prot_H-elongata_contig11475.1177.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11475.1177.1
Unique Nameprot_H-elongata_contig11475.1177.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length318
Homology
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BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 2.630e-79
Identity = 150/317 (47.32%), Postives = 192/317 (60.57%), Query Frame = 0 
Query:    1 QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHCCGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPASRELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEEICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDHVAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQVMISTHMEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLESLQKPKKRGAGSLWRAGM 317
            +FSVSF SGIRRASSLT SL +RLGPP  ++    Q   + + + D      D+ ++   ++RCPECA  L    IV+HIRSTCRL+PCT C  LLLPA RE HV+E C NR + C  C G+A+ + EFARH  +  C  R  PC+AC + C ADEL+EH A                                          C N+ W C CG+    L++R  HLK C+AFIDAWEASIE+VMI+T +E+P LALLALAES GN S AA+++  ER Y++EL LA D VN  VFL++L KP KRG+G+LWRAG+
Sbjct:  644 EFSVSFSSGIRRASSLTPSLEVRLGPPKASL---EQVADVTDGNTD------DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTHCSRLLLPADRERHVEEACPNRRRSCMRC-GEAVVVSEFARHEAEGGCARRVVPCAACGDFCPADELREHGA-------------REXXXXXXXXXXXXXXXXXXXXXXXXXXXCRNMTWACGCGEGPFALSERPAHLKTCNAFIDAWEASIEKVMIATRVENPGLALLALAESRGNVSLAARRVTDERAYINELCLAADIVNVEVFLKALTKPGKRGSGALWRAGL 937
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BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.960e-76
Identity = 149/333 (44.74%), Postives = 194/333 (58.26%), Query Frame = 0 
Query:    1 QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHCCGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPASRELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEEICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDHVAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQV----------------MISTHMEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLESLQKPKKRGAGSLWRAGM 317
            +FSVSFPSGIRRASSLT SL +RLGPP  ++    Q   + + + D      D+ ++   ++RCPECA  L    IV+HIRSTCRL+PCTLC  LLLPA RE HV+E C NR + C  C G+A+ + EFARH  +  C  R  P     + C AD+ +EH                            GM        +H + LC N+ W C CG+    L++R +HLK CDAFIDAWEASIE+V                MI+T +EDP +ALLALAES G+ S AA+++A +R Y+DEL LA D VN  VFL +L+KP KR +G+LW AG+
Sbjct:  419 EFSVSFPSGIRRASSLTPSLEVRLGPPKASL---EQVAGVTDGNTD------DRASDGDGLIRCPECAELLRSSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC-GEAVVVSEFARHEAEGGCARRVVPXXXXXDFCPADDFREH----------------------------GMA-------EHASSLCRNMTWACGCGEGPFALSERPEHLKTCDAFIDAWEASIEKVIARMPKIEVVRKIGKVMIATRVEDPGVALLALAESRGSVSLAARRVADKRAYIDELCLAADIVNVEVFLRALRKPGKRVSGALWCAGL 706
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11475.1177.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF73_ECTSI2.630e-7947.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7C1_9PHAE1.960e-7644.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 176..213
e-value: 3.9E-5
score: 24.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 104..152
score: 9.125
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 176..213
score: 8.513
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 175..234
e-value: 1.6E-6
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11475contigH-elongata_contig11475:5746..8631 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11475.1177.1mRNA_H-elongata_contig11475.1177.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11475 5746..8631 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11475.1177.1 ID=prot_H-elongata_contig11475.1177.1|Name=mRNA_H-elongata_contig11475.1177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=318bp
QFSVSFPSGIRRASSLTSSLALRLGPPPPTVLAPAQTVSLDEKDEDCGHC
CGDQKTEDSSVVRCPECAMFLPRRNIVRHIRSTCRLVPCTLCGCLLLPAS
RELHVQETCRNRLQCCHHCCGKAMTMREFARHHLKEDCGHRAAPCSACEE
ICFADELQEHKASCQNLPRGSKITANSCPERELQCSSCGMGVPARKLPDH
VAQLCPNLMWKCPCGKDSLPLAKRLDHLKKCDAFIDAWEASIEQVMISTH
MEDPALALLALAESGGNASSAAKKIAHERHYLDELHLAVDTVNTRVFLES
LQKPKKRGAGSLWRAGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD