mRNA_H-elongata_contig114840.1183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114840.1183.1
Unique NamemRNA_H-elongata_contig114840.1183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Match: A0A6L2JDW5_TANCI (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JDW5_TANCI)

HSP 1 Score: 66.2 bits (160), Expect = 5.220e-12
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPSRPGS 120
            FGL +ATR HEVG  SNRGS CRGEYV  PCTH PS PG+
Sbjct:  177 FGLFSATREHEVGIASNRGSACRGEYVPEPCTHRPSHPGN 216
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BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Match: A0A175AB67_9FIRM (Uncharacterized protein n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A175AB67_9FIRM)

HSP 1 Score: 62.0 bits (149), Expect = 1.500e-11
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPSRPGSLG 126
            FGL+AATR HEVG  SNRGS C GEYV  PCTH PS   S G
Sbjct:   39 FGLQAATRLHEVGIASNRGSACHGEYVPGPCTHRPSHHESRG 80
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BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Match: UPI001900472D (hypothetical protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001900472D)

HSP 1 Score: 60.8 bits (146), Expect = 4.290e-11
Identity = 29/41 (70.73%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPSRPGSL 123
            FGL+AATR HEVG  SNRGS CRGEYV   CTH PS   SL
Sbjct:   39 FGLQAATRLHEVGIASNRGSACRGEYVPGSCTHRPSHHESL 79
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BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Match: A0A7Z1LHQ8_9HYPH (50S ribosomal protein L32 n=1 Tax=Candidatus Hodgkinia cicadicola TaxID=573658 RepID=A0A7Z1LHQ8_9HYPH)

HSP 1 Score: 56.6 bits (135), Expect = 2.550e-9
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPSRPGS 120
            FGL +ATR HEVG  SNRGS C GEYV   CTH PS  G+
Sbjct:   33 FGLYSATRVHEVGIASNRGSACHGEYVLGSCTHRPSHHGN 72
[Close]
BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Match: A0A3G2C8D7_9FIRM (Uncharacterized protein n=1 Tax=uncultured Dialister sp. TaxID=278064 RepID=A0A3G2C8D7_9FIRM)

HSP 1 Score: 53.5 bits (127), Expect = 3.310e-8
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPS 108
            F L+AATR HE G  SNRGS  RGEYV  PCTH PS
Sbjct:   39 FRLQAATRLHEAGIASNRGSAYRGEYVPGPCTHRPS 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114840.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6L2JDW5_TANCI5.220e-1272.50Uncharacterized protein ycf68 (Fragment) n=1 Tax=T... [more]
A0A175AB67_9FIRM1.500e-1169.05Uncharacterized protein n=2 Tax=Eubacteriales TaxI... [more]
UPI001900472D4.290e-1170.73hypothetical protein n=2 Tax=Paenibacillus TaxID=4... [more]
A0A7Z1LHQ8_9HYPH2.550e-965.0050S ribosomal protein L32 n=1 Tax=Candidatus Hodgk... [more]
A0A3G2C8D7_9FIRM3.310e-869.44Uncharacterized protein n=1 Tax=uncultured Dialist... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114840contigH-elongata_contig114840:153..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.3392653-CDS-H-elongata_contig114840:152..2781622929664.3392653-CDS-H-elongata_contig114840:152..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114840 153..278 +
1691679110.8560512-CDS-H-elongata_contig114840:152..2781691679110.8560512-CDS-H-elongata_contig114840:152..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114840 153..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114840.1183.1prot_H-elongata_contig114840.1183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114840 153..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114840.1183.1

>prot_H-elongata_contig114840.1183.1 ID=prot_H-elongata_contig114840.1183.1|Name=mRNA_H-elongata_contig114840.1183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
FGLRAATRSHEVGSTSNRGSGCRGEYVTRPCTHHPSRPGSLG
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mRNA from alignment at H-elongata_contig114840:153..278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114840.1183.1 ID=mRNA_H-elongata_contig114840.1183.1|Name=mRNA_H-elongata_contig114840.1183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig114840:153..278+ (Himanthalia elongata Himel1 dioecious)
TTCGGATTGAGGGCTGCTACTCGCTCTCATGAAGTTGGAAGCACTAGTAA
TCGCGGATCAGGTTGCCGCGGTGAATATGTCACTAGACCTTGCACACATC
ATCCGTCACGTCCTGGGAGTTTAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig114840:153..278+

>mRNA_H-elongata_contig114840.1183.1 ID=mRNA_H-elongata_contig114840.1183.1|Name=mRNA_H-elongata_contig114840.1183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig114840:153..278+ (Himanthalia elongata Himel1 dioecious)
TTCGGATTGAGGGCTGCTACTCGCTCTCATGAAGTTGGAAGCACTAGTAA
TCGCGGATCAGGTTGCCGCGGTGAATATGTCACTAGACCTTGCACACATC
ATCCGTCACGTCCTGGGAGTTTAGGATTCGGATTGAGGGCTGCTACTCGC
TCTCATGAAGTTGGAAGCACTAGTAATCGCGGATCAGGTTGCCGCGGTGA
ATATGTCACTAGACCTTGCACACATCATCCGTCACGTCCTGGGAGTTTAG
GA
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