mRNA_H-elongata_contig46874.11786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46874.11786.1
Unique NamemRNA_H-elongata_contig46874.11786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: D8LQN5_ECTSI (Similar to putative chromatin structure regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 5.740e-50
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:   10 VHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDK 318
            +HP F+N    EAE+ L E S +RGEA+IRPSSKGPDHLSLTWMW++GEFMHTDI+E+GKQ G+ LAP LKI GEEYEDLDEIISRRVSACNDLVNDLLA DK
Sbjct:    1 MHPQFKNFTHLEAEEFLKEMSDTRGEAVIRPSSKGPDHLSLTWMWVEGEFMHTDIKELGKQPGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLASDK 103
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A2A4IUW9_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IUW9_HELVI)

HSP 1 Score: 109 bits (272), Expect = 2.050e-25
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R IVHP F N+ F+EAEK++ + +  +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+    L  DL+A  K    LGG R
Sbjct:  165 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIAY-KYYKPLGGMR 276
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI00067CC25C (transcription elongation factor SPT6-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067CC25C)

HSP 1 Score: 105 bits (261), Expect = 5.180e-25
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGRVEGVLW 363
            R IVHP F N+ F+EAEK++      +GE ++RPSSKG DHL++TW   DG   H D++E GK+   +L   L I+G E+EDLDEII+R V+       DL+A  K    LGG R +   W
Sbjct:   34 RVIVHPAFHNISFAEAEKLMENMV--QGEVIVRPSSKGSDHLTVTWKVADGICQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAY-KYYKPLGGMRDKAEEW 151
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI0003598DB2 (transcription elongation factor SPT6 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0003598DB2)

HSP 1 Score: 107 bits (268), Expect = 1.070e-24
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R I HP F NV + E EK+L+     +G+ ++RPSSKG DHL+ TW   DG   H DI+E GK+   +L  CL I  EEYEDLDEII+R +      V DL+A    R S GG R
Sbjct: 1330 RVIAHPYFHNVSYKECEKLLANMD--QGDVIVRPSSKGSDHLTATWKVADGILQHVDIREEGKENAFSLGRCLWIGTEEYEDLDEIIARHIQPMAATVRDLMAFKYYRDSEGGKR 1442
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI001F9BC97C (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9BC97C)

HSP 1 Score: 107 bits (267), Expect = 1.450e-24
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R IVHP F N+ F+EAEK++ +    +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+    L  DL+   K    LGG R
Sbjct: 1224 RVIVHPAFHNISFAEAEKLMEKMG--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIGY-KYYKPLGGMR 1335
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: UPI001401C2BD (transcription elongation factor SPT6 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401C2BD)

HSP 1 Score: 104 bits (260), Expect = 1.540e-24
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGG 339
            R IVHP+F N+++ EAE +++     +GEA+IRPSSKG DHL++TW   +G   H D++E  K+   +L   L I GEE+EDLDEII+R V     L  DLL+    R S GG
Sbjct:   83 RVIVHPSFHNINYKEAEALMATLD--QGEAVIRPSSKGTDHLTVTWKVAEGVSQHLDVREERKENPFSLGHSLWINGEEFEDLDEIIARHVQPMASLARDLLSHKYYRESTGG 193
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A8K0JYX8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JYX8_LADFU)

HSP 1 Score: 106 bits (265), Expect = 2.710e-24
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R IVHP+F N+ + EAEKI+ +    +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I  EE+EDLDEII+R V+     V D L+    R + GG R
Sbjct: 1193 RVIVHPSFHNISYKEAEKIMEQMD--QGEVIVRPSSKGADHLTVTWKVTDGIYQHVDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARYVNPMAAHVRDALSFRYYRETGGGNR 1305
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: V4ALE7_LOTGI (Transcription elongation factor spt6 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ALE7_LOTGI)

HSP 1 Score: 106 bits (264), Expect = 3.680e-24
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R IVHP+F N+ ++E EK+++     +GE +IRPSSKG DHL++TW   DG   H D++E GK+   +L   L I  EE+EDLDEII+R V     L  D+L     R S GG R
Sbjct: 1315 RVIVHPSFHNISYAECEKLMANVE--QGEVMIRPSSKGADHLTVTWKVADGILQHIDVREEGKENAFSLGRSLLIGNEEFEDLDEIIARHVQPMAALARDILGFRYYRDSEGGKR 1427
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A0A6J2JLV1_BOMMA (Transcription elongation factor spt6 n=2 Tax=Bombyx TaxID=7090 RepID=A0A6J2JLV1_BOMMA)

HSP 1 Score: 106 bits (264), Expect = 3.700e-24
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGR 345
            R IVHP F N+ F+EAEK++ + +  +GE ++RPSSKG DHL++TW   DG + H D++E GK+   +L   L I+G E+EDLDEII+R V+       DL+A  K    LGG R
Sbjct: 1327 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVTDGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAY-KYYKPLGGIR 1438
[Close]
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Match: A7SRR7_NEMVE (Transcription elongation factor spt6 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SRR7_NEMVE)

HSP 1 Score: 105 bits (263), Expect = 5.020e-24
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:    1 RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWIDGEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVNDLLACDKVRLSLGGGRVE 351
            R IVHP F+N+ F EAE+ILSE    +GE+++RPSSKG DHL++TW    G + H DI+E GK+   +L   L I  EE+EDLDEII+R +     L  ++L     R + GG + +
Sbjct: 1176 RVIVHPAFRNISFKEAERILSELD--QGESIVRPSSKGSDHLTVTWKVDQGIYQHIDIREEGKENAFSLGHSLWIDTEEFEDLDEIIARHIQPMAALAREILNHKYYRAADGGSKAK 1290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46874.11786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN5_ECTSI5.740e-5076.70Similar to putative chromatin structure regulator ... [more]
A0A2A4IUW9_HELVI2.050e-2547.83Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
UPI00067CC25C5.180e-2545.45transcription elongation factor SPT6-like n=1 Tax=... [more]
UPI0003598DB21.070e-2447.83transcription elongation factor SPT6 isoform X1 n=... [more]
UPI001F9BC97C1.450e-2446.96Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI001401C2BD1.540e-2446.90transcription elongation factor SPT6 n=1 Tax=Petro... [more]
A0A8K0JYX8_LADFU2.710e-2446.09Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
V4ALE7_LOTGI3.680e-2446.09Transcription elongation factor spt6 n=1 Tax=Lotti... [more]
A0A6J2JLV1_BOMMA3.700e-2446.96Transcription elongation factor spt6 n=2 Tax=Bomby... [more]
A7SRR7_NEMVE5.020e-2445.30Transcription elongation factor spt6 n=2 Tax=Nemat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46874contigH-elongata_contig46874:463..1661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.9e-39
Seed eggNOG ortholog2880.D8LQN5
Preferred nameSPT6
KEGG koko:K11292
GOsGO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000228,GO:0000278,GO:0000414,GO:0000429,GO:0000430,GO:0000433,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000988,GO:0000990,GO:0000991,GO:0001073,GO:0001178,GO:0001672,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005739,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007154,GO:0007584,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009299,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010847,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016584,GO:0016973,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0030447,GO:0030466,GO:0030702,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031440,GO:0031445,GO:0031454,GO:0031491,GO:0031497,GO:0031503,GO:0031554,GO:0031564,GO:0031618,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033554,GO:0034243,GO:0034502,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035065,GO:0035067,GO:0035327,GO:0036170,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042393,GO:0042594,GO:0042789,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043254,GO:0043618,GO:0043620,GO:0043933,GO:0043954,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044382,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045013,GO:0045014,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051570,GO:0051574,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060260,GO:0060303,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070827,GO:0070887,GO:0071103,GO:0071166,GO:0071168,GO:0071426,GO:0071427,GO:0071440,GO:0071441,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071931,GO:0080090,GO:0080134,GO:0090033,GO:0090304,GO:0097355,GO:0097659,GO:0098687,GO:0140110,GO:1900049,GO:1900050,GO:1900109,GO:1900111,GO:1900112,GO:1900114,GO:1900428,GO:1900430,GO:1900434,GO:1900436,GO:1900443,GO:1900445,GO:1901360,GO:1901362,GO:1901576,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903047,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.obsolete transcription factor activity, core RNA polymerase II binding
EggNOG OGsCOG2183@1,KOG1856@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46874.11786.1prot_H-elongata_contig46874.11786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46874 463..1661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930774.25407-CDS-H-elongata_contig46874:462..5281622930774.25407-CDS-H-elongata_contig46874:462..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 463..528 +
1691679564.3440952-CDS-H-elongata_contig46874:462..5281691679564.3440952-CDS-H-elongata_contig46874:462..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 463..528 +
1622930774.2657356-CDS-H-elongata_contig46874:1019..11301622930774.2657356-CDS-H-elongata_contig46874:1019..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 1020..1130 +
1691679564.353966-CDS-H-elongata_contig46874:1019..11301691679564.353966-CDS-H-elongata_contig46874:1019..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 1020..1130 +
1622930774.2804663-CDS-H-elongata_contig46874:1463..16611622930774.2804663-CDS-H-elongata_contig46874:1463..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 1464..1661 +
1691679564.361302-CDS-H-elongata_contig46874:1463..16611691679564.361302-CDS-H-elongata_contig46874:1463..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46874 1464..1661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46874.11786.1

>prot_H-elongata_contig46874.11786.1 ID=prot_H-elongata_contig46874.11786.1|Name=mRNA_H-elongata_contig46874.11786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
RGIVHPNFQNVDFSEAEKILSETSGSRGEALIRPSSKGPDHLSLTWMWID
GEFMHTDIQEVGKQQGTALAPCLKIKGEEYEDLDEIISRRVSACNDLVND
LLACDKVRLSLGGGRVEGVLWHNI*
back to top

mRNA from alignment at H-elongata_contig46874:463..1661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46874.11786.1 ID=mRNA_H-elongata_contig46874.11786.1|Name=mRNA_H-elongata_contig46874.11786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1199bp|location=Sequence derived from alignment at H-elongata_contig46874:463..1661+ (Himanthalia elongata Himel1 dioecious)
CGGGGAATAGTTCACCCAAACTTCCAGAATGTCGACTTCAGTGAGGCGGA
GAAGATCCTCTCCGAGGTAACACTTCAAAAGAGGCGACTAATAGTATAAA
TATTATAGATGCTTTATATGCGTCGAAGCATGGTATAATTCACCATCTGT
CCTTCCTGGGTATCGATGGGGGAATGCCGTGGTATAACAGACATCCGCCT
TTTTCTCGGTGAGGTCGATCTCTGAGAAGATTGTGGACTGTATTGGCTGC
ATCGTTTCTCCCTTTCCCCAGATAATACATTCCCCTCACCCCTAACCCCT
CGCTGTTGTTCCGTAGAATGGTACGTGACACATAAAATTATTGTGTACCC
TGGCATGATGTTGTTCATTGGCCGGCGTTTTTTTCCTGGCCGGCTTCATC
TCTCGAATCGCTAGTTTTTTGCTCATCTCCTCTCCTCTCCTTTCCTTCCC
CGCGTTGATCCCCTATTGGTCGACTGGCTTTGTTGGTCCGTTGATTCGTG
ACTGGGGGATGTTTATGCTCACGGTTCGATGTGTGGTGTTCTGTGTTCGG
TGTACAGACCAGCGGCTCTCGAGGGGAAGCTCTGATCCGACCGTCCAGCA
AGGGGCCCGATCACCTGTCGCTGACTTGGATGTGGATCGATGGGGAGTTC
ATGCACACCGACATACAGGTGAGACCTGAGACAGACGGTGACAATCCCTA
GTCTAGTGTATGCACCTGATGAAAAGTGTCTATCTTGTAGTATCTTGTAG
TTCTAGGACAGGTTGCTGGTGACGCTGACGGTGACGGTTATCATTTACGA
GCGCCAGAGGAAATACCGCGGTTCACGGCGGCCCTAGAGAAGCAGGAACG
ACATGAAGAATAGACCTAGAGACTGGTAATGCGCCGCTTGTGTCAAACAA
ACTTTGGACGGGCAGGATTCCGGGTGAATATTCCCCCCTTCCCGCCGTGC
CGTGCCGTGCCGTATTTGAATTGTTTTTGAATGGTGTTTGGGTTAGCGCA
GGAGGTCGGCAAGCAACAGGGCACCGCGCTGGCTCCATGCCTCAAGATCA
AGGGAGAGGAATACGAAGACCTCGACGAGATCATCTCGAGGCGGGTGTCG
GCCTGTAACGATCTTGTGAACGATCTTTTAGCCTGCGATAAGGTGAGGCT
TTCTTTAGGGGGGGGGAGGGTCGAGGGCGTTTTGTGGCATAACATTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig46874:463..1661+

>mRNA_H-elongata_contig46874.11786.1 ID=mRNA_H-elongata_contig46874.11786.1|Name=mRNA_H-elongata_contig46874.11786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig46874:463..1661+ (Himanthalia elongata Himel1 dioecious)
CGGGGAATAGTTCACCCAAACTTCCAGAATGTCGACTTCAGTGAGGCGGA
GAAGATCCTCTCCGAGCGGGGAATAGTTCACCCAAACTTCCAGAATGTCG
ACTTCAGTGAGGCGGAGAAGATCCTCTCCGAGACCAGCGGCTCTCGAGGG
GAAGCTCTGATCCGACCGTCCAGCAAGGGGCCCGATCACCTGTCGCTGAC
TTGGATGTGGATCGATGGGGAGTTCATGCACACCGACATACAGACCAGCG
GCTCTCGAGGGGAAGCTCTGATCCGACCGTCCAGCAAGGGGCCCGATCAC
CTGTCGCTGACTTGGATGTGGATCGATGGGGAGTTCATGCACACCGACAT
ACAGGAGGTCGGCAAGCAACAGGGCACCGCGCTGGCTCCATGCCTCAAGA
TCAAGGGAGAGGAATACGAAGACCTCGACGAGATCATCTCGAGGCGGGTG
TCGGCCTGTAACGATCTTGTGAACGATCTTTTAGCCTGCGATAAGGTGAG
GCTTTCTTTAGGGGGGGGGAGGGTCGAGGGCGTTTTGTGGCATAACATTT
GAGAGGTCGGCAAGCAACAGGGCACCGCGCTGGCTCCATGCCTCAAGATC
AAGGGAGAGGAATACGAAGACCTCGACGAGATCATCTCGAGGCGGGTGTC
GGCCTGTAACGATCTTGTGAACGATCTTTTAGCCTGCGATAAGGTGAGGC
TTTCTTTAGGGGGGGGGAGGGTCGAGGGCGTTTTGTGGCATAACATTTGA
back to top