mRNA_H-elongata_contig114700.1168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114700.1168.1
Unique NamemRNA_H-elongata_contig114700.1168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.540e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct:  225 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 260
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BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1341 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1376
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BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1321 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1356
[Close]
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1290 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1325
[Close]
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.340e-12
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQLLCLARAVLQR+QILVMDEATANIDQHTDSLIQ
Sbjct: 1240 QRQLLCLARAVLQRTQILVMDEATANIDQHTDSLIQ 1275
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BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: N6UP16_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UP16_DENPD)

HSP 1 Score: 59.3 bits (142), Expect = 6.390e-10
Identity = 27/36 (75.00%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQL+CLARA+++ ++IL+MDEATAN+DQHTDSLIQ
Sbjct:   34 QRQLICLARAIVRNNKILIMDEATANVDQHTDSLIQ 69
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BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: N6UIT0_DENPD (ABC transporter domain-containing protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UIT0_DENPD)

HSP 1 Score: 59.3 bits (142), Expect = 1.030e-9
Identity = 27/36 (75.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            Q+QL+CLARA++++++ILVMDEATAN+DQHTDSLIQ
Sbjct:   64 QKQLICLARAIVRKNKILVMDEATANVDQHTDSLIQ 99
[Close]
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: N6TSN4_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TSN4_DENPD)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-9
Identity = 27/36 (75.00%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQL+CLARA+++ ++IL+MDEATAN+DQHTDSLIQ
Sbjct:   74 QRQLICLARAIVRNNKILIMDEATANVDQHTDSLIQ 109
[Close]
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: A0A6J2Y2S6_SITOR (multidrug resistance-associated protein 4-like isoform X1 n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2Y2S6_SITOR)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-9
Identity = 28/36 (77.78%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQL+CLARA+++ ++ILVMDEATAN+DQHTDSLIQ
Sbjct: 1233 QRQLICLARAIVRNNKILVMDEATANVDQHTDSLIQ 1268
[Close]
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Match: N6ULW0_DENPD (Uncharacterized protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6ULW0_DENPD)

HSP 1 Score: 59.7 bits (143), Expect = 2.260e-9
Identity = 28/36 (77.78%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 108
            QRQL+CLARA+++ ++ILVMDEATAN+DQHTDSLIQ
Sbjct:  547 QRQLICLARAIVRNNKILVMDEATANVDQHTDSLIQ 582
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114700.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW5_ECTSI1.540e-12100.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JDN6_9PHAE1.700e-12100.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW4_ECTSI1.700e-12100.00Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI1.700e-12100.00Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE4.340e-1297.22ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
N6UP16_DENPD6.390e-1075.00ABC transporter domain-containing protein (Fragmen... [more]
N6UIT0_DENPD1.030e-975.00ABC transporter domain-containing protein (Fragmen... [more]
N6TSN4_DENPD1.190e-975.00ABC transporter domain-containing protein (Fragmen... [more]
A0A6J2Y2S6_SITOR2.250e-977.78multidrug resistance-associated protein 4-like iso... [more]
N6ULW0_DENPD2.260e-977.78Uncharacterized protein (Fragment) n=1 Tax=Dendroc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114700contigH-elongata_contig114700:1..111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog2880.D8LSW3
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.8752606-CDS-H-elongata_contig114700:0..1111622929662.8752606-CDS-H-elongata_contig114700:0..111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114700 1..111 +
1691679110.332097-CDS-H-elongata_contig114700:0..1111691679110.332097-CDS-H-elongata_contig114700:0..111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114700 1..111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114700.1168.1prot_H-elongata_contig114700.1168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114700 1..111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114700.1168.1

>prot_H-elongata_contig114700.1168.1 ID=prot_H-elongata_contig114700.1168.1|Name=mRNA_H-elongata_contig114700.1168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
QRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQV
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mRNA from alignment at H-elongata_contig114700:1..111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114700.1168.1 ID=mRNA_H-elongata_contig114700.1168.1|Name=mRNA_H-elongata_contig114700.1168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig114700:1..111+ (Himanthalia elongata Himel1 dioecious)
CAACGGCAACTACTTTGCCTCGCCAGAGCCGTCTTGCAAAGGTCGCAGAT
CCTTGTCATGGACGAGGCTACGGCCAACATCGACCAACACACCGATTCCC
TTATACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig114700:1..111+

>mRNA_H-elongata_contig114700.1168.1 ID=mRNA_H-elongata_contig114700.1168.1|Name=mRNA_H-elongata_contig114700.1168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig114700:1..111+ (Himanthalia elongata Himel1 dioecious)
CAACGGCAACTACTTTGCCTCGCCAGAGCCGTCTTGCAAAGGTCGCAGAT
CCTTGTCATGGACGAGGCTACGGCCAACATCGACCAACACACCGATTCCC
TTATACAGGTGCAACGGCAACTACTTTGCCTCGCCAGAGCCGTCTTGCAA
AGGTCGCAGATCCTTGTCATGGACGAGGCTACGGCCAACATCGACCAACA
CACCGATTCCCTTATACAGGTG
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