mRNA_H-elongata_contig114727.1172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114727.1172.1
Unique NamemRNA_H-elongata_contig114727.1172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 226 bits (577), Expect = 9.090e-66
Identity = 138/366 (37.70%), Postives = 202/366 (55.19%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEA--CRDSRKQIGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSC-FPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVT-----TTSIIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITYGG 1083
            EP T+ +A+AS EWPQW+ AI  ++      G W++ E+P    V+G+  VFK K D  G I KYK RLVAQGF Q+ G+ Y ++ +P    +SIR++ ++ A   WE  Q+DV  AYL  D+E E++++ P         +++  L K +YGL  A   W KK    F   GF  S  D  VF R      + ++ V VDDL +A A   DE   ++      F + DL +  + LG  I RDR   T+   Q  YI T++ +F +      TT+I PS     SL+   SP T  + ++MR I YRE +G+L++AA  TR D+S+A   L +F  NPG  HW AA++ ++YL  T++  +TYGG
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIA-ANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSF----SLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG 389          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 230 bits (586), Expect = 3.090e-65
Identity = 130/362 (35.91%), Postives = 213/362 (58.84%), Query Frame = 1
Query:    4 DPEPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQ--IGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTTTSI--IPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITY 1077
            D +P +  +A  S++   W +A+  ++D     GVW++V+  +    +G + VFK K D  G IE++K RLVA+GF Q +GI++ E+ SP   + S R++++++A    E  Q+DV  A+L  ++E E+++  PE   ++ K+  +  LKK++YGL  A   W KKF     + GF  +  D CV+ +++ G   + +++YVDD+L+A +  +  +     L S F +K+L +ASY LG  I RDR  G L   Q  YI  ++++FG+ T +   +P + G K L+K+  P+T+ E  EM  IPY  +VG+L++A   TR D+SFA   L +F  NPG  HW A ++ L+YL RT+D  + Y
Sbjct:  245 DNDPTSFKQATGSNDSDAWTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 224 bits (572), Expect = 3.320e-65
Identity = 127/363 (34.99%), Postives = 211/363 (58.13%), Query Frame = 1
Query:    1 LDPEPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPE--ACRDSRKQIGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTTTSI--IPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITY 1077
            L+ +PI++ + + SS   +W +A+  +M      GVW +VE PK    +G + +FK K D  G I +YK RLVA+GF Q +GI Y+E+ SP  ++ S R++++++A    E  Q+DV  A+L  +++  +Y+  PE     DS++ +  LK+++YGL  A   W +KF     + GF+ +  D C++ +   G+  +++V+YVDD+L+A +      + +R L S F +KDL  AS+ LG  I RDR+ G L   Q  YI  V+ +FG++  +    P A G K  S    P+ + E ++M + PY   VG+L++A   TR DI++    L ++  NPG  HW+ A++ ++YL RT+D  +TY
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDK-FSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY 363          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 226 bits (576), Expect = 6.640e-65
Identity = 132/365 (36.16%), Postives = 208/365 (56.99%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQ--IGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVF-RRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVT-----TTSIIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITYG 1080
            +P ++ +A  S+EWP+WK AI ++M    + G + +VE PK   ++G++ VF+ K + +  IE YK RLVAQGF Q+ GI + E+ +P    ASI ++L++ A   WE  Q+DV  AYL  D+E E+Y++ P    +  K+  +  LK+ +YGL  +   + KK   E  + G   S+ D CVF  R     ++++I + VDD  +A  TK       R++ + F + DL +  + LG  + RDR+  TL   QH YI  ++ +F +      TT + P    G  LS    P T  + E+M+ IPYRE++G+L++AA  TR DI++A   L +F  NPG  HW AA++  +YL  TR+  +T+G
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIA-GTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDP----GTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFG 470          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 217 bits (553), Expect = 1.910e-63
Identity = 121/359 (33.70%), Postives = 206/359 (57.38%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQ--IGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTTTS-IIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITY 1077
            +P +  +A  S +  +W  A+  +++      VW++VE       +G + V+K K+D +G +E++K RLVA+G+ Q +GI Y+E+ SP   + S+R+V++++A    E  Q+DV  A+L  ++  ++Y+  PE  +   K+  +  LKK+ YGL  A   W  KF    +  GF ++Q D C + + + G+   ++V+YVDD+L+A  +     ++ R L S F +KDL +ASY +G  I RDR +GTL   Q  YI  V+ ++ +   S ++     G        P+T+ E E+MR IPY  +VG++++A   TR DI++ A  L ++  NPG  HW+A ++ L+YL  T+D  +TY
Sbjct:   35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYLQGTKDYKLTY 392          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A2N9FET2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FET2_FAGSY)

HSP 1 Score: 220 bits (560), Expect = 3.830e-63
Identity = 132/362 (36.46%), Postives = 203/362 (56.08%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEA--CRDSRKQIGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTT--TSIIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITYGG 1083
            +P T  +A    +  +W  A+  + D     GVW++V+R +   V+G + +FKRK D  G++EK+K RLVA+G+ Q  G+ +EE+ SP     SI  +LS++A   +E  Q+DV  A+L  D+E ++Y+E PE    +    ++  L+K++YGL  A   W  KF       GF  + ++PCV+ R +H  VV+ + +YVDD+L+A       ++  + L   F +KDL +ASY LG  I RDR    L   Q  YI T++E+F +    +  IP     +SLS+ D P+ D E  + +  PY   VG+L++    TRLDI+FA   + +F  NPG  HW A Q   +YL RT+ L +TY G
Sbjct:   95 DPSTYSQAIKDFDSKKWISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSICAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKFHMVDCLSGRIP-YNNLRSLSQKDCPKNDQETLDPKLYPYASAVGSLMYLMICTRLDIAFAVGMVSRFQSNPGKMHWMAIQWIFRYLKRTKGLKLTYHG 454          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 227 bits (579), Expect = 7.110e-63
Identity = 129/359 (35.93%), Postives = 204/359 (56.82%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQIGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTTTSIIPSAAGGKSLSKSDSPQTDAEVEEMRQI---PYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITY 1077
            EP ++ +AQAS EWP+W++A+  + D     G W++ + PK +  +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++ E+Y+  PE   D   +I  L+K +YGL  +   W +K   E    G++  +ADPCV+        V +I V+VDDLL+   + +  E+  RDL   F + DL +    +G  I RDR AG ++  Q  YI+++++++ +   + +     G  L  + +   + E EE        Y  +VG+L++AA  TR DIS+A   L K+   P P HW AA++ L+YL  TRDL ITY
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV-----GMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRYLAGTRDLHITY 1259          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 227 bits (579), Expect = 7.150e-63
Identity = 134/365 (36.71%), Postives = 208/365 (56.99%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQ--IGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVF-RRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVT-----TTSIIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITYG 1080
            +P ++ +A  S+EWP+WK AI ++M    + G + +VE PK   ++G++ VF+ K + +G IE YK RLVAQGF Q+ GI + E+ +P    ASIR++L++ A   WE  Q+DV  AYL  D+E E+Y+  P    +  K+  +  LK+ +YGL  +   + KK   E  + G   S+ D CVF  R     ++++I + VDD  +A  TK       R++ + F + DL +  + LG  + RDR+A TL   Q  YI  ++ +F +      TT + P    G  LS    P T  + E+M+ IPYRE +G+L++AA  TR DI++A   L +F  NPG  HW AA++  +YL  TR+  +T+G
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIA-GTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDP----GTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFG 1280          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 220 bits (560), Expect = 8.870e-63
Identity = 137/363 (37.74%), Postives = 201/363 (55.37%), Query Frame = 1
Query:   10 EPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPEACRDSRKQIGL-LKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVT-----TTSIIPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITYG 1080
            EP+T  +A  S    QW+ A+  +M    + G W +VE P  +  +G++ V++ K   DG IE++K RLVA+GF Q  G  Y E+ + T  Q ++R VL++ A      R +D+  A++ +D++ E+Y+  PE  R    +I   L K++YGL  A  LW +K GI        I Q D           V V++ V+VDD+ +A  ++   ++ V  L   F ++DL   SY LG  ITR+R    L   Q QYI   +E+FG+T     TT + P+      LSKS SPQT  EVEEM +IPY   VG+L++ ATMTR DI++ A  L +FN NPG  HW+A +  L+YL  T D+ + YG
Sbjct:  103 EPVTYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLKQAPRLWDEKLGI-------YIYQNDN----------VKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNLI----LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYG 444          
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Match: A0A438II97_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438II97_VITVI)

HSP 1 Score: 222 bits (565), Expect = 1.100e-62
Identity = 126/363 (34.71%), Postives = 208/363 (57.30%), Query Frame = 1
Query:    1 LDPEPITMGKAQASSEWPQWKRAITRKMDGQTARGVWQVVERPK*KTVLGTRVVFKRKIDKDGRIEKYKFRLVAQGFRQLKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEGEMYVELPE--ACRDSRKQIGLLKKAMYGLVHARLLW*KKFGIEFEAKGFQISQADPCVFRRILHGAVVVVIVVYVDDLLVACATKRDEEQAVRDLCSCFPIKDLEKASYYLGCHITRDRNAGTLKFDQHQYIQTVVEQFGVTTTSI--IPSAAGGKSLSKSDSPQTDAEVEEMRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQALQYLWRTRDLGITY 1077
            L+ +PI++ + + SS   +W  A+  +M      GVW +VE PK    +G + +FK K D  G I +YK RLVA+GF Q +GI Y+E+ SP  ++ S R++++++A    E  Q+DV   +L  + +  +Y+  PE    +DS++ +  LK+++YGL  A   W +KF     + GF+ +  D C++ +   G+  +++V+YVDD+L+A +      +  R L S F +KDL  AS+ LG  I RDR+ G L   Q  YI  V+ +FG++  ++   P A G K  S    P+ + E + M + PY   VG+L++A   TR DI++    L ++  NPG  HW+ A++ ++YL RT+D  +TY
Sbjct:  186 LEDDPISVSQVKQSSNSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTTFLNGNTDETIYMVQPENFESKDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCALGDTPVAKGDK-FSLHQCPKNELEKKNMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY 546          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114727.1172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM9.090e-6637.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH3.090e-6535.91Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A438HUL4_VITVI3.320e-6534.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GP19_9APHY6.640e-6536.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NCI1_9ASTR1.910e-6333.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9FET2_FAGSY3.830e-6336.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY7.110e-6335.93Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401GN13_9APHY7.150e-6336.71Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
E2LZP6_MONPE8.870e-6337.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438II97_VITVI1.100e-6234.71Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114727contigH-elongata_contig114727:1010..2092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog67593.Physo130920
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1083
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.1770084-UTR-H-elongata_contig114727:1009..18971622929663.1770084-UTR-H-elongata_contig114727:1009..1897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114727 1010..1897 +
1691679110.4649906-UTR-H-elongata_contig114727:1009..18971691679110.4649906-UTR-H-elongata_contig114727:1009..1897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114727 1010..1897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.1975925-CDS-H-elongata_contig114727:1897..20921622929663.1975925-CDS-H-elongata_contig114727:1897..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114727 1898..2092 +
1691679110.47499-CDS-H-elongata_contig114727:1897..20921691679110.47499-CDS-H-elongata_contig114727:1897..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114727 1898..2092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114727.1172.1prot_H-elongata_contig114727.1172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114727 1898..2092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114727.1172.1

>prot_H-elongata_contig114727.1172.1 ID=prot_H-elongata_contig114727.1172.1|Name=mRNA_H-elongata_contig114727.1172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MRQIPYREIVGALIWAATMTRLDISFAAHQLVKFNDNPGPTHWRAAQQAL
QYLWRTRDLGITYGG
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mRNA from alignment at H-elongata_contig114727:1010..2092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114727.1172.1 ID=mRNA_H-elongata_contig114727.1172.1|Name=mRNA_H-elongata_contig114727.1172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig114727:1010..2092+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGATAACCATGGGCAAGGCGCAAGCGTCGTCGGAGTG GCCGCAATGGAAAAGGGCGATCACGCGCAAGATGGATGGTCAAACTGCTC GGGGCGTGTGGCAGGTGGTGGAGCGCCCAAAATGAAAGACGGTGTTGGGC ACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAA GTACAAATTTCGTCTCGTGGCGCAGGGTTTCAGGCAGCTCAAAGGCATAC ACTACGAAGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATG GTACTCAGCATGATCGCCGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGT CGACATGGCCTATCTGGAGGCCGATGTGGAGGGGGAGATGTACGTTGAGC TCCCGGAGGCATGCCGTGACTCCAGGAAGCAAATCGGCCTACTAAAGAAG GCAATGTACGGACTCGTCCACGCCAGACTGCTGTGGTAAAAAAAGTTCGG GATCGAGTTCGAGGCGAAGGGTTTCCAGATATCTCAAGCCGACCCATGCG TGTTCCGGCGGATTCTCCACGGGGCAGTGGTAGTCGTCATCGTGGTCTAC GTCGACGACCTGCTGGTTGCTTGTGCGACGAAACGTGACGAGGAGCAAGC GGTAAGGGACCTGTGCTCCTGTTTCCCAATCAAGGATCTGGAGAAGGCTT CATATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTG AAGTTCGACCAGCATCAGTACATACAGACTGTGGTGGAACAGTTTGGCGT GACGACGACCAGCATCATCCCGTCTGCGGCAGGAGGAAAATCCCTTTCAA AATCAGACAGCCCGCAGACGGACGCAGAGGTTGAAGAAATGCGCCAGATT CCCTACCGAGAAATCGTTGGGGCCCTAATATGGGCAGCGACGATGACCAG GCTCGACATTTCATTCGCTGCGCACCAACTGGTGAAATTCAACGACAACC CGGGACCGACACACTGGAGGGCAGCCCAGCAAGCGCTACAATATTTATGG CGCACTCGGGACCTCGGAATAACCTACGGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig114727:1010..2092+

>mRNA_H-elongata_contig114727.1172.1 ID=mRNA_H-elongata_contig114727.1172.1|Name=mRNA_H-elongata_contig114727.1172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig114727:1010..2092+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAATATGGGCAGC
GACGATGACCAGGCTCGACATTTCATTCGCTGCGCACCAACTGGTGAAAT
TCAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGCAAGCGCTA
CAATATTTATGGCGCACTCGGGACCTCGGAATAACCTACGGAGGGATGCG
CCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAATATGGGCAGCGACGA
TGACCAGGCTCGACATTTCATTCGCTGCGCACCAACTGGTGAAATTCAAC
GACAACCCGGGACCGACACACTGGAGGGCAGCCCAGCAAGCGCTACAATA
TTTATGGCGCACTCGGGACCTCGGAATAACCTACGGAGGG
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