mRNA_H-elongata_contig114741.1174.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114741.1174.1
Unique NamemRNA_H-elongata_contig114741.1174.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A6H5KEF6_9PHAE (2-isopropylmalate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.650e-16
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            +VYS+AIEAGATTINVPDTVGYTTPKEF+GLMHHLR TVR
Sbjct:  279 EVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVR 318
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: D8LHU2_ECTSI (2-isopropylmalate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.640e-16
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            +VYS+AIEAGATTINVPDTVGYTTPKEF+GLMHHLR TVR
Sbjct:  135 KVYSVAIEAGATTINVPDTVGYTTPKEFMGLMHHLRGTVR 174
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A6V1NWK8_HETAK (2-isopropylmalate synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWK8_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 4.810e-12
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            +VYS+AIEAGATTINVPDTVGYTTP EF  LMH LR  VR
Sbjct:  231 EVYSVAIEAGATTINVPDTVGYTTPDEFYALMHKLRAGVR 270
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: R7QCD2_CHOCR (2-isopropylmalate synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCD2_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            +V+S AIEAGATTINVPDTVGYTTP EF  L+ +LR+ VR
Sbjct:  184 EVFSAAIEAGATTINVPDTVGYTTPSEFASLIRYLRRNVR 223
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A7S2UVN2_9STRA (2-isopropylmalate synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            QVYS+A+EAGATT+NVPDTVGYTTP+EF  L+  LR+ V+
Sbjct:  266 QVYSVAVEAGATTLNVPDTVGYTTPQEFFQLIQKLRRGVK 305
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: UPI001E1D3CFD (LOW QUALITY PROTEIN: 2-isopropylmalate synthase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3CFD)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTV 117
            QV+S+AI AGATTINVPDTVGYTTP+EF  L+ +LR T+
Sbjct:  368 QVFSVAIAAGATTINVPDTVGYTTPREFASLIRYLRATL 406
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            QVYS+A+EAGATT+NVPDTVGYTTP EF  L+  LR  V+
Sbjct:  340 QVYSVAVEAGATTLNVPDTVGYTTPSEFKALIRGLRANVK 379
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A7V9KG99_9CHLR (2-isopropylmalate synthase (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9KG99_9CHLR)

HSP 1 Score: 61.6 bits (148), Expect = 7.100e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTV 117
            QV++ AIEAGATT+NVPDTVGYTTP E+  LM HLR  V
Sbjct:  163 QVFTAAIEAGATTLNVPDTVGYTTPNEYAALMDHLRAQV 201
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A535IMC5_9CHLR (2-isopropylmalate synthase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IMC5_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTV 117
             ++ IAI AGATTINVPDTVGYTTP+EF  L+HHL+  V
Sbjct:  152 SIFEIAIAAGATTINVPDTVGYTTPEEFAALIHHLKAHV 190
[Close]
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Match: A0A4D9D6G1_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6G1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVR 120
            QVYS+A+EAGATT+NVPDTVGYTTP EF  L+  LR  V+
Sbjct:  192 QVYSVAVEAGATTLNVPDTVGYTTPSEFKALIRGLRAHVK 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114741.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEF6_9PHAE5.650e-1690.002-isopropylmalate synthase n=1 Tax=Ectocarpus sp. ... [more]
D8LHU2_ECTSI7.640e-1690.002-isopropylmalate synthase n=1 Tax=Ectocarpus sili... [more]
A0A6V1NWK8_HETAK4.810e-1280.002-isopropylmalate synthase n=1 Tax=Heterosigma aka... [more]
R7QCD2_CHOCR1.500e-1072.502-isopropylmalate synthase n=1 Tax=Chondrus crispu... [more]
A0A7S2UVN2_9STRA1.500e-1070.002-isopropylmalate synthase (Fragment) n=1 Tax=Fibr... [more]
UPI001E1D3CFD3.820e-1071.79LOW QUALITY PROTEIN: 2-isopropylmalate synthase-li... [more]
W7TP25_9STRA5.220e-1070.002-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
A0A7V9KG99_9CHLR7.100e-1071.792-isopropylmalate synthase (Fragment) n=1 Tax=Chlo... [more]
A0A535IMC5_9CHLR9.760e-1069.232-isopropylmalate synthase n=1 Tax=Chloroflexi bac... [more]
A0A4D9D6G1_9STRA9.760e-1070.002-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114741contigH-elongata_contig114741:404..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue6.6e-13
Seed eggNOG ortholog2880.D8LHU2
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
EggNOG free text desc.Belongs to the alpha-IPM synthase homocitrate synthase family
EggNOG OGsCOG0119@1,KOG2367@2759
Ec32 ortholog description2-Isopropylmalate synthase
Ec32 orthologEc-18_000460.1
EC2.3.3.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.3335736-CDS-H-elongata_contig114741:403..5411622929663.3335736-CDS-H-elongata_contig114741:403..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114741 404..541 -
1691679110.5172148-CDS-H-elongata_contig114741:403..5411691679110.5172148-CDS-H-elongata_contig114741:403..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114741 404..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114741.1174.1prot_H-elongata_contig114741.1174.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114741 404..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114741.1174.1

>prot_H-elongata_contig114741.1174.1 ID=prot_H-elongata_contig114741.1174.1|Name=mRNA_H-elongata_contig114741.1174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
QVYSIAIEAGATTINVPDTVGYTTPKEFIGLMHHLRKTVRCLLCR*
back to top

mRNA from alignment at H-elongata_contig114741:404..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114741.1174.1 ID=mRNA_H-elongata_contig114741.1174.1|Name=mRNA_H-elongata_contig114741.1174.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig114741:404..541- (Himanthalia elongata Himel1 dioecious)
CAGGTGTACTCTATCGCCATCGAGGCCGGGGCGACTACTATCAACGTTCC
TGACACGGTGGGGTACACCACTCCCAAGGAATTCATCGGGCTCATGCATC
ACTTGAGGAAGACGGTTAGGTGCTTATTATGTCGCTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig114741:404..541-

>mRNA_H-elongata_contig114741.1174.1 ID=mRNA_H-elongata_contig114741.1174.1|Name=mRNA_H-elongata_contig114741.1174.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig114741:404..541- (Himanthalia elongata Himel1 dioecious)
CAGGTGTACTCTATCGCCATCGAGGCCGGGGCGACTACTATCAACGTTCC
TGACACGGTGGGGTACACCACTCCCAAGGAATTCATCGGGCTCATGCATC
ACTTGAGGAAGACGGTTAGGTGCTTATTATGTCGCTAACAGGTGTACTCT
ATCGCCATCGAGGCCGGGGCGACTACTATCAACGTTCCTGACACGGTGGG
GTACACCACTCCCAAGGAATTCATCGGGCTCATGCATCACTTGAGGAAGA
CGGTTAGGTGCTTATTATGTCGCTAA
back to top