mRNA_H-elongata_contig47167.11821.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI) HSP 1 Score: 295 bits (755), Expect = 6.410e-91 Identity = 204/317 (64.35%), Postives = 230/317 (72.56%), Query Frame = 1
Query: 1 GQGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIFGPSQASSEQSHRQVLLVKAAKVGIKAHKMRLLEPDR-----EPPSAATRNRSSPRGGGSFIS---LERATLC------DAVPCDRKGCGNKIAVGAPKKRRK----AGLSSRAGTATGSVVGGLAA 897
G+GTRFNATKDQAGTYYSTKIWQF+M+CPSCSN +VIKTDPKN+GYEYVEGIRKKDM FDPEEAET RVQDSEVS +LAVDPLYRLEHE+ D+RRA SRKTVLTRLTEL DA A+DDYS+NA LR+ MRA XXXXXXXXXXXXXXXXXXXXXXXXX AR VKYRSRHKGFR EKA+MAAI GESIFG + SSEQ+ R+ +LVKA+K+G+K MRLL PD+ + AAT+ S G S S + A+ C D R G+ I KKRR+ AG R A G VG AA
Sbjct: 61 GRGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKKDMEFDPEEAETQRVQDSEVSKQLAVDPLYRLEHEQRDKRRAASRKTVLTRLTELADAHAQDDYSSNARLRQTMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSVKYRSRHKGFRTGEKAKMAAITGESIFGSGRESSEQARRKAVLVKASKLGLKTRGMRLLRPDQGSRCGDGERAATQRAPSRSLGASSCSRGSISGASACRHSEAPDGSRSSRSSDGSSILREDVKKRRRRPETAGAQGRGDGAQGVFVGSDAA 377
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.010e-37 Identity = 84/193 (43.52%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 1 GQGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVK--YRSRHKGFRIAEKARMAAIAGESIF 573
G+GTRFNA K++AG Y++T +W F MRCPSCS + VIKTDPKNS YE+ GIR+K+ FD E+AE + D + +LA DP+YRLEH D RRA ++KT +TRL + + DY ANA+LR+ R + DA AR + + SR + R EK+R+AAI SIF
Sbjct: 61 GKGTRFNAKKEKAGAYFTTTVWAFHMRCPSCSTEFVIKTDPKNSDYEFSAGIRRKEQHFDAEDAEAPVLADEDTQARLATDPMYRLEHADADVRRADAKKTRITRLMDWSNDVRGSDYDANAALRRAWRGARRERVALEAEAQARGLGVELLPHSEADAAAARAMDLGHSSRLRTMRATEKSRLAAIRASSIF 253
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A662WYR7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYR7_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.090e-33 Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 1
Query: 1 GQGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARK 396
G+G RFNA K + G Y++T IW+F + C SC ++V++TDP+ GY+ V G+RKK FD E+AET RV + EV+ +L DP YRLEHE +D+R A R L L EL+DAQ KDDY++N+SLR +R K
Sbjct: 67 GRGVRFNAKKKRVGAYFTTAIWEFRLSCASCQGEMVVRTDPQQRGYDLVSGVRKKAEEFDAEQAETERVNNPEVAVRLHADPFYRLEHESEDKRAAGKRGKGLEELVELQDAQFKDDYASNSSLRAQLRGEK 198
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A484DZB4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZB4_BRELC) HSP 1 Score: 137 bits (344), Expect = 2.680e-33 Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 1 GQGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARK 396
G+G RFNA K QAG Y+++ IW+F M+CP+CS ++VI+TDPK GYE + G+R+K D EE +T R+ D ++ KL DP RLEHE +D+R AT R L L EL+DA+ KDDY++N++LR R +K
Sbjct: 67 GRGVRFNARKKQAGRYFTSTIWEFCMKCPNCSGEMVIRTDPKARGYELISGVRQKAAMEDAEERQTERLNDPGLTAKLQEDPFLRLEHENEDKRAATKRSRGLEALVELQDAEFKDDYASNSALRAQFRNKK 198
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A068TWZ1_COFCA (Uncharacterized protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068TWZ1_COFCA) HSP 1 Score: 129 bits (324), Expect = 6.650e-30 Identity = 85/216 (39.35%), Postives = 111/216 (51.39%), Query Frame = 1
Query: 4 QGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIFGPSQASSEQSHRQVLLVKAAKVGIKA 651
+G RFNA K Q G+YYSTKIW FTM+ C +++VI+TDPKN Y + G RKK FD E+AET + E +KLA DP YRLEH+++D ++ + VL RL + D++ DDY+ N SLR +R +K DA AR VK+ HK F K + A I SIF SS R L K K+ A
Sbjct: 79 KGVRFNAEKKQVGSYYSTKIWSFTMKSACCKHEIVIQTDPKNCEYVIISGARKKIEEFDVEDAETMLLPVDEERSKLA-DPFYRLEHQEEDIKKKKEAEPVLVRLQRVSDSRHSDDYALNKSLRAKLRNQKKRVAEEEAASRKMGLGIRLLPASEDDAAAARSVKFA--HK-FDKNRKDKRALINAASIFSGYSGSSSSKRRVELESKRRKINAAA 290
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: UPI001FB10B6C (probable splicing factor YJU2B n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB10B6C) HSP 1 Score: 129 bits (323), Expect = 8.370e-30 Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 1
Query: 4 QGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIFGPSQASSEQSHRQVLLVKAAKV 639
+G RFNA K Q G YYSTKIW F+M+ P C N++VI+TDPKN Y + G ++K +D E+AET + E KLA DP YRLEH++ D ++ + VL RL + D++ DDYS N +LR +R++K DA A V++ HK F K + A I SIFG S S+ S R L K K+
Sbjct: 67 KGVRFNAEKKQVGNYYSTKIWNFSMKAPCCKNEIVIQTDPKNCAYLIISGAQQKTEVYDVEDAETFELPADEEKGKLA-DPFYRLEHQEQDLKKKKEAEPVLVRLQRISDSRHSDDYSLNKALRSQLRSQKKRVREEEGTARKIGLGVRLLPASADDAAKAASVRFP--HK-FEKNRKEKRAQINSSSIFGGSSHYSD-SRRLELEAKRRKI 273
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A4P1R570_LUPAN (Uncharacterized protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1R570_LUPAN) HSP 1 Score: 129 bits (323), Expect = 1.460e-29 Identity = 86/213 (40.38%), Postives = 109/213 (51.17%), Query Frame = 1
Query: 4 QGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIF-GPSQASSEQSHRQVLLVKAAKV 639
+G RFNA K Q G YYSTKIW FTM+ C +++VI+TDPKN Y + G +KK FD E+AET + E KL VDP YRLEHE+ D ++ + VL RL L DA+ DDY+ N SLR +R +K D TA VK+ S+ F K + A I SIF G S +SS R L K K+
Sbjct: 83 KGVRFNAEKKQVGNYYSTKIWNFTMKSACCKHEIVIQTDPKNCEYVIISGAQKKTEDFDVEDAETLELPADEERGKL-VDPFYRLEHEEKDLKKKKEAEPVLVRLQRLSDAKHSDDYAINRSLRTQLRNQKKRVAEEEASSRKRGLGIRLLPNSAQDVATAAKVKFSSK---FDRNTKNKRALINASSIFPGLSYSSSSDKRRLELESKRRKI 291
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A1Y2I388_9FUNG (CWC16 protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I388_9FUNG) HSP 1 Score: 128 bits (322), Expect = 3.890e-29 Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 1 GQGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARK 396
G GTR+NA K +AG YYST IW F M+C C N I+TDPKN+ YE VEG RK+ FDPE+A+ V + + +LA DPLYRLEH D+ A +R + L +++D+Q +DD+S+N LR+ RA K
Sbjct: 62 GMGTRYNAEKKKAGNYYSTPIWSFRMKCHLCPNWFEIRTDPKNAEYEIVEGARKRVEEFDPEDAQVMAVNSEDNAERLAADPLYRLEHATKDKELARARAERIAELRDIQDSQFEDDFSSNQLLRRKFRAEK 193
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: A0A251VHP1_HELAN (Uncharacterized protein n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251VHP1_HELAN) HSP 1 Score: 127 bits (318), Expect = 4.280e-29 Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 1
Query: 4 QGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIFGPSQASSEQSHRQVLLVKAAKV 639
+G RFNA K Q G YYSTKIW FTM+ C +++VI+TDPKN+ Y + G +KK FD E+AET + E +KLA DP YRLEH+++D ++ + +L RL + DA+ DDY+ N SLR +R++K D A+ VK+ S F + A I SIF S ASS S R L K K+
Sbjct: 67 KGVRFNAEKKQVGNYYSTKIWNFTMKSACCQHEIVIQTDPKNTEYLVISGAQKKVEEFDTEDAETMALPVDEERSKLA-DPFYRLEHQEEDLKKKKEAEPLLVRLQRVSDARHLDDYAINKSLRAKLRSQKKRVAEEEVAARKMGLGIRLLPETKEDVAAAKRVKFSS---NFNKNRDEKRALIKSASIFSDSSASSS-SRRLELEAKRRKI 273
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Match: UPI00053C80B2 (coiled-coil domain-containing protein 130 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C80B2) HSP 1 Score: 127 bits (318), Expect = 5.300e-29 Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 1
Query: 4 QGTRFNATKDQAGTYYSTKIWQFTMRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSNKLAVDPLYRLEHEKDDRRRATSRKTVLTRLTELKDAQAKDDYSANASLRKGMRARKXXXXXXXXXXXXXXXXXXXXXXXXXDAETARGVKYRSRHKGFRIAEKARMAAIAGESIFGPSQASSEQSHRQVLL 621
+G RFNA K Q G YYSTKIW FTM+ C ++VI+TDPKN Y + G +KK FD E+AET + E KLA DP YRLEH++ D ++ + VL RL + DA+ DDYS N +LR +R+++ DA A VK+ ++ F K + A I SIF S SS S R++ L
Sbjct: 67 KGVRFNAEKKQVGNYYSTKIWNFTMKAACCKQEIVIQTDPKNCEYVIISGAQKKTEEFDVEDAETLELPAEEEKGKLA-DPFYRLEHQEVDLQKKKEAEPVLVRLQRISDARHADDYSRNRALRSQLRSQRKRIAEEEAASRKMGLGIRLLPKSEEDAAAASRVKFATK---FDKNRKDKRALIHASSIFPESAYSSSSSKRRLEL 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47167.11821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47167.11821.1 >prot_H-elongata_contig47167.11821.1 ID=prot_H-elongata_contig47167.11821.1|Name=mRNA_H-elongata_contig47167.11821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp MRCPSCSNDLVIKTDPKNSGYEYVEGIRKKDMAFDPEEAETARVQDSEVSback to top mRNA from alignment at H-elongata_contig47167:1071..3826- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47167.11821.1 ID=mRNA_H-elongata_contig47167.11821.1|Name=mRNA_H-elongata_contig47167.11821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2756bp|location=Sequence derived from alignment at H-elongata_contig47167:1071..3826- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47167:1071..3826- >mRNA_H-elongata_contig47167.11821.1 ID=mRNA_H-elongata_contig47167.11821.1|Name=mRNA_H-elongata_contig47167.11821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig47167:1071..3826- (Himanthalia elongata Himel1 dioecious)back to top |