|
|
Homology
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI) HSP 1 Score: 238 bits (606), Expect = 2.660e-67 Identity = 165/271 (60.89%), Postives = 186/271 (68.63%), Query Frame = 1
Query: 1 RQLTMDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANLHAAAEEEIARRKAGGKEMARSAEGGRTEAGKGRIYAASKATATRDLARERENAVVAXXXXXXXXXXXXXXXXXXXRGADGSTGVVDPLLA----------SGAADSAVVTVPDVSSLTGSGEGARRCGNEE-YEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAALAAPPP 780
+ L MD WD QV RMELGGN QL+AWF +C+TENSALEMKYRTKAATLYR NL AA+E++A +GG + A +G + KGRI+AA++ A LA+E XXXXXXXXXXXXXX R S+ P+ A +GAA V S G E ARRCG EE YEVVFG GG+GFTLMKDAVSRALVTRLAPGG AF LGVRTGDYLVGV G RL DYD+LM+LLPR PRPLRLLFEGAGAALAA PP
Sbjct: 38 KSLAMDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYRENLRVAADEDLA---SGGGQAAGELQGA-PGSRKGRIFAAAERAAASSLAQEEAXXXXXXXXXXXXXXXXXXXRREAERAGALSSAAQVPVAARHDPPSAHAGAGAAPGGATAAATVGS--GMEEYARRCGREEEYEVVFGPGGMGFTLMKDAVSRALVTRLAPGGMAFRLGVRTGDYLVGVDGRRLHDYDQLMLLLPRTPRPLRLLFEGAGAALAASPP 302
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.020e-11 Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 RQLTMDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANL 162
R LT+D W+ + ++LGGN QL +W RCK +NSA+E+KYRTKAATLYR L
Sbjct: 18 RSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 71
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A7R9U3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N9_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 8.460e-7 Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 439 AADSAVVTVPDVSS--LTGSGEGARRCGNEEYEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLF------EGAGA 759
AA +A+ P+ +S +T G + R G ++ FG G +G L + RA V+ + P G A G+R GD++ GV+G R+ DYD++M L+ R RP+ + F +GAG+
Sbjct: 134 AAAAALGDAPEAASRSVTAPGGSSGRDGVQDVWCSFGEGRMGLRLTRAKNMRATVSMITPNGNADVQGLRVGDFVCGVNGKRVGDYDEVMELVQRLKRPVSITFRRITRCDGAGS 248
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A835YRV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 6.730e-6 Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 526 YEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLF 744
Y+V FG G LGFT++K +V ++ P A GV GD +V ++ R+ YD++M +LP PRP+ + F
Sbjct: 361 YDVTFGDGRLGFTMLKSEQGLGVVCKVQPDSTAASAGVSPGDTVVAINRRRMSSYDEVMSVLPSMPRPVLVTF 433
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.180e-5 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 583 SRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAALAA 771
S ALVT++ G A GVR GDY+V ++G DYD+++ L RAPRPLRL G +A
Sbjct: 198 SMALVTKVVTNGPAHSAGVRVGDYVVALNGRPATDYDEVVALFARAPRPLRLTVRRFGGDASA 260
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 245.0 |
| Seed ortholog evalue | 5e-62 |
| Seed eggNOG ortholog | 2880.D7G861 |
| KEGG ko | ko:K12492,ko:K12493,ko:K14480 |
| KEGG Pathway | ko04144,map04144 |
| EggNOG free text desc. | GTPase activator activity |
| EggNOG OGs | COG5347@1,KOG0706@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 993 |
| Cds size | 981 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930779.6095967-CDS-H-elongata_contig47238:1273..1433 | 1622930779.6095967-CDS-H-elongata_contig47238:1273..1433 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 1274..1433 - |
| 1691679566.6547132-CDS-H-elongata_contig47238:1273..1433 | 1691679566.6547132-CDS-H-elongata_contig47238:1273..1433 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 1274..1433 - |
| 1622930779.6303182-CDS-H-elongata_contig47238:1508..1695 | 1622930779.6303182-CDS-H-elongata_contig47238:1508..1695 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 1509..1695 - |
| 1691679566.6737523-CDS-H-elongata_contig47238:1508..1695 | 1691679566.6737523-CDS-H-elongata_contig47238:1508..1695 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 1509..1695 - |
| 1622930779.6450775-CDS-H-elongata_contig47238:2116..2231 | 1622930779.6450775-CDS-H-elongata_contig47238:2116..2231 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 2117..2231 - |
| 1691679566.6847563-CDS-H-elongata_contig47238:2116..2231 | 1691679566.6847563-CDS-H-elongata_contig47238:2116..2231 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 2117..2231 - |
| 1622930779.657036-CDS-H-elongata_contig47238:2749..2971 | 1622930779.657036-CDS-H-elongata_contig47238:2749..2971 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 2750..2971 - |
| 1691679566.69568-CDS-H-elongata_contig47238:2749..2971 | 1691679566.69568-CDS-H-elongata_contig47238:2749..2971 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 2750..2971 - |
| 1622930779.673923-CDS-H-elongata_contig47238:3513..3670 | 1622930779.673923-CDS-H-elongata_contig47238:3513..3670 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 3514..3670 - |
| 1691679566.7113428-CDS-H-elongata_contig47238:3513..3670 | 1691679566.7113428-CDS-H-elongata_contig47238:3513..3670 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 3514..3670 - |
| 1622930779.6877122-CDS-H-elongata_contig47238:3983..4123 | 1622930779.6877122-CDS-H-elongata_contig47238:3983..4123 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 3984..4123 - |
| 1691679566.7224333-CDS-H-elongata_contig47238:3983..4123 | 1691679566.7224333-CDS-H-elongata_contig47238:3983..4123 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig47238 3984..4123 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930779.7052474-UTR-H-elongata_contig47238:4123..4135 | 1622930779.7052474-UTR-H-elongata_contig47238:4123..4135 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig47238 4124..4135 - |
| 1691679566.7343369-UTR-H-elongata_contig47238:4123..4135 | 1691679566.7343369-UTR-H-elongata_contig47238:4123..4135 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig47238 4124..4135 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47238.11832.1 >prot_H-elongata_contig47238.11832.1 ID=prot_H-elongata_contig47238.11832.1|Name=mRNA_H-elongata_contig47238.11832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=327bp
MDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANL HAAAEEEIARRKAGGKEMARSAEGGRTEAGKGRIYAASKATATRDLARER ENAVVAAAAVGALAKKKKDKTSRRRRGADGSTGVVDPLLASGAADSAVVT VPDVSSLTGSGEGARRCGNEEYEVVFGAGGLGFTLMKDAVSRALVTRLAP GGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAA LAAPPPGNSSSPLTSSRLPTLLATGADRASTRSSDSESSSSNSSSGNGSS ISGSSSGSTTASSGGTGGRETDTADEE back to topmRNA from alignment at H-elongata_contig47238:1274..4135- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig47238.11832.1 ID=mRNA_H-elongata_contig47238.11832.1|Name=mRNA_H-elongata_contig47238.11832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2862bp|location=Sequence derived from alignment at H-elongata_contig47238:1274..4135- (Himanthalia elongata Himel1 dioecious) CGGCAGCTGACGATGGACTGCTGGGACATTGCTCAGGTGACAAGGATGGA
GCTCGGCGGCAACAAGCAGCTTAGGGCGTGGTTCGCCAGATGCAAAACGG
AGAACAGCGCCCTGGAGATGAAGTACAGGACCAAGGCCGCCACGCTCTAC
CGGTACGTCGGCGCGTCGGTGGAGTAAAACCCAGAGCTCCGTGTTGCACC
ATTTTTATGGGCATAATGATTATGTTTTTATAGGTAACGTGAACTATCGT
GGGGATGACACATTGCCGCTCCTCCAAACGGAAGGGTCACCCCCATCCGT
TGTTCAGTGGTGCAAGTTTCAAAATTGAACAAACACTAAAGACTCTAGGT
GGGCAGAGAGGCAACGCATGCTGCAAAAAATCGTTTTAACTGTTAAAGTC
CAGGATCCAGAAGTGAGAGTGAAAACGCGCGCGCGTGTCCACGACCGTTT
GTTCGGCAACGACAGTGCCAACCTGCATGCCGCCGCGGAGGAAGAGATCG
CTCGACGCAAAGCCGGGGGCAAAGAGATGGCAAGGTCGGCAGAAGGCGGA
CGGACAGAAGCCGGAAAGGGTCGCATTTACGCCGCCTCAAAAGCAACCGC
GACAAGGGACCTCGCCCGAGAGGTGCAGTATATAAATTACAGTAGTAAAT
ACAATCCTGGAGAGGTTGAAACGGTAACGGGTGAAAACCAGGCCTCCGCG
TACTCACGCGCGGCGTTCTTTTTTCCTGTCGTGCTTGACGCCAGGACTTG
GTCGTAGCGGGGGTAGGGACCATTAATAGTACATTTTTTGTGAGGAGCGA
TTGATGGCTAAACACTCCGAAGATGTCATGTTTCGTCGTGTTTTGGCTTG
CGGTGTGTACATCTTGTATAGGACCTTGTCGGCCGACACTACGATTCCAG
CAAGGGCACAACTTGGAAATCATCCGCATCCCGATCGCTTGAAGCACACC
CTCCACTTCCACACACACACCGCCCCACTCCCCATATTTCCCCTCCTCGT
CCCCTTTCCGGGTGAGGAATTGGATCGACTTATTCCGGGTGGTACCCCAT
CATACATTCTCCATCCGCGTACGCATGTTCATTTCGAACCGAGGCGAGTC
GAGCGCACGAACGCGGCAGCACCCCACCTCTCTTTACATTCCTCGCCCTC
TCGCCTCGCTACAGAGAGAAAACGCGGTGGTGGCGGCAGCGGCGGTCGGA
GCGCTAGCCAAGAAGAAGAAGGACAAGACCAGCCGCAGACGACGGGGCGC
GGACGGGAGCACCGGCGTGGTAGATCCCTTGTTGGCGTCTGGTGCTGCTG
ATTCGGCGGTGGTGACGGTGCCGGACGTTTCGAGTTTGACTGGGAGCGGA
GAAGGGGCGAGGCGGTGCGGAAACGAAGAGTATGAGGTGTGCGGTGTGCG
GTATGCGGACGTGCGTGCTCTTGTAGAGAACTCCCACCCACCCACTCACC
CACCCCTATGAGGCAACATTTTTTTATGATGCCTGATCTCTGGACTCGGC
AAGACGTAAAACCTCGGATTTTGCTCCCTAGATTAGCCCCTTATTTGACG
ATGTAATGTGGGAGCCGAAATGACATCTTGAGAGCTTTGGGGGGAAATCC
ATCACGTTTATTTACACAATCATTTGCCCTCATTTTGGGGGATGTGTGAT
GCAACCAGGGCCTCGAAATGAGAGTTTTGAGAGTTTTTAAGGGCACAATC
ATATGCTCTCTCAGCGTTTGTATTTGTGTATAGTGGGAGTGGTCGGGGAG
AGGCTTTATCTAAAACAGTCGGGTTGCCGGTGAACGCCATATTATTGGGT
ACAGAAAATCCAATGGTGTCTTCTCCGCGCCCCCCCCCTCGAAAATGCCG
CTCTTTCCACCTATTTGTATGTGAATGTGAATTGTGTGTCTCCTGTTGCC
GGAGGTGGTCTTCGGAGCTGGAGGCTTGGGCTTCACCCTTATGAAGGACG
CTGTCAGCCGCGCACTTGTCACTCGTCTCGCCCCCGGCGGCGCTGCTTTT
CACCTCGGAGTTCGTACGGGTGCGTTTGCTTGTGTATGGTTGTGCGTCTA
CAACTGCGAGCGCGCGGACGGGTGATTGGAACTTCGCGCGTCGGACGGAA
CGATCGCCATCGACGCGACAACGGAGAACACTTCGGTGTACACACCACAC
ACACACAAACACACGGATATAGACACGTGCGAGAGTGGCACGTCCTTCTC
TTTTTCTCCCTCAAAAAAACAAGCTGGGGAGATGTTGACATGTTCTCGTT
GGGGCGTGTCACTACTCTCAAGATCTGTAGGCAAGAGCAGTATATGTATA
TGCACATATAATTGTTTTGAACAAGGCAAAAACAACCACCTCTATATGGC
CATCCTGTTCCCTGGGGACTAGCCCCTGATTCCTAAAAGCCTCCGGGCCT
TCTCGCCTCCTTTATTATGGATTACTTGACTTCGTTTCAGGTGACTATCT
TGTCGGCGTGAGCGGAAACCGCCTTTTTGACTACGACAAGCTGATGGTCC
TCCTTCCCCGGGCACCTCGGCCGCTGCGCCTGCTCTTCGAGGGCGCGGGG
GCAGCGTTAGCAGCCCCGCCGCCGGGCAATTCATCCTCTCCACTCACCTC
TTCGCGCTTGCCAACGCTGCTCGCCACGTCGCCGCCGTTTTCCCACCAGC
TTGAGAAGGAGCAGCAACGAGAACGACCACGGTGGTTGGGTCCGCGGGGG
AGCGGCGCCGACCGTGCGTCTACCCGTTCAAGCGACAGCGAATCCTCTTC
GAGCAATAGCAGTAGTGGTAACGGTAGCAGCATCAGCGGCAGCAGCAGTG
GTAGTACCACCGCTAGCAGCGGGGGAACTGGTGGCCGCGAGACGGACACT
GCTGACGAAGAG back to topCoding sequence (CDS) from alignment at H-elongata_contig47238:1274..4135- >mRNA_H-elongata_contig47238.11832.1 ID=mRNA_H-elongata_contig47238.11832.1|Name=mRNA_H-elongata_contig47238.11832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at H-elongata_contig47238:1274..4135- (Himanthalia elongata Himel1 dioecious) ATGGACTGCTGGGACATTGCTCAGGTGACAAGGATGGAGCTCGGCGGCAA CAAGCAGCTTAGGGCGTGGTTCGCCAGATGCAAAACGGAGAACAGCGCCC TGGAGATGAAGTACAGGACCAAGGCCGCCACGCTCTACCGATGGACTGCT GGGACATTGCTCAGGTGACAAGGATGGAGCTCGGCGGCAACAAGCAGCTT AGGGCGTGGTTCGCCAGATGCAAAACGGAGAACAGCGCCCTGGAGATGAA GTACAGGACCAAGGCCGCCACGCTCTACCGTGCCAACCTGCATGCCGCCG CGGAGGAAGAGATCGCTCGACGCAAAGCCGGGGGCAAAGAGATGGCAAGG TCGGCAGAAGGCGGACGGACAGAAGCCGGAAAGGGTCGCATTTACGCCGC CTCAAAAGCAACCGCGACAAGGGACCTCGCCCGAGAGTGCCAACCTGCAT GCCGCCGCGGAGGAAGAGATCGCTCGACGCAAAGCCGGGGGCAAAGAGAT GGCAAGGTCGGCAGAAGGCGGACGGACAGAAGCCGGAAAGGGTCGCATTT ACGCCGCCTCAAAAGCAACCGCGACAAGGGACCTCGCCCGAGAGAGAGAA AACGCGGTGGTGGCGGCAGCGGCGGTCGGAGCGCTAGCCAAGAAGAAGAA GGACAAGACCAGCCGCAGACGACGGGGCGCGGACGGGAGCACCGGCGTGG TAGATCCCTTGTTGGCGTCTGGTGCTGCTGATTCGGCGGTGGTGACGGTG CCGGACGTTTCGAGTTTGACTGGGAGCGGAGAAGGGGCGAGGCGGTGCGG AAACGAAGAGTATGAGAGAGAAAACGCGGTGGTGGCGGCAGCGGCGGTCG GAGCGCTAGCCAAGAAGAAGAAGGACAAGACCAGCCGCAGACGACGGGGC GCGGACGGGAGCACCGGCGTGGTAGATCCCTTGTTGGCGTCTGGTGCTGC TGATTCGGCGGTGGTGACGGTGCCGGACGTTTCGAGTTTGACTGGGAGCG GAGAAGGGGCGAGGCGGTGCGGAAACGAAGAGTATGAGGTGGTCTTCGGA GCTGGAGGCTTGGGCTTCACCCTTATGAAGGACGCTGTCAGCCGCGCACT TGTCACTCGTCTCGCCCCCGGCGGCGCTGCTTTTCACCTCGGAGTTCGTA CGGGTGGTCTTCGGAGCTGGAGGCTTGGGCTTCACCCTTATGAAGGACGC TGTCAGCCGCGCACTTGTCACTCGTCTCGCCCCCGGCGGCGCTGCTTTTC ACCTCGGAGTTCGTACGGGTGACTATCTTGTCGGCGTGAGCGGAAACCGC CTTTTTGACTACGACAAGCTGATGGTCCTCCTTCCCCGGGCACCTCGGCC GCTGCGCCTGCTCTTCGAGGGCGCGGGGGCAGCGTTAGCAGCCCCGCCGC CGGGCAATTCATCCTCTCCACTCACCTCTTCGCGCTTGCCAACGCTGCTC GCCACGTGACTATCTTGTCGGCGTGAGCGGAAACCGCCTTTTTGACTACG ACAAGCTGATGGTCCTCCTTCCCCGGGCACCTCGGCCGCTGCGCCTGCTC TTCGAGGGCGCGGGGGCAGCGTTAGCAGCCCCGCCGCCGGGCAATTCATC CTCTCCACTCACCTCTTCGCGCTTGCCAACGCTGCTCGCCACCGGCGCCG ACCGTGCGTCTACCCGTTCAAGCGACAGCGAATCCTCTTCGAGCAATAGC AGTAGTGGTAACGGTAGCAGCATCAGCGGCAGCAGCAGTGGTAGTACCAC CGCTAGCAGCGGGGGAACTGGTGGCCGCGAGACGGACACTGCTGACGAAG AGCGGCGCCGACCGTGCGTCTACCCGTTCAAGCGACAGCGAATCCTCTTC GAGCAATAGCAGTAGTGGTAACGGTAGCAGCATCAGCGGCAGCAGCAGTG GTAGTACCACCGCTAGCAGCGGGGGAACTGGTGGCCGCGAGACGGACACT GCTGACGAAGAG back to top
|