCAGCCATGTTCAGCTCCCTCCGCCAAGACCTGACG
CGGTGGTTGCTGTTATTGCTTCGGCGAGCCTGAGCAACGACCAACGGATA
AATCGCAACACTTCGTTAGAAAAACCCCGTCTCCTCTTGGCGATCAGTGC
CGCTGAGTCAGCTGTAGTATCGACTGGACCATGTGCTGAGACAAACGGTG
CGAACAGGCAGGCTTGGAAGGCAGCTCAAGGAGAACGATGTATCACACAG
CCGAGGGGAGCTTTGGCGGAGCTGGTAGCTGCAGTAGAGGTACGCACATT
ATCAATTCTACATATTCGTGGTCTCTGGAGCTTGGCTTGGTCATCGGCAT
GCAAGCATCCTTCCGGGCGGGCAAACCGTCTACAACCTCGGTTGGTTCCG
GTAGGTGGCCTTTTTCGAAATTGGTCGCTATTCAGAGCTGTCGCATGCCC
ATCGTAATCCATCATCATCTGCACAGAATTTTCCGATGAAGGAGGTGATC
CTGGAGAACCTAATATCGTCTCTAGACAAGATTACAGTTCGCTCTCTTGG
TAAATGGCTGGATCGCGTGGATATCGATACACAAAGCGGCCCAACAACGA
ATAAGACCCTCGATCTGATGCCAGCTCGAAGCGCGATCCAAGCCACCACG
CCAAGTGGAGAACGCTTGACTGTTGAAGGCAGGAGCGCGCGTGAAGACCT
GCCTGCTTCCATCACAGTTTCTGAGGCAATGGGAAGCTCCGAGGAGAATA
AAGCCGCCGTGATTATTCAAGCTCAGGTGTGGAAGAGATGCGATTAGAAA
TATATCAAGACTACGGGGAACTGAGGGTAGATATCAAGGCTTTTCTAATC
GGAGCAGTAGAAAGTCAAAGCTCACGAGGCATCGTTCCCTCCTCCGTTCA
TAACCGTTCTAGCTGCTCGTTTATATTCGCACGCTTACGTTAGGTTGCCT
CGAGCGGGCGGTGCCTTGATATTTAACGCACATAGCCTTGGATATGGCAA
TGTGGACAAGTAGTATTCATTATGACCTCCTGATGCCGCCTCGGCCGTGT
CGCGCTCATGATTCAAAAGGCTCGTCGCCTACAAGCAGTACAAATTGCGG
AGGATGCAGCAAAGAAGCGACGCTGTCGTTTGGTCGACGAAGCCTTGATG
AACCCGAAGGTTCAGCGAACGTTGGCAGCCGCTCTCGAGGGGACGTTTTT
CAATCTGATACAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig473:15598..21160+

>mRNA_H-elongata_contig473.11841.1 ID=mRNA_H-elongata_contig473.11841.1|Name=mRNA_H-elongata_contig473.11841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5484bp|location=Sequence derived from alignment at H-elongata_contig473:15598..21160+ (Himanthalia elongata Himel1 dioecious)
GAATTGCGACAAAACGACATCATCGAAAGACTCCACTTGTTTGATTTTTC
TCCTGATCCGGGGACCGTCATCGAGATGTCAGCAGCGGAGTCTCAGTCGT
TGACGATATTCTACAGCACAGACTCTCTGTCCTACAAAGGAGTGCACGAC
CTACCCGTGCTGGAATTGCGACAAAACGACATCATCGAAAGACTCCACTT
GTTTGATTTTTCTCCTGATCCGGGGACCGTCATCGAGATGTCAGCAGCGG
AGTCTCAGTCGTTGACGATATTCTACAGCACAGACTCTCTGTCCTACAAA
GGAGTGCACGACCTACCCGTGCTGGTGCGCATTACAGAAGGTCGACAGTT
TTGGTTGGACCTGAAAGGAACCACGCTGCCTCGTGGATATTCCATGGTTT
ACGTACCCACCGGTGCGCATTACAGAAGGTCGACAGTTTTGGTTGGACCT
GAAAGGAACCACGCTGCCTCGTGGATATTCCATGGTTTACGTACCCACCG
GTTTGAAAAAACAGTACGTGCTTGAGCCCGTAGCCGTGGGTACTCCTTTA
GCCGAGGCGCCCATGCAGTTAACAGAGCTTGTTAATGTCGGAGATGCGAC
AGTTTCATACCTGGTTGATGAATGCGCCATCAAACGGGCCAATATATCGC
AAGGGTATGGCGTGTCGGTTTGAAAAAACAGTACGTGCTTGAGCCCGTAG
CCGTGGGTACTCCTTTAGCCGAGGCGCCCATGCAGTTAACAGAGCTTGTT
AATGTCGGAGATGCGACAGTTTCATACCTGGTTGATGAATGCGCCATCAA
ACGGGCCAATATATCGCAAGGGTATGGCGTGTCGGTGTTCAGGTTGGAAG
AAAAATGTGGAACGATTGAGGGCCGCTCTTCAGGCTTCCTAAGGTGGCGC
TTTTTGCCCTTGGAGGCGAAGGAATACGTGCTCAAAGTTACAGTACGGAT
GGAGTCAAGAATCGAAAACCAGCCCGAAGAAGAGCAGAAAGGACAATCCC
TAGACATCATCCTGAGGGCAGTGGGATATGATCCCAGGACACGTGATCCT
CACAGGTGTTCAGGTTGGAAGAAAAATGTGGAACGATTGAGGGCCGCTCT
TCAGGCTTCCTAAGGTGGCGCTTTTTGCCCTTGGAGGCGAAGGAATACGT
GCTCAAAGTTACAGTACGGATGGAGTCAAGAATCGAAAACCAGCCCGAAG
AAGAGCAGAAAGGACAATCCCTAGACATCATCCTGAGGGCAGTGGGATAT
GATCCCAGGACACGTGATCCTCACAGCGAAAAGCTGCCTCGAATGGACCT
TGGACTGGTACACCCGCCTCGACAGCTGGAGATACCGCGGGGGCAATACT
GCGTATTAGGTGTGGAAAGGCTTCGTCTCGGCAGAATTCCACAGGGAGCA
GTGTTCTCCCGTGTGGTTTCCATCAGAAACTGCCTTTTGACTACGCGAAA
AGCTGCCTCGAATGGACCTTGGACTGGTACACCCGCCTCGACAGCTGGAG
ATACCGCGGGGGCAATACTGCGTATTAGGTGTGGAAAGGCTTCGTCTCGG
CAGAATTCCACAGGGAGCAGTGTTCTCCCGTGTGGTTTCCATCAGAAACT
GCCTTTTGACTACGGCGGTCGAATTTAGCTGGGATCCCGAGGACACTGGG
GTAGAGAACTCCATGGTATCCTTTGGCGTGATATGCATAAGCCCCTCAAA
GGGCACCTTGGAACAAGGGCAATCCGCGTTGTTGCAAGTGAACATATGCG
CGTTATGCGGCCCGCGATTCCTGGTTCAGCATCCAGTAGCATGTATTCTG
CGGCCAAGGCCTCCGACCCCGGCGGTCGAATTTAGCTGGGATCCCGAGGA
CACTGGGGTAGAGAACTCCATGGTATCCTTTGGCGTGATATGCATAAGCC
CCTCAAAGGGCACCTTGGAACAAGGGCAATCCGCGTTGTTGCAAGTGAAC
ATATGCGCGTTATGCGGCCCGCGATTCCTGGTTCAGCATCCAGTAGCATG
TATTCTGCGGCCAAGGCCTCCGACCCCGGCTTCGCGATCTAGGAAGCCAA
CATCCCGACTGCAGAGCCGTATGGAGCAGGAGAAGCAGGCCCGCGCGAGA
GCTCCTGATCCGCGAGTGCCTGTGGTATCGCGTCCAACCGCTTCCAGAAC
CATCTACATGGCCGAACTCGCCAAGAAGTTTTCTCATCGTCGCAACAGTG
GTGACAGCGAGCGGGTAGTGGCTCCACGCTATCCAACTTCTACTCTCAAT
ACACCAGTCCCGTGTGTATTGGTGGAAGCTCTAGAAACCGGTGATCCAGA
TTGCCTAAATAATGAGAGGGCTAGAACGGCCTCATCTCGAAGAATCAATC
ACCATGTTGATGGCCAGGATGAAGCGGGATCGGGTTTGGATGGCAGCGTA
AAGGACGTTGGGTCATCGCAGGCTTCGCGATCTAGGAAGCCAACATCCCG
ACTGCAGAGCCGTATGGAGCAGGAGAAGCAGGCCCGCGCGAGAGCTCCTG
ATCCGCGAGTGCCTGTGGTATCGCGTCCAACCGCTTCCAGAACCATCTAC
ATGGCCGAACTCGCCAAGAAGTTTTCTCATCGTCGCAACAGTGGTGACAG
CGAGCGGGTAGTGGCTCCACGCTATCCAACTTCTACTCTCAATACACCAG
TCCCGTGTGTATTGGTGGAAGCTCTAGAAACCGGTGATCCAGATTGCCTA
AATAATGAGAGGGCTAGAACGGCCTCATCTCGAAGAATCAATCACCATGT
TGATGGCCAGGATGAAGCGGGATCGGGTTTGGATGGCAGCGTAAAGGACG
TTGGGTCATCGCAGGGGCTCACACAGAGAGCTTCGAGTGCAAGCCAGAGC
ACCAGCCTAGGCAACAGCAGCGAAGGGCAACGGCTGTTGGCGGGCGGTGG
CGCGTGTTTCGTTCGCCTAGTGATCGAAGGAGAGGGGCTCACACAGAGAG
CTTCGAGTGCAAGCCAGAGCACCAGCCTAGGCAACAGCAGCGAAGGGCAA
CGGCTGTTGGCGGGCGGTGGCGCGTGTTTCGTTCGCCTAGTGATCGAAGG
AGAGGTGGTGTGCCGCGAGACCTTCCACGAGCTGTTCAGGGGCCGTGGCG
AGGCTCACCGGCGTACAGATGTTTCCAAAGACATCATAGACGGACGTGTC
GACGTCCGCCATTATGATAACAGCTCGGCGATGGACACATTCTTCATCCC
CCATCCTCCAGATTATGTGCCAGACTGGCCTGCGTTTGGACCAGGAGATC
GGAATGAACTTGAAAGCAACTACGGGAAAAGCGAGCGAAATGGAAAATTG
TCCTCGATAAGTGGTGTGCCGCGAGACCTTCCACGAGCTGTTCAGGGGCC
GTGGCGAGGCTCACCGGCGTACAGATGTTTCCAAAGACATCATAGACGGA
CGTGTCGACGTCCGCCATTATGATAACAGCTCGGCGATGGACACATTCTT
CATCCCCCATCCTCCAGATTATGTGCCAGACTGGCCTGCGTTTGGACCAG
GAGATCGGAATGAACTTGAAAGCAACTACGGGAAAAGCGAGCGAAATGGA
AAATTGTCCTCGATAAGGGGCGCAAGCCAAGATTCATTGGCCGAAGACGT
AACCTCTCGAGTCCTGAAGCGACTTATGAGAGATGTGGTGATGACAGATG
CGGTCAGGGGGTGCTTCATGGCCCTTCCGGTCAAAGCGCGGATTCCAACA
TTCAGGGAGGTGCGCCAAGCCGGGGCGCAAGCCAAGATTCATTGGCCGAA
GACGTAACCTCTCGAGTCCTGAAGCGACTTATGAGAGATGTGGTGATGAC
AGATGCGGTCAGGGGGTGCTTCATGGCCCTTCCGGTCAAAGCGCGGATTC
CAACATTCAGGGAGGTGCGCCAAGCCCTCCCTCCGCCAAGACCTGACGCG
GTGGTTGCTGTTATTGCTTCGGCGAGCCTGAGCAACGACCAACGGATAAA
TCGCAACACTTCGTTAGAAAAACCCCGTCTCCTCTTGGCGATCAGTGCCG
CTGAGTCAGCTGTAGTATCGACTGGACCATGTGCTGAGACAAACGGTGCG
AACAGGCAGGCTTGGAAGGCAGCTCAAGGAGAACGATGTATCACACAGCC
GAGGGGAGCTTTGGCGGAGCTGGTAGCTGCACTCCCTCCGCCAAGACCTG
ACGCGGTGGTTGCTGTTATTGCTTCGGCGAGCCTGAGCAACGACCAACGG
ATAAATCGCAACACTTCGTTAGAAAAACCCCGTCTCCTCTTGGCGATCAG
TGCCGCTGAGTCAGCTGTAGTATCGACTGGACCATGTGCTGAGACAAACG
GTGCGAACAGGCAGGCTTGGAAGGCAGCTCAAGGAGAACGATGTATCACA
CAGCCGAGGGGAGCTTTGGCGGAGCTGGTAGCTGCACTTGGCTTGGTCAT
CGGCATGCAAGCATCCTTCCGGGCGGGCAAACCGTCTACAACCTCGGTTG
GTTCCGGTAGGTGGCCTTTTTCGAAATTGGTCGCTATTCAGAGCTGTCGC
ATGCCCATCCTTGGCTTGGTCATCGGCATGCAAGCATCCTTCCGGGCGGG
CAAACCGTCTACAACCTCGGTTGGTTCCGGTAGGTGGCCTTTTTCGAAAT
TGGTCGCTATTCAGAGCTGTCGCATGCCCATCGTGATCCTGGAGAACCTA
ATATCGTCTCTAGACAAGATTACAGTTCGCTCTCTTGGTAAATGGCTGGA
TCGCGTGGATATCGATACACAAAGCGGCCCAACAACGAATAAGACCCTCG
ATCTGATGCCAGCTCGAAGCGCGATCCAAGCCACCACGCCAAGTGGAGAA
CGCTTGACTGTTGAAGGCAGGAGCGCGCGTGAAGACCTGCCTGCTTCCAT
CACAGTTTCTGAGGCAATGGGAAGCTCCGAGGAGAATAAAGCCGCCGTGA
TTATTCAAGCTCAGGTGATCCTGGAGAACCTAATATCGTCTCTAGACAAG
ATTACAGTTCGCTCTCTTGGTAAATGGCTGGATCGCGTGGATATCGATAC
ACAAAGCGGCCCAACAACGAATAAGACCCTCGATCTGATGCCAGCTCGAA
GCGCGATCCAAGCCACCACGCCAAGTGGAGAACGCTTGACTGTTGAAGGC
AGGAGCGCGCGTGAAGACCTGCCTGCTTCCATCACAGTTTCTGAGGCAAT
GGGAAGCTCCGAGGAGAATAAAGCCGCCGTGATTATTCAAGCTCAGGCTC
GTCGCCTACAAGCAGTACAAATTGCGGAGGATGCAGCAAAGAAGCGACGC
TGTCGTTTGGTCGACGAAGCCTTGATGAACCCGAAGGTTCAGCGAACGTT
GGCAGCCGCTCTCGAGGGGACGTTTTTCAATCTGATACAGGCTCGTCGCC
TACAAGCAGTACAAATTGCGGAGGATGCAGCAAAGAAGCGACGCTGTCGT
TTGGTCGACGAAGCCTTGATGAACCCGAAGGTTCAGCGAACGTTGGCAGC
CGCTCTCGAGGGGACGTTTTTCAATCTGATACAG
back to top