mRNA_H-elongata_contig114808.1180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114808.1180.1
Unique NamemRNA_H-elongata_contig114808.1180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114808.1180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114808contigH-elongata_contig114808:848..1164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size319
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.0761359-UTR-H-elongata_contig114808:847..8551622929664.0761359-UTR-H-elongata_contig114808:847..855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114808 848..855 +
1691679110.7723646-UTR-H-elongata_contig114808:847..8551691679110.7723646-UTR-H-elongata_contig114808:847..855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114808 848..855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.0925481-CDS-H-elongata_contig114808:855..11641622929664.0925481-CDS-H-elongata_contig114808:855..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114808 856..1164 +
1691679110.7796454-CDS-H-elongata_contig114808:855..11641691679110.7796454-CDS-H-elongata_contig114808:855..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114808 856..1164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114808.1180.1prot_H-elongata_contig114808.1180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114808 856..1164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114808.1180.1

>prot_H-elongata_contig114808.1180.1 ID=prot_H-elongata_contig114808.1180.1|Name=mRNA_H-elongata_contig114808.1180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MGAKIVSRSRMTLTTALLISTTVHAFIFLVPNSIPLRSDANPRCGHPRHC
RFQRKEDGLGEGILEGRPDRDYFHDMQYLNSSKVGGGSSRLDFLRKLVVS
SSA
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mRNA from alignment at H-elongata_contig114808:848..1164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114808.1180.1 ID=mRNA_H-elongata_contig114808.1180.1|Name=mRNA_H-elongata_contig114808.1180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=317bp|location=Sequence derived from alignment at H-elongata_contig114808:848..1164+ (Himanthalia elongata Himel1 dioecious)
GTTTCGTCATGGGAGCGAAAATAGTGTCACGCTCGAGGATGACCCTAACG
ACCGCCCTCCTCATATCCACCACCGTACATGCCTTCATTTTTCTTGTGCC
GAATTCCATTCCGTTGCGCTCTGACGCTAATCCACGGTGCGGACACCCTA
GACACTGCCGTTTCCAGAGAAAGGAGGACGGTCTAGGCGAAGGAATCTTA
GAGGGGAGGCCCGATCGTGATTACTTTCATGATATGCAATATCTAAATAG
TAGCAAGGTTGGAGGTGGTTCTAGCCGTCTAGATTTCCTGCGGAAGCTGG
TAGTGTCGTCCTCGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig114808:848..1164+

>mRNA_H-elongata_contig114808.1180.1 ID=mRNA_H-elongata_contig114808.1180.1|Name=mRNA_H-elongata_contig114808.1180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig114808:848..1164+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGCGAAAATAGTGTCACGCTCGAGGATGACCCTAACGACCGCCCT
CCTCATATCCACCACCGTACATGCCTTCATTTTTCTTGTGCCGAATTCCA
TTCCGTTGCGCTCTGACGCTAATCCACGGTGCGGACACCCTAGACACTGC
CGTTTCCAGAGAAAGGAGGACGGTCTAGGCGAAGGAATCTTAGAGGGGAG
GCCCGATCGTGATTACTTTCATGATATGCAATATCTAAATAGTAGCAAGG
TTGGAGGTGGTTCTAGCCGTCTAGATTTCCTGCGGAAGCTGGTAGTGTCG
TCCTCGGCCATGGGAGCGAAAATAGTGTCACGCTCGAGGATGACCCTAAC
GACCGCCCTCCTCATATCCACCACCGTACATGCCTTCATTTTTCTTGTGC
CGAATTCCATTCCGTTGCGCTCTGACGCTAATCCACGGTGCGGACACCCT
AGACACTGCCGTTTCCAGAGAAAGGAGGACGGTCTAGGCGAAGGAATCTT
AGAGGGGAGGCCCGATCGTGATTACTTTCATGATATGCAATATCTAAATA
GTAGCAAGGTTGGAGGTGGTTCTAGCCGTCTAGATTTCCTGCGGAAGCTG
GTAGTGTCGTCCTCGGCC
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