mRNA_H-elongata_contig114711.1169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114711.1169.1
Unique NamemRNA_H-elongata_contig114711.1169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: D7FX43_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX43_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.510e-38
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    4 DERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREIGTE 222
            DERKTRTAYKD MKREAFDLINHIAGNCDLHE VTVRAKE+FAGWRNVKEHVHQK AVICACII AYRE+GTE
Sbjct:  245 DERKTRTAYKDKMKREAFDLINHIAGNCDLHETVTVRAKELFAGWRNVKEHVHQKFAVICACIIAAYREVGTE 317
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: A0A6H5K4A0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.740e-35
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:   40 MKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREIGTE 222
            MKREAFDLINHIAGNCDLHE VTVRAKE+FAGWRNVKEHVHQK AVICACII AYRE+GTE
Sbjct:    1 MKREAFDLINHIAGNCDLHETVTVRAKELFAGWRNVKEHVHQKFAVICACIIAAYREVGTE 61
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: A0A835ZF02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF02_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.990e-28
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    4 DERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREIGTE 222
            D+++TR  YKD MK++AFD+I+H+A NCDLH  VT RAKE+FAGWRNVKEHVH K+AVICACI+ AYR I  +
Sbjct:  153 DDKRTRVGYKDQMKKQAFDVIDHMAANCDLHGTVTERAKELFAGWRNVKEHVHHKNAVICACIVAAYRTIAAD 225
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: A0A7S2CT18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CT18_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.450e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    4 DERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREI 213
            DER+TR  YKDM K++AFD++ H+A +  LH+++  RAKEIFA WRN KEH+ Q    I AC+I A+RE+
Sbjct:  145 DERRTREWYKDMHKKKAFDIMQHVAHSLSLHDMIVERAKEIFAAWRNEKEHLPQFQLSIAACLISAHREL 214
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: A0A7S4A3Y9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3Y9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.920e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 DERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYRE 210
            DERKTRT YKD MK++AFDLI H A N +LH+ V  RA+E+FA +R+ +E V +   V+ AC+I A  E
Sbjct:  183 DERKTRTGYKDQMKKKAFDLIAHAASNLNLHDSVVGRAQELFANYRDEREFVQKFDGVVAACVIQAAEE 251
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BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: A0A7S2WW70_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW70_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.190e-14
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    4 DERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREI 213
            D+RKTR  YKD  KR+AF  + H+A N DLH+ V  RA+++F  +R+ +EHVH    VI AC+I A+RE+
Sbjct:  290 DQRKTREWYKDNHKRKAFQEMEHVASNLDLHQQVKTRAEDLFVYFRDEREHVHHYKLVIAACLIQAHREL 359
[Close]
BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Match: M4C3D1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3D1_HYAAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.520e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   40 MKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVKEHVHQKHAVICACIIGAYREIGTE 222
            MK++A  LI+H   N DLHE+V+ RAK++FA +R+V+EHVHQ  A++  C+I AY E   E
Sbjct:   54 MKQKACRLIDHTMSNLDLHEIVSSRAKKMFAEFRDVREHVHQFDAMVAGCVIAAYMETSKE 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114711.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FX43_ECTSI1.510e-3891.78C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K4A0_9PHAE3.740e-3591.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZF02_9STRA4.990e-2867.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CT18_9STRA1.450e-1754.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4A3Y9_9STRA4.920e-1553.62Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2WW70_9STRA4.190e-1450.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4C3D1_HYAAE1.520e-1250.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114711contigH-elongata_contig114711:1265..1948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7FX43
EggNOG OGs29I43@1,2RRAZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.9170744-CDS-H-elongata_contig114711:1264..13371622929662.9170744-CDS-H-elongata_contig114711:1264..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114711 1265..1337 -
1691679110.3474972-CDS-H-elongata_contig114711:1264..13371691679110.3474972-CDS-H-elongata_contig114711:1264..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114711 1265..1337 -
1622929662.9311624-CDS-H-elongata_contig114711:1799..19481622929662.9311624-CDS-H-elongata_contig114711:1799..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114711 1800..1948 -
1691679110.3659368-CDS-H-elongata_contig114711:1799..19481691679110.3659368-CDS-H-elongata_contig114711:1799..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114711 1800..1948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114711.1169.1prot_H-elongata_contig114711.1169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114711 1265..1948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114711.1169.1

>prot_H-elongata_contig114711.1169.1 ID=prot_H-elongata_contig114711.1169.1|Name=mRNA_H-elongata_contig114711.1169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
QDERKTRTAYKDMMKREAFDLINHIAGNCDLHEVVTVRAKEIFAGWRNVK
EHVHQKHAVICACIIGAYREIGTE
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mRNA from alignment at H-elongata_contig114711:1265..1948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114711.1169.1 ID=mRNA_H-elongata_contig114711.1169.1|Name=mRNA_H-elongata_contig114711.1169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at H-elongata_contig114711:1265..1948- (Himanthalia elongata Himel1 dioecious)
CAGGACGAGCGAAAGACGCGCACCGCGTACAAAGACATGATGAAACGGGA
AGCATTTGATCTCATAAATCATATCGCGGGAAACTGCGACCTCCACGAGG
TGGTTACCGTAAGAGCCAAGGAGATCTTCGCAGGGTGGCGAAATGTCAAG
TGAGTGAAGCGAGAGCTGCCATCAACGCATGAGAGGCGGTGGGGGGGGTA
TATGCAAACTTATAGAGACACAGAAGAGTTATGTGTTCATGAATGCAATT
GTGTGTGGGATGTGAGACGCAAATATTCCAGCTTGCGTGGCTGGGGCAAT
AAAGCTTTATGGGGTGTGAGACGAAGGTGGCGCCTATCGAAACACGAGAA
GAATTGTCTGCGAACCATAAAGAAAAAAAACGTCCTGGGAGGCGTTTTCC
ATTTTATGTGCCTAGACGCTAACTCGCGCGCACGCTGAGGGAAGACGACT
GATGTCTAGCGTTGCTGCGTTGTATTCTTGACAAATAATCAAGAAATCTT
ATTCGTTTTGTGCATGTCTTCTTCCACACCCCCCTCAACCCTCTTCGATG
CTGTGCGGTGCTGTGTGGTGCGTCTGCTTCTCCCCCTCCGCCAACGCTTT
TTAAAAAATAGAGAGCACGTGCACCAGAAGCATGCCGTGATCTGTGCGTG
CATCATCGGCGCCTATCGGGAGATCGGTACGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig114711:1265..1948-

>mRNA_H-elongata_contig114711.1169.1 ID=mRNA_H-elongata_contig114711.1169.1|Name=mRNA_H-elongata_contig114711.1169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig114711:1265..1948- (Himanthalia elongata Himel1 dioecious)
CAGGACGAGCGAAAGACGCGCACCGCGTACAAAGACATGATGAAACGGGA
AGCATTTGATCTCATAAATCATATCGCGGGAAACTGCGACCTCCACGAGG
TGGTTACCGTAAGAGCCAAGGAGATCTTCGCAGGGTGGCGAAATGTCAAC
AGGACGAGCGAAAGACGCGCACCGCGTACAAAGACATGATGAAACGGGAA
GCATTTGATCTCATAAATCATATCGCGGGAAACTGCGACCTCCACGAGGT
GGTTACCGTAAGAGCCAAGGAGATCTTCGCAGGGTGGCGAAATGTCAAAG
AGCACGTGCACCAGAAGCATGCCGTGATCTGTGCGTGCATCATCGGCGCC
TATCGGGAGATCGGTACGGAGAGAGCACGTGCACCAGAAGCATGCCGTGA
TCTGTGCGTGCATCATCGGCGCCTATCGGGAGATCGGTACGGAG
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