mRNA_H-elongata_contig46739.11777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46739.11777.1
Unique NamemRNA_H-elongata_contig46739.11777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: D7FXG1_ECTSI (ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG1_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.580e-122
Identity = 189/197 (95.94%), Postives = 191/197 (96.95%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAESSN 591
            QPTLATDM ML ERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGD HYETARATQKLLQDYKGLQ+IIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSG HDDLPEGAFYMVGDIASV  KAKQLAES+N
Sbjct:  312 QPTLATDMGMLQERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDEHYETARATQKLLQDYKGLQEIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGAHDDLPEGAFYMVGDIASVGVKAKQLAESAN 508
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A836CJ45_9STRA (ATP synthase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ45_9STRA)

HSP 1 Score: 343 bits (881), Expect = 2.500e-114
Identity = 178/196 (90.82%), Postives = 182/196 (92.86%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAESS 588
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPR+IGD HY+ ARATQKLLQDYK LQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFV LEDTI GF+EILSG HDDLPE AFYMVGDI SV  KAK+LAESS
Sbjct:  311 QPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRIIGDEHYKVARATQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVKLEDTISGFKEILSGAHDDLPEAAFYMVGDITSVVAKAKKLAESS 506
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A7S2SJ94_9STRA (ATP synthase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ94_9STRA)

HSP 1 Score: 333 bits (853), Expect = 4.780e-110
Identity = 172/194 (88.66%), Postives = 177/194 (91.24%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAE 582
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IA LGIYPAVDPLDSTSRMLDPRV+GD HYE ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKG FVSLEDTIKGF EIL+G HDD+PE AFYM GDIA V E AK +A+
Sbjct:  317 QPTLATDMGALQERITSTQKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVLGDTHYEMARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGKFVSLEDTIKGFGEILAGEHDDIPEAAFYMKGDIAEVLESAKAMAQ 510
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A7S2GC43_9STRA (ATP synthase subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC43_9STRA)

HSP 1 Score: 322 bits (826), Expect = 5.360e-106
Identity = 166/192 (86.46%), Postives = 175/192 (91.15%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQL 576
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IA+LGIYPAVDPLDSTSRMLDP+VIG  HY+ ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPFTVAEVFTGTKG FVSL D+IKGF EI+SG HDD+PEGAFYM G+I SV E AK +
Sbjct:  317 QPTLATDMGGLQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIAQLGIYPAVDPLDSTSRMLDPKVIGSEHYDLARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFTVAEVFTGTKGEFVSLADSIKGFSEIISGAHDDVPEGAFYMKGNIESVLEAAKNM 508
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A1Z5JNL5_FISSO (ATP synthase subunit beta n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5JNL5_FISSO)

HSP 1 Score: 319 bits (818), Expect = 6.840e-105
Identity = 166/193 (86.01%), Postives = 172/193 (89.12%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLA 579
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPRVIG  HY+ ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPF VAEVFTGT G FVSLEDTI GF EI+SG +D LPEGAFYMVG+I  V  KA  +A
Sbjct:  307 QPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEDTINGFSEIISGAYDSLPEGAFYMVGNIEDVKAKASTMA 499
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A7S2EIC6_TRICV (ATP synthase subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIC6_TRICV)

HSP 1 Score: 319 bits (818), Expect = 6.840e-105
Identity = 165/189 (87.30%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKA 567
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRML PRVIGD HYE ARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQ+FMSQPF VAEVFTGT G FVSLE TI+GF++I++G HDDLPEGAFYMVG++  V EKA
Sbjct:  307 QPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRMLTPRVIGDEHYEVARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQKFMSQPFHVAEVFTGTAGKFVSLEQTIQGFKQIINGEHDDLPEGAFYMVGNVDEVKEKA 495
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A7R9UFC7_9STRA (ATP synthase subunit beta n=3 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7R9UFC7_9STRA)

HSP 1 Score: 319 bits (818), Expect = 2.860e-104
Identity = 164/196 (83.67%), Postives = 176/196 (89.80%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAESS 588
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPR++G+ HYE ARA QKLLQDYK LQDIIAILGMDELSEDDKLTVARARKV+RF+SQPF VAEVFTGT G FV+L+D+IK F+EILSG HD+LPEGAFYMVG I  V +KAK +A SS
Sbjct:  355 QPTLATDMGALQERITSTTKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRIVGEEHYELARAIQKLLQDYKSLQDIIAILGMDELSEDDKLTVARARKVERFLSQPFHVAEVFTGTPGKFVALDDSIKAFKEILSGAHDELPEGAFYMVGGIDDVIQKAKDMAASS 550
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: B7FS46_PHATC (ATP synthase subunit beta n=7 Tax=Sar TaxID=2698737 RepID=B7FS46_PHATC)

HSP 1 Score: 317 bits (811), Expect = 8.010e-104
Identity = 164/193 (84.97%), Postives = 173/193 (89.64%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLA 579
            QPTLATDM  L ERITST KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRMLDPRVIG  HY+ AR+TQKLLQDYK LQDIIAILGMDELSEDDKLTV+RARKVQ+FMSQPF VAEVFTGT G FVSLE TI GF +I++G +DDLPEGAFYMVGDI  V EKA Q+A
Sbjct:  308 QPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGQRHYDVARSTQKLLQDYKSLQDIIAILGMDELSEDDKLTVSRARKVQKFMSQPFHVAEVFTGTAGKFVSLEKTIDGFSQIINGDYDDLPEGAFYMVGDIEDVKEKAGQMA 500
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A7S3HGV8_9STRA (ATP synthase subunit beta n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HGV8_9STRA)

HSP 1 Score: 317 bits (813), Expect = 9.200e-104
Identity = 167/196 (85.20%), Postives = 174/196 (88.78%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAESS 588
            QPTLATDM +L ERITST  GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIG+ HY+TARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARK QRFMSQPF VAEVFTG  G FV LEDTIKGFQEILSG  D LPE AFYM G+I  V E A +LA ++
Sbjct:  335 QPTLATDMGLLQERITSTGVGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGEVHYQTARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKAQRFMSQPFHVAEVFTGRGGRFVQLEDTIKGFQEILSGKLDSLPESAFYMSGNIEEVKETAAKLAATA 530
[Close]
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Match: A0A2E5KQK4_9PROT (ATP synthase subunit beta n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KQK4_9PROT)

HSP 1 Score: 311 bits (798), Expect = 3.630e-102
Identity = 157/193 (81.35%), Postives = 172/193 (89.12%), Query Frame = 1 
Query:    1 QPTLATDMSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDIIAILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTIKGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLA 579
            QPTL TDM  L ERITSTNKGSITSVQA+YVPADDLTDPAPAT F+HLDATTVL+RQIAELGIYPAVDPLDSTSRMLDPR+IGD HYE AR  Q++LQ YK LQDIIAILGMDELSEDDKLTV+RARK+QRF+SQPF VAEVFTG  GVFV LE+TI+GFQEI++G HDDLPE AFYMVG I  V EKAK++A
Sbjct:  281 QPTLGTDMGQLQERITSTNKGSITSVQAIYVPADDLTDPAPATAFSHLDATTVLNRQIAELGIYPAVDPLDSTSRMLDPRIIGDEHYEVAREVQRVLQTYKSLQDIIAILGMDELSEDDKLTVSRARKLQRFLSQPFHVAEVFTGHAGVFVPLEETIRGFQEIVAGKHDDLPEAAFYMVGTIDDVVEKAKEMA 473
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46739.11777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG1_ECTSI2.580e-12295.94ATP synthase subunit beta n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ45_9STRA2.500e-11490.82ATP synthase subunit beta n=1 Tax=Tribonema minus ... [more]
A0A7S2SJ94_9STRA4.780e-11088.66ATP synthase subunit beta n=1 Tax=Rhizochromulina ... [more]
A0A7S2GC43_9STRA5.360e-10686.46ATP synthase subunit beta n=1 Tax=Florenciella par... [more]
A0A1Z5JNL5_FISSO6.840e-10586.01ATP synthase subunit beta n=2 Tax=Bacillariophycid... [more]
A0A7S2EIC6_TRICV6.840e-10587.30ATP synthase subunit beta n=1 Tax=Trieres chinensi... [more]
A0A7R9UFC7_9STRA2.860e-10483.67ATP synthase subunit beta n=3 Tax=Pinguiochrysidac... [more]
B7FS46_PHATC8.010e-10484.97ATP synthase subunit beta n=7 Tax=Sar TaxID=269873... [more]
A0A7S3HGV8_9STRA9.200e-10485.20ATP synthase subunit beta n=2 Tax=Eukaryota TaxID=... [more]
A0A2E5KQK4_9PROT3.630e-10281.35ATP synthase subunit beta n=1 Tax=Alphaproteobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46739contigH-elongata_contig46739:1524..4330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.6
Seed ortholog evalue5.8e-95
Seed eggNOG ortholog2880.D7FXG1
Preferred nameatpB
KEGG koko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000275,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0010035,GO:0010038,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046689,GO:0046933,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0055@1,KOG1350@2759
EC3.6.3.14
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, F1 complex beta subunit/V1 complex, C-terminal
Ec32 orthologEc-07_003080.1
Exons5
Model size594
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46739.11777.1prot_H-elongata_contig46739.11777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46739 1524..4309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930773.5111396-CDS-H-elongata_contig46739:1523..15831622930773.5111396-CDS-H-elongata_contig46739:1523..1583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 1524..1583 -
1691679564.0106902-CDS-H-elongata_contig46739:1523..15831691679564.0106902-CDS-H-elongata_contig46739:1523..1583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 1524..1583 -
1622930773.5305374-CDS-H-elongata_contig46739:1930..21521622930773.5305374-CDS-H-elongata_contig46739:1930..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 1931..2152 -
1691679564.0225096-CDS-H-elongata_contig46739:1930..21521691679564.0225096-CDS-H-elongata_contig46739:1930..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 1931..2152 -
1622930773.5463517-CDS-H-elongata_contig46739:2470..26261622930773.5463517-CDS-H-elongata_contig46739:2470..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 2471..2626 -
1691679564.0338836-CDS-H-elongata_contig46739:2470..26261691679564.0338836-CDS-H-elongata_contig46739:2470..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 2471..2626 -
1622930773.5616946-CDS-H-elongata_contig46739:2939..30591622930773.5616946-CDS-H-elongata_contig46739:2939..3059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 2940..3059 -
1691679564.0451722-CDS-H-elongata_contig46739:2939..30591691679564.0451722-CDS-H-elongata_contig46739:2939..3059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 2940..3059 -
1622930773.5787709-CDS-H-elongata_contig46739:4294..43091622930773.5787709-CDS-H-elongata_contig46739:4294..4309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 4295..4309 -
1691679564.0591063-CDS-H-elongata_contig46739:4294..43091691679564.0591063-CDS-H-elongata_contig46739:4294..4309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46739 4295..4309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930773.5921056-UTR-H-elongata_contig46739:4309..43301622930773.5921056-UTR-H-elongata_contig46739:4309..4330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46739 4310..4330 -
1691679564.072927-UTR-H-elongata_contig46739:4309..43301691679564.072927-UTR-H-elongata_contig46739:4309..4330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46739 4310..4330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46739.11777.1

>prot_H-elongata_contig46739.11777.1 ID=prot_H-elongata_contig46739.11777.1|Name=mRNA_H-elongata_contig46739.11777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MSMLLERITSTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQ
IAELGIYPAVDPLDSTSRMLDPRVIGDAHYETARATQKLLQDYKGLQDII
AILGMDELSEDDKLTVARARKVQRFMSQPFTVAEVFTGTKGVFVSLEDTI
KGFQEILSGMHDDLPEGAFYMVGDIASVAEKAKQLAESSN*
back to top

mRNA from alignment at H-elongata_contig46739:1524..4330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46739.11777.1 ID=mRNA_H-elongata_contig46739.11777.1|Name=mRNA_H-elongata_contig46739.11777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2807bp|location=Sequence derived from alignment at H-elongata_contig46739:1524..4330- (Himanthalia elongata Himel1 dioecious)
CAACCAACTCTCGCCACGGACATGAGTATGCTCCTGGTGGGGTGAGAGTC
ACTAGATGAAAAGCTAGAGGTCAAAATCCTCCCCTCCTCTCGATGGTCAT
CACAGATAGCGAAGTAAGATCAACCGGATTTGGTTGCCTCCTGCTCGTGT
GCGGAGTAACTGGTAATTTTTCAGGGTTTTTGCTGTGAAACCGTCGCGGG
ATTTGATCGTGCTCAAGCCTGTTTGTATGTGAAATTGAAAATATGTTCCA
TCATCTGTAGTGATCCCTGTTAACCTATGGTGCAGTGTTGTGCAGTATTC
CCGTTTCTTCTGTTGACGGGTCGACACCGGCACCCCCTTTGGAGATATGA
AGTTCAAGTGTTTTCGAAGGCAGATGTTGTACGTAGAATATCTGGTGTAG
ATGAGTTAGTTGCCTCCCCTCTGCTTGGTGGCTCTTTTGTGCTCTGCGCC
TTTCGTAATGGTGCCTTTTTCTGCAACCGCCCGTCCCCGCCCCTCATGTG
GCTGTTGTGGCATGAAGCTGAAAATCTGCTAATTATGGGGCATAGGGGGG
GGGGGGTAGTTCGTGCTAGGTGTCCTGTGAGCTCAGAGGCCTTGGTCGAA
GAGGCTTGTCTCTTCCAAAATGGTTGAAGGGCATGTTATTCTACAGGAGG
ATGTGATGATAGACTGACTGCCGAACATTGAATAGTTGTAAAGAGTAGTA
TCATAGTAGTATTAATTCATCAAACGCCAAGAGCAGATTATAGTGGGAGT
GTATCAAACATCTACCGTTGTATGTGTTTTAGTGTGTGGTCTGCGTGCGG
CGCCTTTGCCTTTGAACCGAGAGGCCGAAGTCTCCCTGGCGGGACTTGGA
AAGCATATTCGATAACGCCTGCTGAAGGTGTAAAACTGGATAACATGGTG
TATCTAGGGTGATGACCAAAATGTGGTATAATACGCAGTCTGGCCAACGA
AAACCTGGCATCGCGCCGTCCCGGTGTTTTGGGAGTGCCTTGTGGTTTGG
TGTATGTCTGTTAGGGAGATGTGTTCAACACAAGAATAATCAACCACTAA
AAACGTTATTATTAATTTATATGAGATGGGTCTTTTAACATTGTCAGGCT
ATGCAAGAGCCTCCCGCCTTGCCTCCCACCGCAGCTTGAAGGGAACACTC
GCTTGAAGTACTGTACTGTAGTTGAATCCGTGTTTTCCCAGTGCTTCGCA
TGATCTCATGTAAAGTCGCCGTTTCGCGTGGACGCTTTTTCTTTCCCCCC
TCTCCCCCCTCCCCTTGCTAGGAACGCATCACATCAACTAACAAGGGATC
CATCACTTCCGTCCAAGCCGTCTACGTGCCCGCCGATGACCTGACGGATC
CTGCGCCTGCAACCACCTTCGCTCACCTTGACGCCACCACGGTATGGCAA
ATCGTATCGTATCCTGATATAACCGATTGATACATTGATGATCCATTCGT
GACCATATGAAGCTGGATCTTTATTTTCCGAACAAAGTTGAATGATCTGT
AGCACGTGCGTGGGGGGGGGGGTCGCCACCTTATCTCCCGCAGAGAGTTC
TCATAACTTTCTTTGTGACGCAGTGAAATGGTATTAGTAATAGTAATAAA
AAGGGCAAGTCATCATGTTTTTTATTTGATAAGTCTACAGACAACTCTTT
GGTTGTGATGCATTGGCGATGTTTCCCGCGCGGCGCGGTGCCTCTTTTAT
CCAGGTGCTTTCCCGTCAGATCGCCGAGCTCGGAATCTACCCGGCCGTGG
ACCCTCTCGACTCAACTTCGCGTATGCTTGATCCTCGCGTGATTGGCGAC
GCGCACTACGAGACCGCCCGTGCTACCCAGAAGCTTCTCCAGGACTACAA
GGGACTCCAGGTGATGCGTGACGGATGAAGTGTTGCGGTAGTCGATTCGT
TGAACTTTTTAGTGCTAAATGCGTCCGCCGAAATCACGAGTGTCCCTTGA
CGCCTTCCTTGGATATCTGTGCAAAGCTGTCGCTACGGTTGGCGAAGCGG
ACAAGCCGCTAAAATCGTATGCCGTAGTCGTTCAGGTTGGCGGGCGAGGG
GCGCTTGGTTTCATATGGCTAATCGTGCATAGATGTCGCGCGCGTCTTGA
TGACGGTGTCGTGTCAAAACCAGCTAGTGTTCTTCCGCGATATTAACTCC
CCCTAAACGACCGAAACGTGATCTCTAGGACATCATCGCCATCCTGGGAA
TGGACGAGCTGTCGGAAGACGACAAGCTCACTGTGGCAAGGGCGCGCAAG
GTGCAGCGTTTCATGTCGCAGCCGTTTACCGTGGCCGAGGTCTTCACGGG
CACCAAGGGTGTTTTCGTTTCACTCGAGGACACCATCAAGGGCTTCCAGG
AAATCCTCTCGGGGATGCACGACGACCTGCCGGAGGGTGCTTTCTACATG
GTGGGTAGAGGTTTTCGTGTTTAGGGTTTCTATTTTTATTTGGATGTTGT
TTTGGGGGTTTCCGGGGCAAGCCTCAAGCGCACGTGCTCTCATTTTTCTG
TTGTCGACGAGTCTAGAATGGTCATGTTTCGCAGAAAAATGTTTCACGTG
AGCAAGTTTTTGCGGCATGGATCATTGAGCTCCCACACCCCCCCTCCCCC
CCCTCCGTTGTTTTAGATCGCCTAACTTTGGAATGTTCCACTGTGCTGGG
TTTTGCGTTCGAGCAACCGAAAATAGAGACGGGACCTCTTTTTAACATTA
ACACGACCATTCGTATCGCTCGATTTGCCGTTGGCTTTTCCTTTCAGGTG
GGTGATATTGCTTCAGTCGCAGAGAAGGCTAAGCAACTCGCGGAGAGCTC
CAACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig46739:1524..4330-

>mRNA_H-elongata_contig46739.11777.1 ID=mRNA_H-elongata_contig46739.11777.1|Name=mRNA_H-elongata_contig46739.11777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig46739:1524..4330- (Himanthalia elongata Himel1 dioecious)
ATGAGTATGCTCCTGATGAGTATGCTCCTGGAACGCATCACATCAACTAA
CAAGGGATCCATCACTTCCGTCCAAGCCGTCTACGTGCCCGCCGATGACC
TGACGGATCCTGCGCCTGCAACCACCTTCGCTCACCTTGACGCCACCACG
GAACGCATCACATCAACTAACAAGGGATCCATCACTTCCGTCCAAGCCGT
CTACGTGCCCGCCGATGACCTGACGGATCCTGCGCCTGCAACCACCTTCG
CTCACCTTGACGCCACCACGGTGCTTTCCCGTCAGATCGCCGAGCTCGGA
ATCTACCCGGCCGTGGACCCTCTCGACTCAACTTCGCGTATGCTTGATCC
TCGCGTGATTGGCGACGCGCACTACGAGACCGCCCGTGCTACCCAGAAGC
TTCTCCAGGACTACAAGGGACTCCAGGTGCTTTCCCGTCAGATCGCCGAG
CTCGGAATCTACCCGGCCGTGGACCCTCTCGACTCAACTTCGCGTATGCT
TGATCCTCGCGTGATTGGCGACGCGCACTACGAGACCGCCCGTGCTACCC
AGAAGCTTCTCCAGGACTACAAGGGACTCCAGGACATCATCGCCATCCTG
GGAATGGACGAGCTGTCGGAAGACGACAAGCTCACTGTGGCAAGGGCGCG
CAAGGTGCAGCGTTTCATGTCGCAGCCGTTTACCGTGGCCGAGGTCTTCA
CGGGCACCAAGGGTGTTTTCGTTTCACTCGAGGACACCATCAAGGGCTTC
CAGGAAATCCTCTCGGGGATGCACGACGACCTGCCGGAGGGTGCTTTCTA
CATGGACATCATCGCCATCCTGGGAATGGACGAGCTGTCGGAAGACGACA
AGCTCACTGTGGCAAGGGCGCGCAAGGTGCAGCGTTTCATGTCGCAGCCG
TTTACCGTGGCCGAGGTCTTCACGGGCACCAAGGGTGTTTTCGTTTCACT
CGAGGACACCATCAAGGGCTTCCAGGAAATCCTCTCGGGGATGCACGACG
ACCTGCCGGAGGGTGCTTTCTACATGGTGGGTGATATTGCTTCAGTCGCA
GAGAAGGCTAAGCAACTCGCGGAGAGCTCCAACTAAGTGGGTGATATTGC
TTCAGTCGCAGAGAAGGCTAAGCAACTCGCGGAGAGCTCCAACTAA
back to top