prot_H-elongata_contig46874.11786.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46874.11786.1
Unique Nameprot_H-elongata_contig46874.11786.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length125
Homology
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: D8LQN5_ECTSI (Similar to putative chromatin structure regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 5.740e-50
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 0
Query:    4 VHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDK 106
            +HP F+N    EAE+ L E S +RGEA+IRPSSKGPDHLSLTWMW++GEFMHTDI+E+GKQ G+ LAP LKI GEEYEDLDEIISRRVSACNDLVNDLLA DK
Sbjct:    1 MHPQFKNFTHLEAEEFLKEMSDTRGEAVIRPSSKGPDHLSLTWMWVEGEFMHTDIKELGKQPGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLASDK 103          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A2A4IUW9_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IUW9_HELVI)

HSP 1 Score: 109 bits (272), Expect = 2.050e-25
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R IVHP F N+ F+EAEK++ + +  +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+    L  DL+A  K    LGG R
Sbjct:  165 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIAY-KYYKPLGGMR 276          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI00067CC25C (transcription elongation factor SPT6-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067CC25C)

HSP 1 Score: 105 bits (261), Expect = 5.180e-25
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGRVEGVLW 121
            R IVHP F N+ F+EAEK++      +GE ++RPSSKG DHL++TW   DG   H D++E GK+   +L   L I+G E+EDLDEII+R V+       DL+A  K    LGG R +   W
Sbjct:   34 RVIVHPAFHNISFAEAEKLMENMV--QGEVIVRPSSKGSDHLTVTWKVADGICQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAY-KYYKPLGGMRDKAEEW 151          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI0003598DB2 (transcription elongation factor SPT6 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0003598DB2)

HSP 1 Score: 107 bits (268), Expect = 1.070e-24
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R I HP F NV + E EK+L+     +G+ ++RPSSKG DHL+ TW   DG   H DI+E GK+   +L  CL I  EEYEDLDEII+R +      V DL+A    R S GG R
Sbjct: 1330 RVIAHPYFHNVSYKECEKLLANMD--QGDVIVRPSSKGSDHLTATWKVADGILQHVDIREEGKENAFSLGRCLWIGTEEYEDLDEIIARHIQPMAATVRDLMAFKYYRDSEGGKR 1442          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI001F9BC97C (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9BC97C)

HSP 1 Score: 107 bits (267), Expect = 1.450e-24
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R IVHP F N+ F+EAEK++ +    +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+    L  DL+   K    LGG R
Sbjct: 1224 RVIVHPAFHNISFAEAEKLMEKMG--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIGY-KYYKPLGGMR 1335          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI001401C2BD (transcription elongation factor SPT6 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401C2BD)

HSP 1 Score: 104 bits (260), Expect = 1.540e-24
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGG 113
            R IVHP+F N+++ EAE +++     +GEA+IRPSSKG DHL++TW   +G   H D++E  K+   +L   L I GEE+EDLDEII+R V     L  DLL+    R S GG
Sbjct:   83 RVIVHPSFHNINYKEAEALMATLD--QGEAVIRPSSKGTDHLTVTWKVAEGVSQHLDVREERKENPFSLGHSLWINGEEFEDLDEIIARHVQPMASLARDLLSHKYYRESTGG 193          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A8K0JYX8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JYX8_LADFU)

HSP 1 Score: 106 bits (265), Expect = 2.710e-24
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R IVHP+F N+ + EAEKI+ +    +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I  EE+EDLDEII+R V+     V D L+    R + GG R
Sbjct: 1193 RVIVHPSFHNISYKEAEKIMEQMD--QGEVIVRPSSKGADHLTVTWKVTDGIYQHVDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARYVNPMAAHVRDALSFRYYRETGGGNR 1305          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: V4ALE7_LOTGI (Transcription elongation factor spt6 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ALE7_LOTGI)

HSP 1 Score: 106 bits (264), Expect = 3.680e-24
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R IVHP+F N+ ++E EK+++     +GE +IRPSSKG DHL++TW   DG   H D++E GK+   +L   L I  EE+EDLDEII+R V     L  D+L     R S GG R
Sbjct: 1315 RVIVHPSFHNISYAECEKLMANVE--QGEVMIRPSSKGADHLTVTWKVADGILQHIDVREEGKENAFSLGRSLLIGNEEFEDLDEIIARHVQPMAALARDILGFRYYRDSEGGKR 1427          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A6J2JLV1_BOMMA (Transcription elongation factor spt6 n=2 Tax=Bombyx TaxID=7090 RepID=A0A6J2JLV1_BOMMA)

HSP 1 Score: 106 bits (264), Expect = 3.700e-24
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 115
            R IVHP F N+ F+EAEK++ + +  +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+       DL+A  K    LGG R
Sbjct: 1327 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVTDGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAY-KYYKPLGGIR 1438          
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A7SRR7_NEMVE (Transcription elongation factor spt6 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SRR7_NEMVE)

HSP 1 Score: 105 bits (263), Expect = 5.020e-24
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 0
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGRVE 117
            R IVHP F+N+ F EAE+ILSE    +GE+++RPSSKG DHL++TW    G + H DI+E GK+   +L   L I  EE+EDLDEII+R +     L  ++L     R + GG + +
Sbjct: 1176 RVIVHPAFRNISFKEAERILSELD--QGESIVRPSSKGSDHLTVTWKVDQGIYQHIDIREEGKENAFSLGHSLWIDTEEFEDLDEIIARHIQPMAALAREILNHKYYRAADGGSKAK 1290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN5_ECTSI5.740e-5076.70Similar to putative chromatin structure regulator ... [more]
A0A2A4IUW9_HELVI2.050e-2547.83Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
UPI00067CC25C5.180e-2545.45transcription elongation factor SPT6-like n=1 Tax=... [more]
UPI0003598DB21.070e-2447.83transcription elongation factor SPT6 isoform X1 n=... [more]
UPI001F9BC97C1.450e-2446.96Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001401C2BD1.540e-2446.90transcription elongation factor SPT6 n=1 Tax=Petro... [more]
A0A8K0JYX8_LADFU2.710e-2446.09Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
V4ALE7_LOTGI3.680e-2446.09Transcription elongation factor spt6 n=1 Tax=Lotti... [more]
A0A6J2JLV1_BOMMA3.700e-2446.96Transcription elongation factor spt6 n=2 Tax=Bomby... [more]
A7SRR7_NEMVE5.020e-2445.30Transcription elongation factor spt6 n=2 Tax=Nemat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035420Spt6, SH2 domainPFAMPF14633SH2_2coord: 1..106
e-value: 1.7E-32
score: 112.6
IPR036860SH2 domain superfamilyGENE3D3.30.505.10coord: 1..99
e-value: 5.8E-29
score: 102.0
IPR036860SH2 domain superfamilySUPERFAMILY55550SH2 domaincoord: 9..88
IPR017072Transcription elongation factor Spt6PANTHERPTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6coord: 1..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46874contigH-elongata_contig46874:463..1661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46874.11786.1mRNA_H-elongata_contig46874.11786.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46874 463..1661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46874.11786.1 ID=prot_H-elongata_contig46874.11786.1|Name=mRNA_H-elongata_contig46874.11786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWID
GEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVND
LLACDKVRLSLGGGRVEGVLWHNI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035420Spt6_SH2
IPR036860SH2_dom_sf
IPR017072TF_Spt6