prot_H-elongata_contig114810.1182.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig114810.1182.1
Unique Nameprot_H-elongata_contig114810.1182.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length210
Homology
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 1.740e-103
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+NISTPIITAKLVQD+SKTSARVVKAKIEKTTLGQV+VYMKEVFSA+ECFI+IKLDM  +QDLHLD+ VH+VR SILKG +GE RP++LRDLKPQ+V++S GGHKIKVMPPEL+  KS RA ETVRPKTFFVLQ LKAVLPGVIVQGIPSVNRAVINVQE  + A   +G+AP+ERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV
Sbjct: 1185 ASKNISTPIITAKLVQDDSKTSARVVKAKIEKTTLGQVAVYMKEVFSASECFIAIKLDMHAVQDLHLDINVHTVRHSILKGNFGETRPRVLRDLKPQNVVISGGGHKIKVMPPELSGAKSARAAETVRPKTFFVLQALKAVLPGVIVQGIPSVNRAVINVQENSSGA--ASGAAPKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 1392          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE)

HSP 1 Score: 197 bits (501), Expect = 3.270e-58
Identity = 112/211 (53.08%), Postives = 147/211 (69.67%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGG-HKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+ ISTPIITAKL QD++K  AR+VKA IEKTTLG++S ++KEV+S+ +C+IS++LDMETI+ L L++  ++VR+SIL G  G+ R  +LR LK Q + V  G   K++V  P      S     ++ P TFFV+Q LK  LP VIVQGIPSVNRAVIN ++             +  YHLLVEGYGLA VMG+PG+DG+ T +NHIIEV
Sbjct:   73 ASKLISTPIITAKLDQDDNKVGARIVKAGIEKTTLGEISAHIKEVYSSGKCYISVQLDMETIEQLKLNIDANTVRRSILYGARGQTRAPVLRILKEQSIKVKRGSTSKLRVYLPSQPESAS----SSIPPTTFFVMQALKVTLPQVIVQGIPSVNRAVINEEDKGG----------RTSYHLLVEGYGLAEVMGSPGVDGSHTTTNHIIEV 269          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3PXX2_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXX2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.690e-58
Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+NISTPIITA+LVQDN+K  ARVVKA IEKTTLGQVS Y+KEV++ ++C+IS++LD++ I  L L + V+SVR+SILKG  G  RP ILR LK  HV V  G   K+++  PE +            P  +F +Q LK  LP VIVQGIPSVNRAVIN ++ +           +  YHLLVEGYGLA VMG+PGIDG RT +NH+IEV
Sbjct: 1097 ASKNISTPIITAQLVQDNNKIGARVVKAVIEKTTLGQVSSYIKEVYAPSKCYISVELDLKAIDQLKLSIDVYSVRRSILKGVIGHTRPAILRSLKDCHVKVKKGSKAKLRIYIPERSDKPGSNP-----PPLYFAMQALKVALPRVIVQGIPSVNRAVINEEDKEG----------ETSYHLLVEGYGLAEVMGSPGIDGRRTTTNHVIEV 1292          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.810e-56
Identity = 117/211 (55.45%), Postives = 150/211 (71.09%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+ ISTPIITAKLVQDN+K +ARVVKA IEKTTLG++++Y+KEV+S+T+C+ISI +DM+ I  L L++   +VR SIL+G  G+ R  +LR LK  +V+V  G   K++VM PE  S KS  A+       +F +Q LK  LP VIVQGIP+VNRAVIN ++         G   +E YHLLVEGYGL  VMGAPGIDG  T++NHIIEV
Sbjct: 1095 ASKLISTPIITAKLVQDNNKIAARVVKAVIEKTTLGEIAIYIKEVYSSTKCYISILIDMDAIDQLRLEIDAFTVRTSILRGARGQTRAPVLRGLKEANVLVKKGSKSKLRVMIPE-KSEKSGAAL-------YFTMQALKVALPLVIVQGIPTVNRAVINAED--------EGKNGKETYHLLVEGYGLPEVMGAPGIDGRNTKTNHIIEV 1289          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 8.660e-55
Identity = 108/211 (51.18%), Postives = 142/211 (67.30%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+ ISTPIITA LVQD++K  ARVVKA IEKTTLG++S Y+KEV++  +C+++++LDM  I+ L L +   +VR SIL+G  G+ RP +LR LK QHV V  G   K+++  PE    +S R   +     +FV+Q LK  LP VIVQGI +VNRAVIN ++ D  A           YHLLVEG GL+AVMG+ G+DG  T +NHIIEV
Sbjct:   53 ASKVISTPIITATLVQDDNKVGARVVKAGIEKTTLGEISEYIKEVYAPGKCYVTVQLDMNAIEQLKLSIDAFTVRTSILRGARGQTRPAVLRGLKDQHVKVKKGSKSKLRIYVPE----RSERGNASATAPVYFVMQALKVALPLVIVQGIATVNRAVINEEDKDGRA----------SYHLLVEGCGLSAVMGSNGVDGHHTTTNHIIEV 249          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS)

HSP 1 Score: 196 bits (499), Expect = 2.130e-54
Identity = 110/211 (52.13%), Postives = 143/211 (67.77%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+NISTPIITAKLVQD++K  AR+VKA IEKTTLG++S+Y+KEV+S+ +C++SI LDM+ I+ L L++   SVR+ ILKG  G+ RP ILR L  +HV+V  G   K++V  P+                T+F++Q LK  LP VIVQGI +VNRAVIN +                +YHLLVEGYGLA VMG+PG+DG  T +NHIIEV
Sbjct: 1099 ASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYVKEVYSSGDCYLSILLDMDAIRQLRLNIDAVSVRRCILKGVRGQTRPPILRSLTDKHVLVKKGSKSKLRVFVPDKGETP-----------TYFLMQALKVALPRVIVQGISTVNRAVINEENKGGKT----------QYHLLVEGYGLAEVMGSPGVDGRHTTTNHIIEV 1288          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3HNI7_9STRA (DNA-directed RNA polymerase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNI7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 6.750e-54
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS  ISTPII A+LVQ +S TSAR+VKA+IEKTTLG+V+ Y+KEV      +I+IKLD ETIQ+LHL+VT  SV+ +IL G     RP ILR LK +H+ +S  G+KIK+ PPE     + + + +   K +FV+Q LKA LP VIVQGIP+V+RAVIN +E D        SA ++ ++LLVEGYGL  VMG PG+ G  ++SNHI+E+
Sbjct:  182 ASGEISTPIIEARLVQSDSMTSARIVKAQIEKTTLGEVAQYIKEVNRPMTSYIAIKLDSETIQNLHLNVTAASVKHAILYGPSSTTRPAILRLLKERHISISDKGNKIKIYPPEQKD--TAKGIPS-HQKVYFVIQALKAALPQVIVQGIPTVSRAVIN-EELD--------SAGKKNFYLLVEGYGLQEVMGCPGVMGDSSKSNHIMEL 379          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: K0T0J0_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0J0_THAOC)

HSP 1 Score: 194 bits (492), Expect = 1.480e-53
Identity = 112/210 (53.33%), Postives = 144/210 (68.57%), Query Frame = 0
Query:    2 SQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            S+NISTPIITAKLVQDN+K  AR+VKA IEKTTLG++S+ +KEV+S+++C++SI+LDM+ I+ L L++   SVR+ ILKGT G+ RP +LR L  +HV+V  G   K++V  P   S             T+F +Q LK  LPGVIVQGI SVNRAVIN +          G  P   YHLLVEG GLA VMG+PG+DG  T +NHI+EV
Sbjct:  699 SKNISTPIITAKLVQDNNKVGARIVKAGIEKTTLGEISICIKEVYSSSDCYLSIQLDMKAIEQLRLNIDAVSVRRCILKGTRGQTRPAVLRGLLEKHVLVKKGSKSKLRVYVPTDKS----------DSPTYFTMQALKVALPGVIVQGISSVNRAVINEES--------KGGKPS--YHLLVEGCGLAEVMGSPGVDGKFTTTNHIMEV 888          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1FY33_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY33_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.430e-53
Identity = 109/211 (51.66%), Postives = 143/211 (67.77%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+ ISTPIITAKLV+D++K  ARVVK  IEKTTLG+++ Y+KEV+S   C++S+KLDM  I+ L L V   SVR SIL+G  G+ +P  LR LK  +V++  G   K++++ PE T+          +P  +F +Q LK  LP VIVQGIPSVNRAVIN +E D           +  YHLL+EGYGLA VMGAPG+DG +T +NH+IEV
Sbjct: 1179 ASKLISTPIITAKLVRDDNKVGARVVKGVIEKTTLGELAEYIKEVYSPKHCYLSVKLDMGAIEQLKLAVDAVSVRTSILRGVPGQTKPPTLRFLKEGNVLIKRGSRSKLRIIIPENTAAN--------QPPAYFYMQALKIHLPNVIVQGIPSVNRAVINEEEKDG----------KPSYHLLIEGYGLAEVMGAPGVDGLKTTTNHLIEV 1371          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.210e-52
Identity = 106/211 (50.24%), Postives = 145/211 (68.72%), Query Frame = 0
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 210
            AS+ ISTPIITA+LVQ+++K  ARVVKA IEKTTLG+++  +KEV++  + +IS++LDM+ I+ L L++  ++VR SIL+G  G+ RP +LR LK  HV V  G   K++V  P+ +  K+ +      P  +F +Q LK  LP VIV+GIP+VNRAVIN ++ D              YHLLVEGYGLA VMG+PG+DG RT +NHIIEV
Sbjct: 1104 ASKLISTPIITARLVQNDNKVGARVVKAGIEKTTLGEIATCIKEVYAPNKTYISVQLDMDAIEQLKLEIDAYTVRTSILRGARGQTRPPVLRSLKETHVRVKKGSKSKLRVYIPDPSEKKANQ------PPLYFAMQALKVALPDVIVRGIPTVNRAVINEEDEDGKT----------TYHLLVEGYGLAEVMGSPGVDGRRTTTNHIIEV 1298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU80_ECTSI1.740e-10382.38DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S1D4Y3_CYCTE3.270e-5853.08DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A7S3PXX2_9STRA3.690e-5855.45DNA-directed RNA polymerase subunit n=2 Tax=Chaeto... [more]
A0A7S1ZKV2_9STRA2.810e-5655.45DNA-directed RNA polymerase subunit n=5 Tax=Ditylu... [more]
A0A6T7J7L8_9STRA8.660e-5551.18DNA-directed RNA polymerase n=1 Tax=Attheya septen... [more]
B8C4M1_THAPS2.130e-5452.13DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A7S3HNI7_9STRA6.750e-5453.33DNA-directed RNA polymerase n=2 Tax=Spumella elong... [more]
K0T0J0_THAOC1.480e-5353.33DNA-directed RNA polymerase n=1 Tax=Thalassiosira ... [more]
A0A7S1FY33_9STRA6.430e-5351.66DNA-directed RNA polymerase subunit n=1 Tax=Coreth... [more]
A0A7S4NGV3_9STRA2.210e-5250.24DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 3..210
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 3..210
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114810contigH-elongata_contig114810:69..2065 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114810.1182.1mRNA_H-elongata_contig114810.1182.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig114810 69..2065 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig114810.1182.1 ID=prot_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATE
CFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVI
VSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGI
PSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGT
RTRSNHIIEV
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