prot_H-elongata_contig46617.11761.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46617.11761.1
Unique Nameprot_H-elongata_contig46617.11761.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length219
Homology
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 2.170e-121
Identity = 172/219 (78.54%), Postives = 191/219 (87.21%), Query Frame = 0
Query:    1 VEWHSGNKRQRQNFWTEVVHNACNGLLENDTTKGEEEFRGHLRRLTKENNVPRKRTKFDNYMAVTLGLEGDDRDKVSTRVWDAVDSRLKLEAGPGVDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            VEWHSG KRQRQ FWT+VVH AC  LL ++ T+GEEEFR HLRRLTKENNVPRKR+KF NY AVTLGLEG++ DKVS R+WD VD  LK E GPGVDCLLTRVQ+RWP ARHVHRLDQDTSGLVVMALT EAAREMCRQFRERVPSKTYTAV+EGRM KT KSGEV AK+RPD DNRP+QMF +E GNEA T W+R+KR++DRT VDFTPVTGRTHQ++
Sbjct:   60 VEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIR 278          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A7S2WNF9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNF9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.690e-29
Identity = 75/175 (42.86%), Postives = 113/175 (64.57%), Query Frame = 0
Query:   50 NVPRKRTKFDNYMAVTLGLEGDDRDKVSTRVWDAVDSRL-KLEAGPGV---DCLLTRVQARWP-TARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            +VPRK  KF +Y   +L +E  D   V  +VWD + S++ + EA  G+   D +L+RV+     TA  VHRLD +TSG+++++L  +  RE+ RQFRERV  KTY A+V G + + +  G+V   +  D D+RPRQ+ D+  G EA T ++ V+R +DRT+V+  PVTGRTHQ++
Sbjct:    5 SVPRKLVKFRSYAQRSLRIEAGD---VVEQVWDIISSKMAEEEAQEGLEETDSVLSRVKTHIDRTAVAVHRLDCETSGVMLVSLNVDVTRELGRQFRERVVQKTYFAMVHGVVDQDE--GQVSVPLSADPDHRPRQVVDEVKGKEATTTYRVVQRFEDRTKVELHPVTGRTHQLR 174          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A1M6B4V3_9RHOB (Pseudouridine synthase n=2 Tax=Shimia gijangensis TaxID=1470563 RepID=A0A1M6B4V3_9RHOB)

HSP 1 Score: 114 bits (285), Expect = 5.630e-28
Identity = 68/141 (48.23%), Postives = 88/141 (62.41%), Query Frame = 0
Query:   84 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            VD    L + PG      DCLLTR+Q  +PTA  VHRLD+DTSG++V  LTP A R +  QF +R   KTY A +EGRM   +KSG V   +  D +NRPRQM   + G +A T W+ +K  DD TRV  +P +GRTHQ++
Sbjct:   16 VDKPAGLLSVPGRGDHLADCLLTRLQVAFPTALLVHRLDRDTSGVLVFGLTPHAQRNLSMQFEKRSTKKTYVARLEGRME--EKSGTVDLPLIVDWENRPRQMVCHDTGKQAVTDWRVLKVSDDDTRVRLSPKSGRTHQLR 154          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A7W2BME3_9HYPH (RNA pseudouridine synthase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BME3_9HYPH)

HSP 1 Score: 114 bits (285), Expect = 9.260e-28
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = 0
Query:   84 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            +D    L + PG     +DCL+TR+  R+P AR VHRLD DTSG++V+A+ P A R +  QF  R   KTY A+V+G +     SG V   IR D  NRPRQM D   G  A T WQ + REDDR+R+   P+TGR+HQ++
Sbjct:   36 IDKPCGLLSVPGKGDDRLDCLITRLHKRYPQARIVHRLDLDTSGVMVIAMNPAAHRHLGLQFERRHVEKTYIALVDGNVAAD--SGRVDLPIRVDWPNRPRQMIDHAEGRSAVTDWQVLAREDDRSRIALRPLTGRSHQLR 174          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A099F4N7_9RHOB (Pseudouridine synthase n=1 Tax=Paracoccus halophilus TaxID=376733 RepID=A0A099F4N7_9RHOB)

HSP 1 Score: 114 bits (284), Expect = 9.460e-28
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 0
Query:   97 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            DCL+ R++A +PT   VHRLD DTSG++V ALTPEA R + RQF ER   KTY A + GR+    K+G V   +  D  NRPRQM D++ G  ART W+ V+ +D  TRV  +PVTGR+HQ++
Sbjct:   42 DCLIARLRAAFPTILLVHRLDLDTSGVMVFALTPEAQRHLSRQFEERRTKKTYVARLWGRLQ--PKTGTVDLPLIVDWPNRPRQMVDRDRGRPARTDWRVVRADDMETRVRLSPVTGRSHQLR 162          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A1G3AV14_9BACT (Pseudouridine synthase n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A1G3AV14_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.180e-27
Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 0
Query:   97 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            DCL+ RVQ R+P AR VHRLD  TSGL+V+A  PE+ RE+ RQF+ R   KTY A V G     + SGEV   +R D + RP Q+ D + G  A+T WQ ++R +D  R++ TPVTGRTHQ++
Sbjct:   49 DCLIHRVQKRFPKARIVHRLDFSTSGLMVIAQNPESHRELSRQFQNRETEKTYVAKVYG--CPDEPSGEVNLPLRCDLERRPLQIIDYQQGKTAQTFWQILERYEDSCRMELTPVTGRTHQLR 169          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: UPI00106F1B88 (RluA family pseudouridine synthase n=2 Tax=Paracoccus TaxID=265 RepID=UPI00106F1B88)

HSP 1 Score: 113 bits (283), Expect = 1.330e-27
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 0
Query:   84 VDSRLKLEAGPG-----VDCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            VD    L + PG      DCL+ R++A +PT   VHRLD DTSG++V ALTP A R + +QF  R   K+Y A V GRM +   +G V A +  D  NRPRQM D E G  ART W+ ++  DD TRV   P+TGR+HQ++
Sbjct:   24 VDKPAGLLSVPGRGEDRADCLIARLRAAFPTVLLVHRLDLDTSGVMVFALTPHAQRHLNQQFERRQVKKSYVARVHGRMDRP--TGTVEAALIVDWPNRPRQMIDPENGRPARTDWRVIRASDDETRVRLFPLTGRSHQLR 162          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A2Z4UKY3_9HYPH (Ribosomal large subunit pseudouridine synthase A n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UKY3_9HYPH)

HSP 1 Score: 113 bits (283), Expect = 1.580e-27
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 0
Query:   97 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            DCL TR +  +PTA  VHRLD DTSG++VMA+TP A R +  QF +R   KTYTA V G+MT+ +  G VVA I  D  NRPRQM D E G  A T WQ + RE   +RV   P TGR+HQ++
Sbjct:   48 DCLETRARIEFPTATIVHRLDMDTSGILVMAMTPNAHRHLGLQFEKRKTKKTYTARVWGKMTEDE--GTVVAPIITDWPNRPRQMIDFEKGRSAETRWQVLDREAGASRVALYPHTGRSHQLR 168          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: UPI00047597A7 (RluA family pseudouridine synthase n=1 Tax=Desulfovibrio oxyclinae TaxID=63560 RepID=UPI00047597A7)

HSP 1 Score: 113 bits (282), Expect = 1.780e-27
Identity = 61/126 (48.41%), Postives = 85/126 (67.46%), Query Frame = 0
Query:   97 DCLLTRVQARWPTARH---VHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            DC++TRVQ  +P  R    VHRLD DTSG++V+ LT  A RE+ +QF +R  SK Y A+++G +   ++ G V   +R D DNRP Q+ D E G  A TLW+R+  E+ RTRV+F P+TGRTHQ++
Sbjct:   36 DCVVTRVQEMFPECRKYPTVHRLDMDTSGILVLGLTARAQRELSQQFHDREVSKRYVALLDGVLE--EEEGRVDLPLRLDVDNRPYQVVDFERGKPATTLWKRIAIENGRTRVEFVPLTGRTHQLR 159          
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Match: A0A2D5B3Y4_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B3Y4_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.790e-27
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 0
Query:   97 DCLLTRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYTAVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKREDDRTRVDFTPVTGRTHQVQ 219
            DCL +R +A +P AR VHRLD+DTSG++VMA   +  RE+ RQF +R   K Y AVV GR+   D  G + A +R D D+ PRQ+ D E G  A+T ++ ++R DDRTR++ +PVTGR+HQ++
Sbjct:   53 DCLASRAEAAFPGARIVHRLDRDTSGVIVMARDADTHRELSRQFHDREVDKQYEAVVGGRLAVDD--GVIDAPMRKDLDDPPRQIIDDEQGRSAKTGFRVIERMDDRTRMELSPVTGRSHQLR 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46617.11761.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI2.170e-12178.54Ribosomal large subunit pseudouridine synthase A n... [more]
A0A7S2WNF9_9STRA1.690e-2942.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1M6B4V3_9RHOB5.630e-2848.23Pseudouridine synthase n=2 Tax=Shimia gijangensis ... [more]
A0A7W2BME3_9HYPH9.260e-2846.81RNA pseudouridine synthase n=1 Tax=Hyphomicrobiale... [more]
A0A099F4N7_9RHOB9.460e-2851.22Pseudouridine synthase n=1 Tax=Paracoccus halophil... [more]
A0A1G3AV14_9BACT1.180e-2750.41Pseudouridine synthase n=2 Tax=unclassified Planct... [more]
UPI00106F1B881.330e-2746.81RluA family pseudouridine synthase n=2 Tax=Paracoc... [more]
A0A2Z4UKY3_9HYPH1.580e-2752.85Ribosomal large subunit pseudouridine synthase A n... [more]
UPI00047597A71.780e-2748.41RluA family pseudouridine synthase n=1 Tax=Desulfo... [more]
A0A2D5B3Y4_9BACT1.790e-2748.78RNA pseudouridine synthase n=1 Tax=Phycisphaerae b... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 73..219
e-value: 3.0E-32
score: 113.9
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 94..218
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 94..218
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 110..218
e-value: 7.4E-21
score: 74.9
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 113..127
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 95..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46617contigH-elongata_contig46617:102..1858 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46617.11761.1mRNA_H-elongata_contig46617.11761.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46617 102..1858 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46617.11761.1 ID=prot_H-elongata_contig46617.11761.1|Name=mRNA_H-elongata_contig46617.11761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
VEWHSGNKRQRQNFWTEVVHNACNGLLENDTTKGEEEFRGHLRRLTKENN
VPRKRTKFDNYMAVTLGLEGDDRDKVSTRVWDAVDSRLKLEAGPGVDCLL
TRVQARWPTARHVHRLDQDTSGLVVMALTPEAAREMCRQFRERVPSKTYT
AVVEGRMTKTDKSGEVVAKIRPDRDNRPRQMFDQEGGNEARTLWQRVKRE
DDRTRVDFTPVTGRTHQVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf