mRNA_H-elongata_contig114840.1184.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.970e-14 Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 1 KRGCKSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKL 279
KR S IK+ G +LRD I RW WF +LLN KSP ++ D +++ P PL P+L EV+EAV ++ N KAVG+D++ EL+KL
Sbjct: 52 KRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKL 144
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E) HSP 1 Score: 69.3 bits (168), Expect = 9.920e-12 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 16 STCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
S IK+ +G LL K +L RW E F LLNV A + L + +LP+ LV P+L+EV EA+ +N KAVGVDN+ GELLK G
Sbjct: 452 SVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDRLA-DFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE) HSP 1 Score: 62.4 bits (150), Expect = 1.800e-10 Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 13 KSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPA--LNASILDGIE---QLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
+ST ++N +G L K + W E F+E+ N + PA + + +G E + E A V EPT+ EVKEAV KL+NGKA+G+DN+ ELLK
Sbjct: 18 QSTAVENKNGNFLSMKSEVQATWMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIA--VNEPTIGEVKEAVKKLKNGKALGIDNITAELLK 108
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A818VPA9_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818VPA9_9BILA) HSP 1 Score: 61.2 bits (147), Expect = 7.050e-9 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS-------PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
I+N G LL + ++LRW+E+F +LLNV S ++ I+ EQ+ + P P+L EV +A+ +++N KA GVDN+ +LLK G
Sbjct: 363 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQISVPIISTTEQMRQDKP----PSLSEVHDAIKQMKNRKAPGVDNISADLLKAG 451
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA) HSP 1 Score: 60.5 bits (145), Expect = 1.260e-8 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 19 TCIKNASGV-LLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
T +K A G+ +L+D+ S+L RW E F LLN S A + +ILD + +LP L PT EV AV L+N K+ G+DN+ ELLK G
Sbjct: 41 TPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELLKQG 128
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A336M488_CULSO (CSON002588 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336M488_CULSO) HSP 1 Score: 60.5 bits (145), Expect = 1.280e-8 Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
+K+ +GVLL + L RW+E FQE+LN++ + + + LP + PT +E+ +A+ L+NGKA G+D++ E+LK
Sbjct: 432 VKDKNGVLLTNVEDQLKRWREHFQEVLNLRRDGIEVPQIRAVRTLPIRT---SPPTKKEITDAIKSLKNGKAAGIDSITAEVLK 512
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A8K0NUE5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NUE5_LADFU) HSP 1 Score: 59.3 bits (142), Expect = 2.090e-8 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
IK+ASGV++R+ + RWKE+F +LLN ++P L DG E V + + EVK A+ K++NGKAVG D + E+ K
Sbjct: 118 IKDASGVIIREDGDVRKRWKEYFHKLLNEENPRLRNEEGDGNELA------VQDMSRVEVKAALKKVKNGKAVGADQIPVEIRK 195
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A817QYR2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817QYR2_9BILA) HSP 1 Score: 59.3 bits (142), Expect = 3.060e-8 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS---PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
I+N G LL + ++LRW+E+F +LLNV S P + IL I E P+L EV +A+ +++N KA GVDN+ +LLK G
Sbjct: 239 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQILVPIISTTEQMRQDKPPSLSEVHDAIKQMKNRKAPGVDNISVDLLKAG 327
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A817NW72_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NW72_9BILA) HSP 1 Score: 59.3 bits (142), Expect = 3.270e-8 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS---PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
I+N G LL + ++LRW+E+F +LLNV S P + IL I E P+L EV +A+ +++N KA GVDN+ +LLK G
Sbjct: 239 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQILVPIISTTEQMRQDKPPSLSEVHDAIKQMKNRKAPGVDNISVDLLKAG 327
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A5J4N3A9_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N3A9_9TREM) HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7 Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 25 IKNASGVLLRDKPSILLRWKEWFQELLNV---KSPALNASILDGIEQL-PEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
+KN G LL + +L RW+E+F+ELLNV + ++ GI E P+V+ + EV+EAVGK++ GKA G+D + E+LK G
Sbjct: 290 VKNRRGELLNGELEVLGRWREYFEELLNVDEDREAVISCIGQGGITSCRSEEEPVVS---VGEVREAVGKMKGGKAAGIDGIKIEMLKAG 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114840.1184.1 >prot_H-elongata_contig114840.1184.1 ID=prot_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp KRGCKSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIback to top mRNA from alignment at H-elongata_contig114840:1794..2075+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114840.1184.1 ID=mRNA_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig114840:1794..2075+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114840:1794..2075+ >mRNA_H-elongata_contig114840.1184.1 ID=mRNA_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig114840:1794..2075+ (Himanthalia elongata Himel1 dioecious)back to top |