mRNA_H-elongata_contig47219.11829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47219.11829.1
Unique NamemRNA_H-elongata_contig47219.11829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47219.11829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47219contigH-elongata_contig47219:2630..4016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-18_004370.2
Exons2
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.3926635-CDS-H-elongata_contig47219:2629..27811622930779.3926635-CDS-H-elongata_contig47219:2629..2781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47219 2630..2781 -
1691679566.5442786-CDS-H-elongata_contig47219:2629..27811691679566.5442786-CDS-H-elongata_contig47219:2629..2781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47219 2630..2781 -
1622930779.4097311-CDS-H-elongata_contig47219:3604..40161622930779.4097311-CDS-H-elongata_contig47219:3604..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47219 3605..4016 -
1691679566.563678-CDS-H-elongata_contig47219:3604..40161691679566.563678-CDS-H-elongata_contig47219:3604..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47219 3605..4016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47219.11829.1prot_H-elongata_contig47219.11829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47219 2630..4016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47219.11829.1

>prot_H-elongata_contig47219.11829.1 ID=prot_H-elongata_contig47219.11829.1|Name=mRNA_H-elongata_contig47219.11829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
TSPADGGVILSTGGLSSIEFIDCRFERNVAKHSGGVVRANSAALFTAKNS
LFLRNIAAGADGNGYGGAVYLSGRQPDTQTQTVIEGCEFRENNASFWGGA
LCHDTMGNLAVMDTTVAMNWAGYKGGGVRASGGIQEVLTVTVMVESSNFS
RNGAENGGGLSMQGNLTVIIENSLFDDNFASAHGGGVF
back to top

mRNA from alignment at H-elongata_contig47219:2630..4016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47219.11829.1 ID=mRNA_H-elongata_contig47219.11829.1|Name=mRNA_H-elongata_contig47219.11829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1387bp|location=Sequence derived from alignment at H-elongata_contig47219:2630..4016- (Himanthalia elongata Himel1 dioecious)
ACGTCCCCCGCGGACGGTGGGGTCATCTTGTCCACGGGGGGCTTGTCATC
CATCGAGTTCATTGACTGCCGTTTCGAAAGAAATGTTGCGAAACATTCCG
GGGGTGTGGTGCGAGCCAACTCAGCTGCGCTATTTACCGCCAAGAATTCA
TTGTTCCTGAGGAATATCGCTGCTGGGGCCGATGGAAATGGCTATGGCGG
AGCGGTCTACTTGTCGGGGAGGCAACCGGACACCCAGACCCAGACCGTTA
TCGAGGGGTGCGAGTTTCGCGAAAACAATGCCTCCTTCTGGGGCGGGGCT
CTGTGCCACGATACCATGGGCAATTTGGCCGTAATGGACACAACCGTGGC
GATGAACTGGGCGGGCTACAAAGGAGGCGGTGTAAGGGCTAGCGGGGGTA
TTCAAGAGGTACGTGGGTCAGGGTTAGGGTTAGGGCTAGGGCTAGGGTTA
GGATTTTTTAGCTACTAATAGTACAAGTATTTGTACTGTTCCTTTTATGA
AAAGTGATGTTATATAACTGTCCCCTCCGAAACGTGCAGGAGGGGGCAGT
ATTAATATAGTATATAGTATAGTATATTGTATAATAGTAGAGCAGCGTCA
TTCTCCCCGATGTCAAATTTTAGATTTGTTTAGCCATAGGCGACCAACAA
ATCCTAACCCGAACCTCTCCTCGCTATCGTCTAAAGGTTAGGGTTAGGGT
TAGAGTTGAACTTTGCTTACTTCCGTTCCCATAACACTTCTGTTACCGAA
AAAAAAAGAAAAGCTATCCCAACAAAGATCGATGTCACGACTTCCGCCCT
TTTAATCCAGTACAATACTGCTTTATTAGTATTATTAAGAGTAGTATTAA
TAGTATTCATATTACTTGGGTCAAGACTGCTACTAACCCTAACCCTAACC
CTAACATAGCCAGTCGATCATTACGTTTACTGGATATACTTAAATACAGG
AAACCCCATCGACAACCGTCGAGTGATTTCGTCTGGACGAGCACCCTAAG
CCTAACCCCAACGACACCCGTGTATTCTCCTTGCGTGATGTTGATATTGA
TGTTGATATTGCTGTTGCTGTTGATGATGATATTGCGGTGTGTTGAAATG
GAAATGGACACACGAACAATACGTAGGTGCAAATTGTCAAGAGCGTGTTC
GAGGACAATCTCTTGGCCGAGAATTCATCGTGGGTAAACAACGCTTACGA
AGGCGGCGGCATGAGCGTTTCCGGTGAATCTGTAGTCACGGTCACAGTCA
TGGTTGAATCTTCAAACTTTTCACGCAACGGCGCGGAAAATGGAGGAGGC
TTGTCCATGCAAGGAAACCTCACCGTCATAATCGAAAACTCGCTGTTTGA
CGACAATTTTGCAAGCGCTCATGGCGGAGGGGTGTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig47219:2630..4016-

>mRNA_H-elongata_contig47219.11829.1 ID=mRNA_H-elongata_contig47219.11829.1|Name=mRNA_H-elongata_contig47219.11829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig47219:2630..4016- (Himanthalia elongata Himel1 dioecious)
ACGTCCCCCGCGGACGGTGGGGTCATCTTGTCCACGGGGGGCTTGTCATC
CATCGAGTTCATTGACTGCCGTTTCGAAAGAAATGTTGCGAAACATTCCG
GGGGTGTGGTGCGAGCCAACTCAGCTGCGCTATTTACCGCCAAGAATTCA
TTGTTCCTGAGGAATATCGCTGCTGGGGCCGATGGAAATGGCTATGGCGG
AGCGGTCTACTTGTCGGGGAGGCAACCGGACACCCAGACCCAGACCGTTA
TCGAGGGGTGCGAGTTTCGCGAAAACAATGCCTCCTTCTGGGGCGGGGCT
CTGTGCCACGATACCATGGGCAATTTGGCCGTAATGGACACAACCGTGGC
GATGAACTGGGCGGGCTACAAAGGAGGCGGTGTAAGGGCTAGCGGGGGTA
TTCAAGAGGTACACGTCCCCCGCGGACGGTGGGGTCATCTTGTCCACGGG
GGGCTTGTCATCCATCGAGTTCATTGACTGCCGTTTCGAAAGAAATGTTG
CGAAACATTCCGGGGGTGTGGTGCGAGCCAACTCAGCTGCGCTATTTACC
GCCAAGAATTCATTGTTCCTGAGGAATATCGCTGCTGGGGCCGATGGAAA
TGGCTATGGCGGAGCGGTCTACTTGTCGGGGAGGCAACCGGACACCCAGA
CCCAGACCGTTATCGAGGGGTGCGAGTTTCGCGAAAACAATGCCTCCTTC
TGGGGCGGGGCTCTGTGCCACGATACCATGGGCAATTTGGCCGTAATGGA
CACAACCGTGGCGATGAACTGGGCGGGCTACAAAGGAGGCGGTGTAAGGG
CTAGCGGGGGTATTCAAGAGGTACTCACGGTCACAGTCATGGTTGAATCT
TCAAACTTTTCACGCAACGGCGCGGAAAATGGAGGAGGCTTGTCCATGCA
AGGAAACCTCACCGTCATAATCGAAAACTCGCTGTTTGACGACAATTTTG
CAAGCGCTCATGGCGGAGGGGTGTTTTCACGGTCACAGTCATGGTTGAAT
CTTCAAACTTTTCACGCAACGGCGCGGAAAATGGAGGAGGCTTGTCCATG
CAAGGAAACCTCACCGTCATAATCGAAAACTCGCTGTTTGACGACAATTT
TGCAAGCGCTCATGGCGGAGGGGTGTTT
back to top