mRNA_H-elongata_contig114715.1170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114715.1170.1
Unique NamemRNA_H-elongata_contig114715.1170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A6B3PPB5_9BACT (S8 family serine peptidase n=1 Tax=Flavihumibacter soli TaxID=2705549 RepID=A0A6B3PPB5_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 7.300e-11
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CD++VDD+T+I+EP F+DGTI+QAVD V   G  YF+SAGN+ N
Sbjct:  669 CDIIVDDITFITEPFFQDGTIAQAVDEVTNQGIAYFSSAGNYGN 712
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A6L4YSK5_9BACT (Subtilase family protease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6L4YSK5_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 7.300e-11
Identity = 25/42 (59.52%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNF 126
            CD++VDD+TYISEP FRDG +++AVD+V   G++YF++AGN+
Sbjct:  418 CDIIVDDITYISEPFFRDGIVARAVDSVTSLGTVYFSAAGNY 459
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: H8KUL0_SOLCM (Subtilase family protease n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) TaxID=929556 RepID=H8KUL0_SOLCM)

HSP 1 Score: 63.9 bits (154), Expect = 9.970e-11
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CDV+VDDVT+I+EP F+DG +SQAVD V   G  YF SAGNF N
Sbjct:  676 CDVIVDDVTFITEPFFQDGVVSQAVDQVSAQGVAYFTSAGNFGN 719
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: UPI001EF7FEB9 (S8 family serine peptidase n=2 Tax=Flavihumibacter TaxID=1004301 RepID=UPI001EF7FEB9)

HSP 1 Score: 63.9 bits (154), Expect = 9.980e-11
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CD+MVDD+T+I+EP F+DG ++QAVD V  AG  YF++AGN+ N
Sbjct:  685 CDIMVDDITFITEPFFKDGKVAQAVDQVTAAGVSYFSAAGNYGN 728
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A7C2RAP5_9BACE (Uncharacterized protein (Fragment) n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C2RAP5_9BACE)

HSP 1 Score: 63.9 bits (154), Expect = 9.980e-11
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNF 126
            CD++VDD+TYI+EP FRDG IS+A+D VV  G  +F+SAGNF
Sbjct:  222 CDIIVDDITYITEPFFRDGVISRAIDRVVSDGITFFSSAGNF 263
[Close]
BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A662BPY8_9BACT (Uncharacterized protein n=3 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A662BPY8_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CD++VDD+TYISEP  RDG ++QAV+ VV  G +YF +AGNF N
Sbjct:  418 CDIIVDDITYISEPFLRDGVVAQAVNDVVDLGVVYFTAAGNFGN 461
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BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A661YNS5_9BACT (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661YNS5_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CD++VDD+TYISEP  RDG ++QAV+ VV  G +YF +AGNF N
Sbjct:  418 CDIIVDDITYISEPFLRDGVVAQAVNDVVDLGVVYFTAAGNFGN 461
[Close]
BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A2S4ZZD0_9SPHI (Uncharacterized protein n=1 Tax=Solitalea longa TaxID=2079460 RepID=A0A2S4ZZD0_9SPHI)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CDVMVDDVT+I+EP F+DG ++QAV+ V   G  YF SAGNF N
Sbjct:  683 CDVMVDDVTFITEPFFQDGVVAQAVNEVSAQGVAYFTSAGNFAN 726
[Close]
BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A7J5W0W7_9BACT (Subtilase family n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7J5W0W7_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNF 126
            CD++VDD+TYISEP FRDG +++AVD+V   G  YF++AGN+
Sbjct:  417 CDIIVDDITYISEPFFRDGVVAKAVDSVASLGVAYFSAAGNY 458
[Close]
BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Match: A0A524GYJ8_9BACT (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524GYJ8_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 CDVMVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN 132
            CDV+VDD+TYI+ P FRDG +++AVD VV  G  +F+SAGNF N
Sbjct:  386 CDVIVDDITYITAPFFRDGVVAKAVDEVVAQGVTFFSSAGNFGN 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114715.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B3PPB5_9BACT7.300e-1161.36S8 family serine peptidase n=1 Tax=Flavihumibacter... [more]
A0A6L4YSK5_9BACT7.300e-1159.52Subtilase family protease n=1 Tax=Bacteroidetes ba... [more]
H8KUL0_SOLCM9.970e-1165.91Subtilase family protease n=1 Tax=Solitalea canade... [more]
UPI001EF7FEB99.980e-1159.09S8 family serine peptidase n=2 Tax=Flavihumibacter... [more]
A0A7C2RAP5_9BACE9.980e-1164.29Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A662BPY8_9BACT1.360e-1061.36Uncharacterized protein n=3 Tax=Bacteroidetes bact... [more]
A0A661YNS5_9BACT1.370e-1061.36Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A2S4ZZD0_9SPHI2.550e-1063.64Uncharacterized protein n=1 Tax=Solitalea longa Ta... [more]
A0A7J5W0W7_9BACT2.550e-1059.52Subtilase family n=1 Tax=Bacteroidetes bacterium T... [more]
A0A524GYJ8_9BACT2.550e-1061.36Peptidase_S8 domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114715contigH-elongata_contig114715:1679..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.983511-CDS-H-elongata_contig114715:1678..18011622929662.983511-CDS-H-elongata_contig114715:1678..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114715 1679..1801 -
1691679110.3809342-CDS-H-elongata_contig114715:1678..18011691679110.3809342-CDS-H-elongata_contig114715:1678..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114715 1679..1801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.0004308-UTR-H-elongata_contig114715:1801..18101622929663.0004308-UTR-H-elongata_contig114715:1801..1810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114715 1802..1810 -
1691679110.3901455-UTR-H-elongata_contig114715:1801..18101691679110.3901455-UTR-H-elongata_contig114715:1801..1810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114715 1802..1810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114715.1170.1prot_H-elongata_contig114715.1170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114715 1679..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114715.1170.1

>prot_H-elongata_contig114715.1170.1 ID=prot_H-elongata_contig114715.1170.1|Name=mRNA_H-elongata_contig114715.1170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MVDDVTYISEPLFRDGTISQAVDTVVGAGSLYFASAGNFRN
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mRNA from alignment at H-elongata_contig114715:1679..1810-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114715.1170.1 ID=mRNA_H-elongata_contig114715.1170.1|Name=mRNA_H-elongata_contig114715.1170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig114715:1679..1810- (Himanthalia elongata Himel1 dioecious)
TGCGACGTCATGGTCGACGACGTCACGTACATCAGCGAACCGTTATTTCG
AGACGGCACAATTTCCCAAGCGGTAGACACGGTAGTTGGTGCCGGAAGTC
TGTACTTCGCCTCCGCGGGAAACTTCCGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig114715:1679..1810-

>mRNA_H-elongata_contig114715.1170.1 ID=mRNA_H-elongata_contig114715.1170.1|Name=mRNA_H-elongata_contig114715.1170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig114715:1679..1810- (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGACGTCACGTACATCAGCGAACCGTTATTTCGAGACGGCAC
AATTTCCCAAGCGGTAGACACGGTAGTTGGTGCCGGAAGTCTGTACTTCG
CCTCCGCGGGAAACTTCCGCAACATGGTCGACGACGTCACGTACATCAGC
GAACCGTTATTTCGAGACGGCACAATTTCCCAAGCGGTAGACACGGTAGT
TGGTGCCGGAAGTCTGTACTTCGCCTCCGCGGGAAACTTCCGCAAC
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